Array 1 464-2149 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYTL01000021.1 Streptococcus agalactiae strain CH8-24 Contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 464 36 100.0 30 .................................... TTGGAAAGATGGCAGAGGGGTTAACGCAGC 530 36 100.0 30 .................................... GTAACCCGTCTTTTCCATCAGTCCCATCTT 596 36 100.0 30 .................................... TTGGAAAAAACACGAAAGTGATATTACTTT 662 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 728 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 794 36 100.0 30 .................................... TATTTTCTGATGATACACTTGCTCCATTTT 860 36 100.0 30 .................................... CCAGTTTAGAAACAGAACAAAACTAACGAA 926 36 100.0 30 .................................... AGACAAAGAAGATGGCAAGTCTATCAACAA 992 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 1058 36 100.0 30 .................................... ATGTTGTAGAATCATATCGACCATATAACC 1124 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 1190 36 100.0 30 .................................... AAATTGCTCTATCAGTCAATAAAGCAAGAT 1256 36 100.0 30 .................................... TCATATTGAGTGGTTGTTTAATTAAATTGA 1322 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 1388 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 1454 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 1520 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 1586 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 1652 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 1718 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 1784 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 1850 36 100.0 30 .................................... ATAATATATTATATAATAAATATAGAAATA 1916 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 1982 36 100.0 30 .................................... TCAGCGAGATGCTCTAAGTAAGCATGTTGA 2048 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 2114 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GGCAGATAGAGAGTATGCACTGGTTATTGGACGTTGTTTATCATGAAGATCATCATCAGACATTGGATAAAAGAGCCGCATTTAACCTAAATCTTATCCGAAAAATGTGCTTATATTTTCTCAAAGTGATGGTATTTCCTAAAAAAGACCTCAGTTATCGTCGCAAACAACGGTATATTTCTGTCCATTTGGAAGATTATTTAGTCCAATTATTTGGAGAAAGAGGCTAAGCAGATCATTGATTTAAAAAGGAATCTTTTCAAAATTGATGTCCGGGCACAAAAGGATGAAGAGAAAGTTTTCATGCGTACGGCGTGATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //