Array 1 1118898-1116498 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035926.1 Aliarcobacter thereius LMG 24486 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================= ================== 1118897 37 100.0 40 ..................................... TTTAAATAAACAGATTTTAACATTAACAGGGATATAGGAA 1118820 37 100.0 37 ..................................... ATCTATGCTATTATAACTAGCAAAGTTGCTTCTATCA 1118746 37 100.0 39 ..................................... AATATTCTGTTCCCAAAAAAGCCCCAACTATTACAGGTA 1118670 37 100.0 41 ..................................... GTTGGATTTTATTTAAAATATTAGGGTTGCACAAAGTACAA 1118592 37 100.0 103 ..................................... TTGAATCTTCATGATTCAACTCTTTGAGTTTAATGCCTGGCACTAAAATCACCCACTTTCATTAAGACTTGAATCTTCATGATTCAACTCTTTGAGACATAGG 1118452 37 100.0 36 ..................................... CTACATATAGGCTAAAAAACTTTTCGTTTGTATGTC 1118379 37 100.0 38 ..................................... TTTTTCCATGAATAAAATGGAAAACCATAACTGCTTTC 1118304 37 100.0 33 ..................................... TCTCTTTTTAGAGACCCTAAATTTTCTAAACCA 1118234 37 100.0 39 ..................................... TTTGAACACAGCCTGCAAACCGTTTGCTAGGTTTGCTCC 1118158 37 100.0 36 ..................................... AAAAGGAACAACCACAGAACAGTGGTTTCCTTTTAA 1118085 37 100.0 36 ..................................... ATGTCCCTTCGCTCTCAGGAGCTAATTTCCAATCAA 1118012 37 100.0 41 ..................................... ATTTCCCTCCACAATCTCAGAAGATATAGGGAAGCCAGAAA 1117934 37 100.0 36 ..................................... ACATCTGTTCCATAAAAGAAGTTTGCTTCTTTTACG 1117861 37 100.0 34 ..................................... AAGATATAAATCCTCTTTTATTTCTTTTAGTTCT 1117790 37 100.0 35 ..................................... TTCATCCAGCAGTTTTAAAAGAAGATATAAATCTT 1117718 37 100.0 34 ..................................... AAGAGAATAAATCCTCATCTTTAACACTTTTTGA 1117647 37 100.0 35 ..................................... AACTATGAAAAAGATAATGCGTAAGCTATTTGCTT 1117575 37 100.0 33 ..................................... TACTTTTATAGAATTTATCCTATGTTTTTGTGG 1117505 37 100.0 35 ..................................... GAAGAATCCTTTTTGATATGCAAGTTGTTGCATAC 1117433 37 100.0 39 ..................................... TTTGTATCAGGGGCAATGCAATCTGTTCTTCCCAATTCT 1117357 37 100.0 35 ..................................... ATGCTTAAATTAATTTTAGCTATTTGCTCTAATAC 1117285 37 100.0 38 ..................................... GTTCTGAACTTTGCCTCAAAAGTTTTTCTATCAAACTT 1117210 37 100.0 40 ..................................... TTTGCTCGTAAGCATCCTCGTTAATTATATTTGAGAAAAA 1117133 37 100.0 37 ..................................... TCAAATTTTTCTTCAAGCCTTATTGTCTCTTCTCTAG 1117059 37 100.0 43 ..................................... AATGTATCAAAAAAATTTTTTGATGTCGAAGATGCGTTAATAA 1116979 37 100.0 39 ..................................... TTCGTAGATTTCTACGACATACTGAGTATCATTTAGAAG 1116903 37 100.0 37 ..................................... GATAATAACCAAATTATATCTAACATTTCACAAACTG 1116829 37 100.0 39 ..................................... TTTAACTTTGGCTTGAAGCCAAATATCTCTTCCAACCAC 1116753 37 100.0 36 ..................................... TTGAAGCCAAATGTCGTTACCAACTATCATAAAGTT 1116680 37 100.0 36 ..................................... CATCCTCGTTGTTAGCATATGAGCCAAAGTTTATAT 1116607 37 100.0 36 ..................................... CTATTTCAAAAAGCTTATTATAGATTGTGTCTATAA 1116534 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================================================================================= ================== 32 37 100.0 39 ATTCAATAACAATGACCCGATTTAAGGGGATTAAGAC # Left flank : TTTACGACTATATCATCTTTGTGAGAGTTGTATTCCAAAATCTTTTGAGCTTTGTAATAGGGAGGAAATTTTTGAAAAAAAAGAGTATTTTATATAAAAAATAGTTTGCGAACTTTTTTTGACTGATTTAAGGGCTTTTAAGCTAAACTTCAAGATAAAAAGTTCGCAAACCTATGTTTTATAAAAGTTAATATATAGGTTTGCGAGCTTTTAGTTTTGTTTAAGATTTAAAATGCCATTTTATGGTACTTCTGAAACTTAAATAAAGCTAAAAAATAGAAAATCTCTATTTTTGAGTTTTTTATCTTTTGGTTTGCGAACTTTTTTTATAAGAAAAAGTCCATAAAATCGAGTTTTTTAACAATTTATTGTCAAAACACTAGAGTTGCTTTTTTAAAAATGGTATATATTTGCGAACTTTTTTGATACATTATGAGTATATAGTAATTTTAAGTAAAGATTAAATACTATTTTAGCTGTGAAAAATGGATTTAATGGCT # Right flank : GCTTTTCGCGAAATAATCTGCAACCTTTAAGACTATTCAATAACAATGACCCGATTATTTTTGCCTTTGGCAAATTCAGTCATCACTAAAAATTACGAAAAGCTAAAGCTTATTCTATTTTTAGGACTCAGAAGAGGGGATTTATAGAAATGGAATTTTTATCAATACTTGCTTTGCAATATTTCCTTCTAAGCTATTCTATCAATAAAGCAGGTGGTGAAATTAAAATAAAGATTTGACTAAAGTCTAATTTCGAAACTAAGAATTAATTTTTTTCTTGAGGTAAAATTATATAAAATAAATTTAACGACAGTTTCTGTCAAAAAGATATATTAGAATTCTTCCAAATTAAAAGGGAGAAAAAATGAAAAAATCAATTATCTTATCACTCGTTTTAATAGGAAGTTCAAATCTATTATTTGCAAGTAATAAAGTATATAGTACTAATTTAGAGTATCACTATAATTATGGTAATAAAAAATGTTTAAAAACAGATTTCT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAATAACAATGACCCGATTTAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 1149659-1147779 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035926.1 Aliarcobacter thereius LMG 24486 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1149658 36 100.0 30 .................................... TCTGTTCAAGATGCACTAAGATTAAAGAGT 1149592 36 100.0 30 .................................... ACTTTTGGTTTTATAATGCTTTTCACCTTT 1149526 36 100.0 30 .................................... TAGATGATGTGCGACAAGGTCAAGAGCTTA 1149460 36 100.0 30 .................................... ATGAAGATGATGGAACAGAAAAAGAATACG 1149394 36 100.0 30 .................................... ATACCTAGTTTATAACCCACCTAGAGACCA 1149328 36 100.0 30 .................................... ATTATATAATTCAACTCCAATTCCCCATCT 1149262 36 100.0 30 .................................... AGAGTTTTTAGAATTAGTTAGTACAGAAGA 1149196 36 100.0 30 .................................... ATGACTCATATATCCATTTTTTACAAAACT 1149130 36 100.0 30 .................................... AGAGCCTGTTCATAGTGGAGCAGATATTAA 1149064 36 100.0 30 .................................... CATTGTCGAGAGGGGAACAACCCAGACTAA 1148998 36 100.0 29 .................................... TTGGTTAAAAAAGGAATATTAGTAACTGT 1148933 36 100.0 30 .................................... CAGGAGCAGTTGAAATAATTACTTCAAGAA 1148867 36 100.0 29 .................................... TTGTTTATTTGTGAATTTCACGGCTAATT 1148802 36 100.0 29 .................................... TTACTATATAGGCGAACCAATAAGACCGA 1148737 36 100.0 30 .................................... TAGATGGAGAAATTATAAATCTTGAAAAAT 1148671 36 100.0 29 .................................... TCATAGTTATATTGGAAACCCGACTCGCT 1148606 36 100.0 30 .................................... ATAGACAATATCATCTTCGTACCTTGGATT 1148540 36 100.0 30 .................................... ATTATAAAATTGAAGATGTAGAGCAAATAA 1148474 36 100.0 30 .................................... AGAAACTAATCCTGAAAAATCAATCCATTT 1148408 36 100.0 30 .................................... CTGTTTGTAGTTCTATTGTATCATCAATCT 1148342 36 100.0 30 .................................... AGAGTTTTATCTTGATAATTCACTTATAGT 1148276 36 100.0 30 .................................... TGGTTGCCATCTAACTATGGATATGCTGAA 1148210 36 100.0 30 .................................... TTTATTCTTTAGCTCATATATTTCAAGTCA 1148144 36 100.0 30 .................................... GTACGAGTGCAGTTATAACAGCTTATATAC 1148078 36 100.0 30 .................................... ACTAAATGCAATGTATACAAGTGTAAAAAT 1148012 36 100.0 30 .................................... TAGGATATGAGTCAAATACTAGAATTATCA 1147946 36 100.0 29 .................................... GCTTCAATTTATTCAAATATTAAAAATTT 1147881 36 100.0 30 .................................... TAAGATGGATAAATTAACGGCAAAATCAAT 1147815 36 94.4 0 ...............................G...G | T [1147782] ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.8 30 ATTATATCAAATGGGGATTTGAGAGTAGATTAAAAC # Left flank : TCAACGAGTTCAAATATCATATTGCATGAAACAAATAGTTGCAAACTATCAAAGTATATGTTTGGGTAAAGTTGAAGATTTAAAGCTTTTTAGATTATGAAAAAGCAAAAAAAAGAAGAGATAAGTAGGTATAGAAAAATGGTACTCTTTGCAATGTTTGATATGCCAACAGATACAAAAGGTGATATTAAAAAATATACAAAATTTAGAAAAAAACTTCTAGAGATGGGGTTTATAATGTTTCAATTCTCTATTTATGTGAGATTTTGTAACAGTTTAGAAACAGCACAAAAATATGAGAGAAAAATCAAAGAAATTGCACCAACAAAAGGTTCAATAAGAGTATTAAAAGTAACAGAAGCACAATATAAAAATATGATTATTATAGAAAATTATCGCAAAAAACCTGAAAAAAAAGTAGAAAAACAGACTCAAACAGTGCTTATTTTTTAGTGTAAAAACTTTATAAAACCCTGTATTACAGGGTTTTTGCCTACTCT # Right flank : AAGCTTTAGTTTCCTAAAGCCTCTTTAATAGCAAAAATTTCATTCATTGTTTTATAAAGTTGATCAATATGAAGCATATTTGGACCATCACTTTTTGCAACTTTTGGGTCAATATGCGTTTCAAAGAAAAATCCATCAACTCCAACACTAGCAGCCGCTCTTGCCATATATGGTACAAAAGAGCTATTTCCCCCAGTTGTTCCACCAGTGCTTGGAATTTGAACACTATGTGTTGCATCAAAAATCACAGGAGCATATTGTTTAAGAAGTAGTAAGTTTCTCATATCTACAACCAAAGCACCATATCCAAAAGTATTTCCTCTTTCACAAAGCCAAACACCAGCTTCTTTACTGCTTTCATAACTTACTTCATTTACTCCTCTTGTGTTTAATACTTTTTCAACAGGATGTTTCATAGCATCAGCTGCTAAAAATTGACCTTTTTTTATATTTATTTTTGCAGGAGTTTTAGCAGCAGCTACAAGTAAATCGGTTTGTCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATATCAAATGGGGATTTGAGAGTAGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //