Array 1 63589-63737 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWRP01000034.1 Pluralibacter gergoviae strain AK5227 NODE_34_length_63758_cov_42.6863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63589 28 100.0 33 ............................ CCAGTGGTCGCCGCACGTTTTCAACACCATGGC 63650 28 100.0 32 ............................ TTCCGCGCGGCGTGCTATGGAGGAGAGATATA 63710 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGAAGCGCGCGACTGGCTGGCGGAGAAGGGCTACGACCGTGCGATGGGCGCCCGTCCGATGGCCCGCGTTATTCAGGACAACCTGAAGAAGCCGCTGGCCAACGAGCTGCTGTTTGGCAAGCTGGTGGACGGCGGCCAGGTGACGGTCGATCTCGATGCCAGCAGCAATACGCTGACCTACGACTTCCAGGCGGCGCAAAAGCGCAAGGCGGAAGCGGCGCACTGAGTGGCGGAAGCGTGACGACAAACCGGGCGAAAGCCCGGTTTTTTTATGTCTGTGGCCCGGTCCGGCCCGGCGGTGAAAACGAATATAAAGTCGGTATGCCGTTATCTGGTTTTATGAGCGACTGGGCTGCCTGCTTTTGCCGACCCTTTTTTTATGCGGGTTGGTAACATATTGATTTTCAATATGCATTTCAGGTGGTAATAAAAAAGGGTCTGCGCCACCAGAATCTGTTTTTTCTGTTTTATAACAGTGTGATAGAGTATTCGATGGTTA # Right flank : ATGTAAAATTCCTTGTAGCGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 105-495 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWRP01000070.1 Pluralibacter gergoviae strain AK5227 NODE_70_length_15693_cov_41.9615, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 105 28 100.0 33 ............................ TTTGGAGTCACCATGCTGACGATGATTTATAAG 166 28 100.0 32 ............................ CTTTCTTAACTTCCGAATGATCGGCGAGCGAC 226 28 100.0 32 ............................ GTCAGGAAGAATCCAGCAAAAAAGCCGAGCTG 286 28 100.0 32 ............................ TGAGTCAGTCCAGATACGAAACCCCCGACTTT 346 28 96.4 32 ..................T......... AAGCTGACGAATCCGGCGCATCGCTGCGCGCT 406 28 96.4 33 .................A.......... TCATCAACGCCGTAGTACGCCATGAGTTTGCGC 467 28 89.3 0 .......................CTC.. | A [488] ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCAGCCCTTCACTTCCCCTGTATTGGCTGGTGAAGTCCTCCGCCCTTCCTCGCAGTTAGGGCAAGTGTCGGATCGATCGTCGTACGTTACCAGAACGACTTGAAG # Right flank : ACATAACCCATTGACCACGTTCCTTAATGAGTGCTACCACTAGACCAAATTCGGGAAGCATTACATCACGCCGCGAGGGAATCATGCAGATCCTGCCATCAGATTTAAAAACCATCCTCCACTCCAAACGCGCCAATATCTACTATCTCGAAAAATGCCGCGTGCAGGTCAACGGCGGGCGGGTGGAGTATGTTACCAGCGAAGGCAGCGAGTCCTGCTACTGGAATATCCCTATCGCCAATACCACGGCGGTTATGCTTGGCATGGGCACCTCGGTGACGCAGGCGGCGATGCGCGAGTTTGCCCGGGCCGGGGTAATGGTCGGTTTTTGCGGCACGGACGGTACGCCGCTGTATGCGGCCAACGAAATGGATATAGATATCTCATGGCTTTGTCCGCAGAGCGAGTACCGGCCGACAGAGTATCTGCAGCAGTGGGTCTCTTTCTGGTTTGATGAAGAGAAGCGGCTGCAGGCGGCAAAGCGATTTCAGCAGGTCAGA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9703-10031 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWRP01000070.1 Pluralibacter gergoviae strain AK5227 NODE_70_length_15693_cov_41.9615, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9703 28 100.0 32 ............................ ATTGATGGCAACATGGGTCATCTGCTCGATGC 9763 28 100.0 32 ............................ GTACGAAAACACACTCATTGAGTGTATAGTAA 9823 28 100.0 33 ............................ TACGAAAATACGATCAGGTCGCATACGCAGGAT 9884 28 100.0 32 ............................ ATCAGTATCGGCAATGTATATCCCGCCATCCC 9944 28 100.0 32 ............................ GTAGTCATCGTCAGATGGCATACGAAAGTAGG 10004 28 82.1 0 .....................CCCA..C | ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGCGCGGAGATCGCCGCCGTACCTGCGGGCGCCCGGTGGCGTACCGTCAGCCGCGCGCAGGTGAAAAGCAGTCCGCAGCGCCTGATGCGCCGCTCGGTGCGCAAGGGCTGGATTTCGCAGGCGGAGGCCGATCGGCGGCAGGCAGTTACGCCGGCCCGAACGCTGAATCTCCCTTATCTGAATCTGAAAAGTCTCTCCAGCCAGCAGCACTTTCGCCTGTTTATCGCCCACGGCGAGCTGCGCCCGACACCCACGGCAGGAGCGTTTAGCAGCTACGGGCTAAGCGCAACGGCCACCGTTCCCTGGTTTTGACCTTACGGACCGCGGTTTTCGCCGCGGCCTTTTCTTTATTACGTTGCGGTTATGAAAACCCTTTTTTTGAGCAATGATCTAACGTATTGATTTTATTTAACTGAAAACGTGAGGTAAAAAAGAGGGTAAAACATGGTTTTTGGGCGTTAATGGTTTTGTAACAGTGGTATAGAGCAGTTTTACTCTT # Right flank : CTCCGGACATAAAAAAGCCGGGAATAAACCCGGCTTAACTTTTCGACTACCCCACGGGCATCAAATCAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATATAGTTTTTACGCATTTTACCGGAGATATGCGCGGTAACTACGTGACCGTTTTCCAGCTCTACGCGGAACATCGTGTTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCGGGGGTATCACTACCATAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGATTTACCGGTCATCTTTCCGCATACGCGGCGACCGAAATCTTGAGATCGTTTTTGCGCATTGCCCGAACGTCGCACAGATACCGTGTGACGAGCGCAAACCAAAGGGGAGATTCCTGAAACGTCGGCAGGGCAACAGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //