Array 1 715203-712769 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083376.1 Pseudoxanthomonas sp. X-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 715202 32 100.0 34 ................................ TGCGCGAGCCTGGCGGACGTGTTCGACAACGAGG 715136 32 100.0 34 ................................ GTCTACGCCTACGCGGTGACCCACCACCAAGACC 715070 32 96.9 34 .....................C.......... GCTCGCGGCGTGCTGCGCAATGAGGTCGAGCGTC 715004 32 100.0 35 ................................ CACGGGTAGACGAACAGCACCGTCAGGCCGATGCG 714937 32 100.0 35 ................................ CACGGGTAGACGAACAGCACCGTCAGGCCGATGCG 714870 32 100.0 35 ................................ TTGGACGCCTGGTGGCGCTTCAGCGCGTTGTAGAT 714803 32 100.0 35 ................................ AGCACGGCCATCGGGTCGGCCTGCTGGGTGACCAG 714736 32 100.0 36 ................................ GGCGAAGGCTTCGACCTTGCAGCCATCGCGCAGACC 714668 32 100.0 35 ................................ CCGACGTTCGAAGAGGGCACGCCGCAGTACGTGGT 714601 32 96.9 34 ..................A............. AACAAGTACTGCTGAAGACCAGCCACACGCTGCC 714535 32 100.0 34 ................................ TGAGGCCCCATGGCCCCCAGGCGGTAGGGTGGCC 714469 32 100.0 35 ................................ TCTTGCATGGCTCTCTCCTGAGCTTCGTTGGTAGA 714402 32 100.0 34 ................................ TGTGCCGAACCGTTGGACGCATTGGTCACCTCGA 714336 32 100.0 35 ................................ TTGCGTGAGGAAATTGCCGCCATCCTGGCGGAGGC 714269 32 100.0 35 ................................ ATCCCCGCGGGCACCGTGCTGACCGGCCGCGTCCA 714202 32 100.0 35 ................................ TCTTTGCCCGCACCCACGGCGTGACGCCGCCCGCA 714135 32 100.0 35 ................................ ACATACTTCAACCTCGCAGTCGTATTCCTCCTTAG 714068 32 100.0 33 ................................ TTCAAGCTCGGCGAGGTGTGGGCGCTGATGCGC 714003 32 100.0 34 ................................ TCGTGGCGTGCGATCGCCTTGGCGAACTGGAACG 713937 32 100.0 37 ................................ CCGTCGGCCCCTCTCCCAATCGGAAGTAGCGGTAAGC 713868 32 96.9 35 ................A............... TCCACCAGCCGCGCGCCACCAGGCTTGATCGTGGT 713801 32 100.0 34 ................................ ATTGCCGGGACCTGCTGAACGTGGTTGTCTGGTG 713735 32 96.9 34 .C.............................. ACCGATGTCCTGAAGGGCATGGCGATCGCCGAAG 713669 32 96.9 35 .......T........................ TTGGACACCAAGGGCGTGGGTTCAATCCTGGACCT 713602 32 100.0 33 ................................ CAGGTCAGCTTGTACAAGGTCGAGCCAAGGCCC 713537 32 100.0 36 ................................ GACATCTTCACGGTCGAGGAGATCAGCGGTGGCATC 713469 32 96.9 36 ............C................... AAGAACAGAGCAGGGGAGCGAGAGGAGCACACCGAG 713401 32 100.0 35 ................................ TCGTTCAGCCAGCCGCCATCGCCGGGATGCTGCTT 713334 32 100.0 33 ................................ CAAGGCGGTGAGAACGAGGAGCCACGCGGTGTC 713269 32 96.9 35 .............C.................. AGCGCGGTGCCACCCCACGCGCCGTTGCTGGACTT 713202 32 96.9 33 .............C.................. ATGTTGATGCCGATGCGGCTCCTGCTCATCGTC 713137 32 96.9 36 .............C.................. AGAACCGCGATCTCGCCGCGCTGCTGGGCCTTGGAC 713069 32 96.9 34 .............C.................. TATGAGCACCGCCAGGCCGCGTAGATCAGGCGTC 713003 32 96.9 37 .............C.................. ATTCGTACTGGCTCCGGTAGTTATAGATGGCGCGCGC 712934 32 93.8 35 .............C..............G... TCCTGAGCGAGGATCAGGTAGTTGCGCACCGGAGA 712867 32 87.5 36 .C....T......G.............A.... ATCACAATCACCGCACTGTACGAACAGCACCAAACC 712799 31 84.4 0 ......T......C..-..T..A......... | ========== ====== ====== ====== ================================ ===================================== ================== 37 32 98.2 35 GTCGCGCCCCTCGTGGGCGCGTGGATTGAAAC # Left flank : GCTACCCCGCCTTTCTTTGGAAATGAGAGCGTCCGGATGATGGTCTTGGTCAGCTACGATGTCAGCACCAGCTCCCCAGGCGGCGAGAAGCGCCTCCGCAGGGTCGCCAAAGCCTGCCGCGATCTCGGCCAGCGCGTGCAGTACTCCGTTTTCGAGATCGAAGTCGAGCCCGCGCAGTGGGTGCAGTTACGTCAGCGCCTGTGCGACCTGATCGATCAGGATGTGGACAGCCTGCGCTTCTACCAGCTGGGCGCCAAGTGGGAAGCCCGCGTCGAGCATGTGGGTGCCAAGCCAGTGCTTGACCTCAAAGGCCCGCTGATTCTAACGCGAACCACAAGCGTCCTGGCATATGCCGGCAGGTTCGCGGCCGCGTAATTCATTGTTCCTGAAAGACAATTTCTTTGGAACACCATATCTTAACTGCCCGCGCTCAGCACACCGCGCACGTTCGCGAGAAGTGCGGAATTTCGCAATAGCAGGTAATCGCTTACGCTGGCGCG # Right flank : ACCGCATACGTGGCGCGCACCGCATCGTTGCCAGCGGCCTTGTTTTTGAGGGTCAGACGCCAGCGCGGCTGCGACATGAGAAGGAGAACGGGCGGGGGGGGCGCAGGCTAGCAGTGGCAGGTGCCGCGCAGGCGGGCGCCCGCGCGCTTCAGCCTTCTCATGCGAAAAGTGACCTGCGGAGACGTGTTGCGACCAGTCGATCAGTAGGGCGGTACTCCCGCACAGGATGAGAGGTGACGTGTGCCCTGCGGCCGATGCGACGCGACAGTGGATGGGAGGGAACATCCCCTGTCACGAACGCTGACCGCAGGGCACACGTCGGGTGAGCGCAATCAGTGCCGGTCGACTTGAAGGACAGCCTCCGGCCAACCGGGTCTGGTCAGCGCTTGGCCGAGGCCAGCAGGTCGGCGTTGAACGCTGCGGCGTGCATGGACGTCAGCCGTGCGGCGCGCCGGCATACCCGCGCCCCAGTCCTTGTAGAAGATCCGGGCGCCGTCCTT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //