Array 1 2525463-2524407 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP008961.1 Mycobacterium tuberculosis strain 0B259XDR chromosome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                                  	Insertion/Deletion
==========	======	======	======	=============================	=================================================	==================
   2525462	    29	 100.0	    43	.............................	GCGAGGAACCGTCCCACCTGGGCCTGCCCCCAGCGGGTCGTCA      	
   2525390	    29	 100.0	    43	.............................	GCGAGGAACCGTCCCACCTGGGCCTGCCCCCAGCGGGTCGTCA      	
   2525318	    29	  96.6	    44	............................T	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTCA     	
   2525245	    29	 100.0	    45	.............................	ACGGAAACGCAGCACCAGCCTGACAATCTTATTCTCGCNTCGTCA    	
   2525171	    29	 100.0	    44	.............................	ATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAGGTCGTCA     	
   2525098	    29	 100.0	    42	.............................	CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTAGTCGTCA       	
   2525027	    29	 100.0	    39	.............................	CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCG          	
   2524959	    29	 100.0	    49	.............................	TAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCNNNNNNNNNNCA	
   2524881	    29	 100.0	    47	.............................	CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTAGTCGTCAGATCA  	
   2524805	    29	 100.0	    43	.............................	CCTCATGGTGGGACATGGACGAGCGCGACTATCGGGGTCGTCG      	
   2524733	    29	 100.0	    44	.............................	TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCAGTCGTCA     	
   2524660	    29	 100.0	    47	.............................	GCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCATGTCCTCA  	
   2524584	    29	 100.0	    47	.............................	ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCAGTCGTCA  	
   2524508	    29	  96.6	    44	...........A.................	TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGAGTCGTC     	
   2524435	    29	 100.0	     0	.............................	|                                                	
==========	======	======	======	=============================	=================================================	==================
        15	    29	  99.5	    44	GACCCAAAACCCCGAGAGGGGACGGAAAC	                                                 	       

# Left flank :   ACCATCGGGGCCCTCGCGGTGGCCCTGATGATCGGCGATGAACCGGGTAATTAGCGTGCTGGCCGGTCGAGCTCGGCCGCGAAGAAAGCCGACGCGGTCTTTAAAATCGCGTTCGCCCTTCGCAATTCGGCTTTGTCCCGCCGCAAGCGCTTCAGCTCAGCGGATTCTTCGGTCGTGGTCCCGGGCCGTGCGCCGGCATCGACCTGCGCCTGGCGCACCCACTTACGCACCGTCTCCGCGCAGCCAACACCAAGTAGACGGGCGACCTCACTGATCGCTGCCCACTCCGAATCGTGCTGACCGCGGATCTCTGCGACCATCCGCACCGCCCGCTCACGCAGCTCCGGCGGGTACCTCCTCGATGAACCACCTGACATGACCCCATCCTTTCCAAGAACTGGAGTCTCCGGACATGCCGGGGCGGTTCAGCGGTTCAGAGAGGGGACGGAAACCTGCATCCGGAAAGTCCGTACGCTCGAAACGCTTCCAACGTGTCGTCA
# Right flank :  TACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGAG

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.00, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GACCCAAAACCCCGAGAGGGGACGGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [0,11] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-6.40,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [1-1] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.74   Confidence: HIGH] 

# Array family : NA
//