Array 1 1205496-1204490 **** Predicted by CRISPRDetect 2.4 *** >NC_014106.1 Lactobacillus crispatus ST1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1205495 29 96.6 32 ............................C TAGAATCATCTCGTAAATTAGGAGGTGATTCT 1205434 29 100.0 32 ............................. GAATTTTGAGAAAGAAGGCATTAATATGATTG 1205373 29 96.6 32 ............................C GATTTGTTAGCCTTAGTAAAGTAGCATAGGTG 1205312 29 96.6 32 ............................C TATTTTTAGCAAAACCACGGGTCTGTTTGCCA 1205251 29 96.6 32 ............................C AACGTTCTGTGCATCTAAACCATTGATTAACT 1205190 29 100.0 32 ............................. CCTTTTCAATATGCTTCTAACCAGTTCCTTGT 1205129 29 100.0 32 ............................. GTCATGTTGACATAATGAAAGCCGCTCACAGT 1205068 29 100.0 32 ............................. ACTGTTTGCTACTGCATTAATTGCATCATCAT 1205007 29 100.0 32 ............................. TTATCAGATGATCTGAAAGACGGAAAATTACA 1204946 29 100.0 32 ............................. CAATTAATCTGATAATTCCGTCATGTGACTCC 1204885 29 100.0 32 ............................. AAAGCATTAATCTTTTCCTTCCTGAATTAATA 1204824 29 100.0 32 ............................. TAAGCCTCTGATCTATACGCCAAAACGCAAGA 1204763 29 100.0 32 ............................. ATGCAGGACTATCACCTACAACCACAATCAAC 1204702 29 96.6 32 ............................C AAAAGCCTGAATTTTATCTAATTTTTGGGCAA 1204641 29 100.0 32 ............................. CATCAAAATCCTAACGTTGTGCGGCAATGACT 1204580 29 96.6 32 ............................A GTAACTGAAGGCTCTTCCTTGGCCTTAGGTTG 1204519 29 89.7 0 .........................AA.A | C [1204494] ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.2 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGAATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTCTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGGATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : GCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATTAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAAGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTGAAAAAAATAGATAGTGGCGTTGATGCAGAAATGATT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1227731-1226785 **** Predicted by CRISPRDetect 2.4 *** >NC_014106.1 Lactobacillus crispatus ST1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1227730 29 100.0 32 ............................. GTGCCAGTTTCATCACTGCCCCAATCATCATT 1227669 29 100.0 32 ............................. GATGAGGACAATCAAGTTTTGACGCAAAGAAA 1227608 29 100.0 32 ............................. ATCACAAATTTGCAACCATTCATACTGACCTG 1227547 29 100.0 32 ............................. TACCGTTCATCGGTCTTGATGTACCTTGTGCT 1227486 29 100.0 32 ............................. GCTCTTTGGGCATATCCTACTGAAGTGCCTTT 1227425 29 100.0 32 ............................. ATGTTTGGGGTGCTGCTGGTCCAACAACATTT 1227364 29 100.0 32 ............................. ACCGTACGCCTTGGCTTTTGCGACAGCATTCT 1227303 29 96.6 32 ............................C AATGCTCAAACGTTAAATTTGGTTGATAAAGA 1227242 29 96.6 32 ............................C ATGGACAGTGCTCTCGTTGGGGCAGTTGCTAC 1227181 29 100.0 33 ............................. GTTGATTATCAGTCAAACGATCGATTGGAGCAT 1227119 29 100.0 32 ............................. GAATTCAACGCATTAGGTGGGACAACGGGTTC 1227058 29 100.0 32 ............................. TAAACTCATTTATTTTAATGTTGATGACAAAA 1226997 29 100.0 32 ............................. TCTAAAGAATTGGCCTTGACTGCAGTTAATCC 1226936 29 100.0 32 ............................. TAAGTGCGTAGAAGATAACAGCGTACGAGGAT 1226875 29 100.0 32 ............................. TTGGTGCAGTGAATGAGAAATATGGGAATGCT 1226814 29 82.8 0 ...........AC....T......T.A.. | A [1226793] ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.5 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGATTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAATTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1230912-1230459 **** Predicted by CRISPRDetect 2.4 *** >NC_014106.1 Lactobacillus crispatus ST1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1230911 28 100.0 32 ............................ CGACCTCAAAAAGCAAATTGGGGGGGTAACTA 1230851 28 100.0 33 ............................ CCACTTGCTCCACCATTAGGATTAATCGCTGCT 1230790 28 100.0 33 ............................ TGGTACTGTCAATTTGCGGCGTAACAGCAAATC 1230729 28 100.0 33 ............................ TCCACGACCTGCAGGCGGTGGGCAAGATTATGA 1230668 28 100.0 33 ............................ TTAAAATAATTAAAGAGGGAACTCCAAATATCG 1230607 28 100.0 33 ............................ TGACAGCTCTGCTGTAGTGATCGAATCAGACAA 1230546 28 89.3 32 ...........ACA.............. TCCGACGGGGTACCCCGCGGCTGTCCATCATC 1230486 28 71.4 0 ...........ACA........CT.AAT | ========== ====== ====== ====== ============================ ================================= ================== 8 28 95.1 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : GTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCATCCACAGCATATTATTGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTAGT # Right flank : AGCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATAATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAAAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //