Array 1 889374-898791 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042908.1 Methanosarcina mazei strain zm-15 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 889374 37 100.0 33 ..................................... TGCACTGTTGCAAATGAACAAAATCCCAAACTC 889444 37 100.0 33 ..................................... TTGTACCCATACCCTAACTCAGCCCAATTTCTT 889514 37 100.0 35 ..................................... CACCAATCACTAGGCAATAAATACGACCCCTTACG 889586 37 100.0 37 ..................................... TAGAAGGAAAGGAAGGCACTAATAAAAAGCTTGAAAC 889660 37 100.0 36 ..................................... ACCACTTACCTGCATATTTCCACTGGAATATTTTCT 889733 37 100.0 37 ..................................... CAGAAGAATACGAACCGATCACACTGAAACCCGACAA 889807 37 100.0 36 ..................................... GTTCGGGAAACTCAAATGGAGTAGTGGCAGCGAAAT 889880 37 100.0 38 ..................................... TCTATAAAAAGGTATCTATTAAAGTAAATTCAAAAAAA 889955 37 100.0 36 ..................................... TAGACGTTTTTTCTCCTAATTGCTTAAGTTCTTTAG 890028 37 100.0 38 ..................................... ATTCCTGTGAATTCTTGTGTGATTACAGATTTTAAAAT 890103 37 100.0 35 ..................................... TCAGATCGGTTTGCCGGTCTGCGTTTCCATCGAAA 890175 37 100.0 36 ..................................... CCATACTTATTTGCATATAGTTTATCTTGCCCTTTA 890248 37 100.0 35 ..................................... ATTGTTCCATTGTTAACATTTTCCTTCCCTCTTGT 890320 37 100.0 35 ..................................... TCATCTCCGGTTATGGGTTACAATCCTTGAAAAGA 890392 37 100.0 36 ..................................... CTGTGGAAGCTGGTACAGGGAGCGTTAAAGTAATTG 890465 37 100.0 36 ..................................... CTTTTCACACTCCTTCCTCAATCTCCACTCCCTGGT 890538 37 100.0 35 ..................................... ATAATTGTGATTATCGGGATTTCGTGCGAATCATC 890610 37 100.0 36 ..................................... CCTAAATTCGTAACTTTGACCTTGATATATTTCGAG 890683 37 100.0 35 ..................................... ATAAAAACAGAAGAACAATATAAGGAAGGTACTAA 890755 37 100.0 35 ..................................... ACGTAGCGTCTTCATAAGAAGAGGCAATAGTAGCC 890827 37 100.0 34 ..................................... TATCCTCGGTTATCCGAATTCAAAAAACTATTAT 890898 37 100.0 35 ..................................... TTGTTTCGTCTTTTTCAATCCACCCGTGGTCTATC 890970 37 100.0 35 ..................................... CAACTTTGAAAGGCGGATAATCTTCTTAATTTCGA 891042 37 100.0 36 ..................................... ATATCTTGATATGTGTATAAAGTCAGCCGTCTCCTT 891115 37 100.0 35 ..................................... CTAGGCAGGCACCAGGGAGTTTTTGTAGTGGTGAG 891187 37 100.0 37 ..................................... AATAGGTTTGTGCCATACTATGCCATACACAAATAAA 891261 37 100.0 35 ..................................... CTCTCGATAGGGTCTGCTGTAAATGCATCGTAAGA 891333 37 100.0 35 ..................................... ATTGTTTTTGTTTTCGTTATCAGGGGAATTTTCCC 891405 37 100.0 35 ..................................... TTCCTCTTAGGAAATTCATTGCCGCAAGACCTGAA 891477 37 100.0 35 ..................................... ATTCCATCACAGACTATACCGCCCACTCCTGCTAT 891549 37 100.0 36 ..................................... ATGCTATAGAATCCCGGTTCATATCCCTCTATGACA 891622 37 100.0 37 ..................................... ATTAATATCACAAAGTTTTACAGCGTGTTTCCTACTT 891696 37 100.0 35 ..................................... TTAACTAAAGGCCAGAACTCAGTGTATCCACCTAT 891768 37 100.0 37 ..................................... CGTTGTTGCGGTAGTGTGTAGCGTTATAGCGTTTTTG 891842 37 100.0 38 ..................................... AAAATCGTGCCATGTCCTCAAGCCCCTGATCTGTGATT 891917 37 100.0 35 ..................................... TTATTCCTGTCTGGGACTAAAACATAATCGTCTTA 891989 37 100.0 37 ..................................... ACTTTGAATTTATCTCGCATGTCATATGTCCAATCCC 892063 37 100.0 36 ..................................... TCATTGTATCCTATTGTTGTCCCTGCCGGGAATTGA 892136 37 100.0 37 ..................................... AGTACTGTGATTAGTGTAGTAGTGGTAGAGTTGGATA 892210 37 100.0 37 ..................................... TTCAAAATGGACAGTTGTCTGATTTGAATATTTTCCG 892284 37 100.0 35 ..................................... TTGAACATGAGGATAAAGAAGTACAGATCTTAAAA 892356 37 100.0 36 ..................................... ATCCCCGTTCCGGCATGGATTAGGGATGAGCTTAAT 892429 37 100.0 36 ..................................... CACTGTTGCAGAAGGTGGAGCAAGCGACATTGTAGC 892502 37 100.0 35 ..................................... TATTCTTGTAAACCATGTTTGTATTACTCCATTGC 892574 37 100.0 34 ..................................... TCCATTCCAACCAGCATCAGTTAAACATATTATG 892645 37 100.0 37 ..................................... AGTATTAAAAAGGCATTATTAGAAAATTGAAGTTCAA 892719 37 100.0 38 ..................................... TTAAAATCCCTTGTAAACTCGTCAATATCTGATACAAT 892794 37 100.0 35 ..................................... AACAAGAACTTAACAGCATCAGAAGACAGCTTAAA 892866 37 100.0 35 ..................................... TCTGAGACTCATTATAAAACCCAAATGCGAATTTT 892938 37 100.0 33 ..................................... CTCGTACCTTATAAATCCCAAAATCAATATTTT 893008 37 100.0 36 ..................................... CATTTCCAACGGCGTATTAATTTTTTCATGTATGTG 893081 37 100.0 37 ..................................... CCTCAAACTTAAACTCATCCAACCTTCTCCACCACTA 893155 37 100.0 36 ..................................... ACTGGCATGGGTACACCATGATTAAACTTGTATCTA 893228 37 100.0 39 ..................................... TTATTTTACGTTCTGCTTCCCCTCTCTCAATAAGTTCAT 893304 37 100.0 35 ..................................... AATAATACATGGTAGAATCTGGGCTGTATGGCACT 893376 37 100.0 36 ..................................... TAGTCACAGGGCAAATGAAGGATGAGTACAAAGGAG 893449 37 100.0 37 ..................................... ACAATGAATGAAAATAGACTCCGTGAACAATCTCCAA 893523 37 100.0 37 ..................................... TAGAATAACTTTTTATACTTGTAAAGCATAGTAAATA 893597 37 100.0 35 ..................................... ATACTTTATTCTATACTTACAATTACCTTTTTTTA 893669 37 100.0 35 ..................................... ATGCATTCAAGTGTATTTTTTATAGATGTTGTCGG 893741 37 100.0 39 ..................................... TATAGTACATAGTGATTCTCAGATTTATAATGTATATAT 893817 37 100.0 36 ..................................... AAAAACGTTTATCAGATTTTTTATCATCTGATAAGC 893890 37 100.0 36 ..................................... AGGTTCCGAACTCAAACTAAAAAATAAGAATATTAC 893963 37 100.0 35 ..................................... TGTAGAGTTACGTGTTAATTCAGGTTGCAGACTCA 894035 37 100.0 36 ..................................... TAATGAACGTTTTTGACTTTCCCAATAAGACGGATG 894108 37 100.0 34 ..................................... CTACATGGACACTGTGACCCCCATTGGCTTAAAA 894179 37 100.0 41 ..................................... TTGGGGGTAGGGGTTGGAATCCCTCTTCCTGGAACTCTATT 894257 37 100.0 35 ..................................... ATAATTCTGTGCGGGCTCTTGTTTTTCTCTAAACC 894329 37 100.0 39 ..................................... TATATATAATACAAGACATTAACTATGTAGCTATTATCT 894405 37 100.0 34 ..................................... TACACAGTTTGATAGCTTCTTTCTGTGATTTTGT 894476 37 100.0 34 ..................................... ATACCATGGCTAAAAAGCAGACCATGGATACAGT 894547 37 100.0 36 ..................................... GTCATGTTGCACATTAAAATAATAAAGTCAGTGTTT 894620 37 100.0 34 ..................................... TGTTGCTGTGTATACTACAATGTAACTAATGTTA 894691 37 100.0 38 ..................................... AAATATCTGTTGACATTTTATTTCACCTGTTTGATTTG 894766 37 100.0 37 ..................................... AGAACTGCAGTTATAGGCGTGTTCATTTTCGTTATCT 894840 37 100.0 35 ..................................... ATCTCGTCTGAAAGTTCAGGAATCAACTCTAATTT 894912 37 100.0 38 ..................................... GTAGTTGTCACTGATTCCATTGCAATACCAACGACAAT 894987 37 100.0 36 ..................................... AAAATCTGTCGTAATTAAATATAAAAGTATTAAAAG 895060 37 100.0 34 ..................................... ATAATTATGATTATCGGGATTTTGTTCTAATCAT 895131 37 100.0 34 ..................................... CCGAAGAGATAAGCTGGAAGTCGGCGGCTGACAA 895202 37 100.0 35 ..................................... CATCACAGTAGAACAAAAACGAGAGTTGAAAACCT 895274 37 100.0 33 ..................................... TAATAACACAATTCGGAGCAGTGGTATAGGCGG 895344 37 100.0 37 ..................................... TCTCCTTGATTACTGAATTTCCTGAGATTATATCCGC 895418 37 100.0 36 ..................................... TTCATCAGTGATTTTTTCCAGTAATACAATTCACTT 895491 37 100.0 34 ..................................... GTCAATATGGCATCTTTGTCTGGAATATAGGGGA 895562 37 100.0 37 ..................................... AGCAATAAAATAAGAAGGATGTTTAGTCGACTAGATA 895636 37 100.0 35 ..................................... TGTAATAGTCGAGTAAACAAACGCATAGGCAAAAA 895708 37 100.0 34 ..................................... AGCATTTCTATTAGTGAGAGAGCTACGTAACACA 895779 37 100.0 35 ..................................... TCCGAGGTTTTGATATGGTCATGCCGGCAGAATGG 895851 37 100.0 38 ..................................... AGAGGTAAGGTAAAAATGCTACCACGTGAAAAATTAAT 895926 37 100.0 35 ..................................... AAACCGTAAGCGATTGACACGGTTAAAAAGTGCCT 895998 37 100.0 36 ..................................... TTCCCGTTTGCCGGAAGTTGGTTGGCTGGAATTGTA 896071 37 100.0 37 ..................................... GACGTTACGGCACGGGTATATATACTTTTCAATTCGT 896145 37 100.0 35 ..................................... CTGGGTATATCCCAGTACTTTATCCATCCTGTTCT 896217 37 100.0 34 ..................................... TTAATCCAGCATTCCCCTTGTAATCGTGATACTG 896288 37 100.0 34 ..................................... AGCGTTCTCATCCCGACATGACCGCAGGAGACGC 896359 37 100.0 36 ..................................... ATAGATTGTTCAGTTGTCAATCCGTTGTCAGCTTGT 896432 37 100.0 38 ..................................... TTTATATGTTAACACTGTTAACGACTGTCTCAAAAAAA 896507 37 100.0 35 ..................................... AATCAACTCCATTAAAATTCCTGGTAAATCCCATC 896579 37 100.0 35 ..................................... ACCATGATATACACCGAATCAGAACCGGCTTTCTG 896651 37 100.0 36 ..................................... TATATATACGATATTAAATTCATTTTAGATCTTATT 896724 37 100.0 36 ..................................... TTTCTGATATCAGTTTGTCAAGCTTCTTTTTAAGAG 896797 37 100.0 35 ..................................... AGACTTAACTATGCTTGTATCTTAAAACTCGATAT 896869 37 100.0 34 ..................................... TTGTTTCGTCTTTTTCAATCCACCCGTAGTCTAT 896940 37 100.0 35 ..................................... TAAAAAAGAAATCAATAAGAGAATAACGTTTTTCA 897012 37 100.0 35 ..................................... TATCTTTGAAAAAATCCGTATGTACGGGAAGCTTC 897084 37 100.0 36 ..................................... CTTCATCTAGTTTATTCCGCAAAAGCTCCTTTTCTG 897157 37 100.0 37 ..................................... GTGGTCCTATGATCAATGCAAGATAGCCGGGATTGAT 897231 37 100.0 36 ..................................... TTTGGATGGCTTGCCGTCCTCTATACCTTTCATCTT 897304 37 100.0 35 ..................................... CAGCTAAGGTTTTACTCATATCGTGTGGCTCCGAC 897376 37 100.0 35 ..................................... ATTGATACGGAAGTGATGCGGTATAAGCTCCCGTT 897448 37 100.0 34 ..................................... CTGCCCTCAAGGATCAGGCTTTAGAGGTTGCAAA 897519 37 100.0 36 ..................................... CGCTGATGCTGTTAGCGTTTCTCTATAAGTTCAATT 897592 37 100.0 34 ..................................... TAATTATGTATTTTTTTTGCATTGTTGTGGTATG 897663 37 100.0 36 ..................................... TGCGTCCCCCTGAATAATCCCCATATACCACAAATT 897736 37 100.0 35 ..................................... AAAAAAAGAATTAAAAGAGTAAAGGAATTTAGATT 897808 37 100.0 35 ..................................... TTATCGAGTTATCGCCATAAAGTATAAATAGTATT 897880 37 100.0 37 ..................................... TTGAAAGTATTCGCAATATAAACATGCACAATAGGTA 897954 37 100.0 36 ..................................... GTATAATCAGGAGCATACTTAAACGTTAATTTCATA 898027 37 100.0 37 ..................................... ATTTCCACGTCTGCGCCTAATGTCGTGTCGTCCCATA 898101 37 100.0 37 ..................................... AAGAGGGTGTCGATTATTTCCTCTTGCATTGTCTTCT 898175 37 100.0 35 ..................................... CTTTTGGGACTCCTGCAACACTCACCTGCAAATAT 898247 37 100.0 37 ..................................... ATTTTACTAAGTGCGCAAAAGCGTTTTTTAGATCATT 898321 37 100.0 35 ..................................... TAGACCCCGCAAGGCCCAGAAGTGCGGTCCTAACA 898393 37 100.0 36 ..................................... TTTCATAAATTCGAGTCACATAAATATCCATGATTG 898466 37 100.0 35 ..................................... TGCGGCTTTATCTATTCAGGAATCTGAACTAAAAG 898538 37 100.0 35 ..................................... TGGGAGGATGATAAAATCAACTCTCAACCCTAATA 898610 37 100.0 36 ..................................... ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 898683 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 898755 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ========================================= ================== 130 37 99.9 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATATTTTTATTGCCTCAAAAAAGAACCATATAAAAGGAATCGTTGACGAAGTTTTATTTCTGGAAGACGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 1679224-1688358 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042908.1 Methanosarcina mazei strain zm-15 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1679224 37 100.0 38 ..................................... TGGTGAAGAGGTCTCCTATTTGAATAGCAAGAGTTGTT 1679299 37 100.0 34 ..................................... TAATAATCGTGTAGTCCGCCCCGGTCACGAAGGG 1679370 37 100.0 34 ..................................... TTATTATGTCAATTTATGCGCGGAGAAAAAACGG 1679441 37 100.0 36 ..................................... TCAGATCGGTTTGCCTGTCTGCGTTTCCATCGAAAT 1679514 37 100.0 34 ..................................... TAAAAATGTAGTAAGGACTAGGGCAGAAACAAAA 1679585 37 100.0 34 ..................................... TAAAGAATATGCACTTTCGAAAAATACTGTTTAT 1679656 37 100.0 34 ..................................... ACAAGAGTTAAAGAACGCGCTTCAATGCCGGAAG 1679727 37 100.0 34 ..................................... TTATAATAGTAACAATCTCATTATAAACCCCCAC 1679798 37 100.0 36 ..................................... TATCCGGCATACAGAGCCATTATTAATTGTACCAAA 1679871 37 100.0 37 ..................................... ACAATATGAGTTACGACCCTCACAGCTTGATAGAGGT 1679945 37 100.0 36 ..................................... ATTACCATCAGTGTACTTTCGATGACACGGGTTATG 1680018 37 100.0 34 ..................................... AGGACTCCTGCCCGGTTCCGTTGGTCATGGAGAG 1680089 37 100.0 35 ..................................... ATACAAGTCCCTCTAAGCGCATGAAATGGTCTTCT 1680161 37 100.0 35 ..................................... AGATTAGCAATAACGTATTCGATAATTGCAGAGGG 1680233 37 100.0 35 ..................................... TAGAGTAATACGTTTAATCTTGTTTCAGCATACTA 1680305 37 100.0 37 ..................................... TGACCTCGGATGATTTCGGGGCGAGCTATACTGCTCA 1680379 37 100.0 36 ..................................... AGCGTTGTAACGGGTGTAACGGGTGTAACGGGTTAA 1680452 37 100.0 36 ..................................... TAGTATTAAGTACTAGTACTAGTACTTAGAGAAAAG 1680525 37 100.0 39 ..................................... TTTTTTCACAGGCTGGCTGTGATTCTGACCTATCCGGAC 1680601 37 100.0 36 ..................................... TTGATCGGGTCAAGTTTTAGCACTCCTATGCGGTCC 1680674 37 100.0 36 ..................................... ATGGTTACGGCGACCTCAACCGGGATATAGAAATTC 1680747 37 100.0 34 ..................................... CCGGCCCCGTTGTGACCTCACAGAATATATTCAT 1680818 37 100.0 38 ..................................... CACTAGATGTATTATCCAAACCTGTGACCTTACTGGAG 1680893 37 100.0 35 ..................................... GGGTATTATTGTAAATGAAATATAAAAATAGAATG 1680965 37 100.0 34 ..................................... CCAAAAAACTTCCATTTTGCGCGTGTTAAGTGAT 1681036 37 100.0 36 ..................................... TTCTACGCGTCACAGGATTATACAAAGCCCTAAGAT 1681109 37 100.0 36 ..................................... TAGAAGTTCGGGTATCGGCGGCGGTATTACTGGAAT 1681182 37 100.0 36 ..................................... AGACGTTTTTCAAGTGCTTCGTCTACTTTCTCAGGG 1681255 37 100.0 37 ..................................... ACAAGGAGGGACTAAAACATGTCACTCTATAACATGT 1681329 37 100.0 36 ..................................... CACCGAGCACCCTATGAGTATTTGTAAAAAAAATAT 1681402 37 100.0 36 ..................................... TAGATATTTGTGTGCCATCTGATGAAATAGAGCCAG 1681475 37 100.0 36 ..................................... TAGGGCAGACTCTCAAGACTCTTGTCTCTCAATCTG 1681548 37 100.0 37 ..................................... TCAAGCTCCTCTATTTCTCTTATAAGTTGTTCTTCCG 1681622 37 100.0 35 ..................................... ATTTCAACTGTTTCTTTTTTGTCTATTTTTTTGAT 1681694 37 100.0 38 ..................................... GTTGCAAGTAGATTCTTGCAGCCGACATCTTCGGCGAT 1681769 37 100.0 35 ..................................... ATCAAGGAGAGAGAAAGCTTATCAAGCGACGTTGA 1681841 37 100.0 35 ..................................... TTGTTGCGGTTCCGGTTGCGGGAACTGCTGAATAA 1681913 37 100.0 36 ..................................... GTCGATATCTTCCCAAAATGTCTTTCCATTGTTTTC 1681986 37 100.0 37 ..................................... GTATCCTGTTCATATTTTTTACCTCAAACTTAAACTC 1682060 37 100.0 34 ..................................... ATCCACAGAAAAACGTGTGTAAAATATGTATAAA 1682131 37 100.0 35 ..................................... TGCTTTGGTCCCTTGTGTAGCCATATTAGCTATCG 1682203 37 100.0 34 ..................................... ATGTCATAAGAGTATATGGATAGTATGAGTTAGG 1682274 37 100.0 36 ..................................... TTGTGTGCAAAACTCATATGCTGAATTTCTTCGGTA 1682347 37 100.0 37 ..................................... CCAGGTAATATTTTGTAAGTGGACTCCTGTATTTCGA 1682421 37 100.0 37 ..................................... GTATCTTCCTGTACTCATCAAAAGGAGTTTCAGAAAC 1682495 37 100.0 35 ..................................... CTATTCCATGTTTCCACAGGAAGCAGGGGTTAAAA 1682567 37 100.0 36 ..................................... ATACGTTTTTCAAAATCGTAAAACAGTTTTGCAGTC 1682640 37 100.0 35 ..................................... TAAACTCTCCTTCAACGAAGGCGTGTCAAAGATGT 1682712 37 100.0 35 ..................................... TCCAATGCATCTGAAACAACTGCTGATGCGTTAAA 1682784 37 100.0 36 ..................................... TGCTTCATGGCTTGTTCATAAGCAACGTTCCAATCA 1682857 37 100.0 35 ..................................... TTACTTGATTAGCTGGCATTAAACAACCTCTTATT 1682929 37 100.0 36 ..................................... TTAATCGGAATTTGATGGCGTGAACATTGCAGTCCT 1683002 37 100.0 34 ..................................... AGCATGAAAACCCTGTATTTTTTTTTGATGCTTA 1683073 37 100.0 37 ..................................... AAAGTTCAAAGGAGCCAAAACAATGAGTTTTAAATGC 1683147 37 100.0 36 ..................................... GAATGCCAGTCGAAGATAGTTACGAGGATCGTTTAT 1683220 37 100.0 38 ..................................... AGCCCTCATCGTCATGCATTATTATTCAAGCTCCGCGT 1683295 37 100.0 34 ..................................... AATCAAGAATCATGGAATGAAGTATTACGGAGAG 1683366 37 100.0 37 ..................................... TGTCCTAAAATGGCTGTGGGAAGCCGCCGATGGACTC 1683440 37 100.0 35 ..................................... TATGGGGAAAGTAAGGAAAGATGGAAATTGTAGAA 1683512 37 100.0 35 ..................................... CAATCATCGGTTTTTTTAAGTTTCTTTCCCAATAT 1683584 37 100.0 35 ..................................... TAATAAATTAAAAACGTTGTCATATTAACATGCCT 1683656 37 100.0 35 ..................................... TTTTTCAGCTTTCATTTCTGAAGCTGCCCTATCCC 1683728 37 100.0 35 ..................................... AAGAGTATAAAACACTGTTGCGTTAATAACATTAT 1683800 37 100.0 36 ..................................... TTTTCTCCATATCAACTGTAGCTGCATTCACTGTTG 1683873 37 100.0 35 ..................................... TTTTTCAGCTTTCATTTCTGAAGCTGCCCTATCCC 1683945 37 100.0 35 ..................................... AAGAGTATAAAACACTGTTGCGTTAATAACATTAT 1684017 37 100.0 36 ..................................... TTTTCTCCATATCAACTGTAGCTGCATTCACTGTTG 1684090 37 100.0 37 ..................................... TACTTTTGCAAGTGTATCATTAATATAGTTCTTGTTT 1684164 37 100.0 37 ..................................... TGGATATAATGCCAGTGCTACTAGTGGTGGTGTTAGT 1684238 37 100.0 35 ..................................... TTAGGTAAAGCTGTACATGCAGATGAAGCTGCAGA 1684310 37 100.0 36 ..................................... TATGAATGAATGCATATACAGGAAGTTTGGGCAATG 1684383 37 100.0 37 ..................................... ATCTATAAGTAATTAATTTTGGGGGTTAACGAATTGA 1684457 37 100.0 37 ..................................... CACAAATAATAATATCTAGTGTTGCCCTCACCAAATA 1684531 37 100.0 35 ..................................... AATACCAACTTCTTAGTACACACACGTATATACGC 1684603 37 100.0 35 ..................................... CTTCTTTTTAGTGCCTTTTACAACTCTAGCGTTTG 1684675 37 100.0 36 ..................................... ACCGCTAAAATCCAAAAAGCCCCCGGTATTCCCCGG 1684748 37 100.0 37 ..................................... ATAAGGCATAACTGAGTATTTTTTTTACACACTCAAT 1684822 37 100.0 37 ..................................... TCCCATATTTTAACATCGGTCCAGCCGTCACAAACAA 1684896 37 100.0 37 ..................................... ATCAGGGCGGCATCTTCGACTAACCCGGCCTGGTAAG 1684970 37 100.0 36 ..................................... TACTATAACTTTCTAAAAACGGCAGAAAACGGACGA 1685043 37 100.0 36 ..................................... GTTCCGCTTTTGTCTGGTTCAAACTCCCCGCGAATA 1685116 37 100.0 39 ..................................... CTCTCCTGGACACCTTCCACGCAGGGGAAAAGGGGAAAA 1685192 37 100.0 36 ..................................... TTTTACCGGGGATGTGACAGTCAGGGAATACGGCAT 1685265 37 100.0 35 ..................................... CTGTAAAGTTGTATGTCGCATTGTCACTTGTTGAT 1685337 37 100.0 34 ..................................... TGCGTCCTTTGTGGGTAGGGTTTAATCCTGGCGT 1685408 37 100.0 36 ..................................... ATTGAAGCTGGCAAATGATCCAAGATAACTTTCTGA 1685481 37 100.0 37 ..................................... TCAAGCAGGCAGTTAACCCTATAAAAAACGTGGAGGT 1685555 37 100.0 38 ..................................... TCCAGGGGTAAGTATCCACTGCACTCCTTCGCCCATAT 1685630 37 100.0 35 ..................................... TTCCTCCTTGTTAATTTTAACTTCTTTGAATCCTC 1685702 37 100.0 37 ..................................... TTTTGAGGGTCACACACTTGTTCAAGAAGACAGATAG 1685776 37 100.0 36 ..................................... AATACTGTTTTTTGATTTGGAACTTTCGACACATTG 1685849 37 100.0 35 ..................................... TTATTGAGTTATCGCCATAAAGTATAAATAGCATT 1685921 37 100.0 36 ..................................... CGATGTGAAAAGACGACTTCTAAAAGTTGTTAAGAG 1685994 37 100.0 36 ..................................... CGAGCATATTAAAGACAGTGAGCTCGCTCCAATCCA 1686067 37 100.0 36 ..................................... AAGCAGCTGAAGGAAACAAAATAATAACGGCTGACT 1686140 37 100.0 37 ..................................... TACTAAATATCCTTTTGGAAAGTGAGTATCATTTAGA 1686214 37 100.0 35 ..................................... CAGACGATACCATCGCGACTTTGAAGCAAAGCACT 1686286 37 100.0 34 ..................................... CCAGGGTGTCCCGGATAACAACGCCCGCCGGGAT 1686357 37 100.0 34 ..................................... AATCCAGGGTCCCCGGCTTGTAATAAAGATTAGT 1686428 37 100.0 34 ..................................... TGTCCAGGGCGGATAAAGCCCCCCTTTCTCTGGA 1686499 37 100.0 34 ..................................... CTCTGGTCAATGTTTGCAGGAGGGACCAGGTAAA 1686570 37 100.0 36 ..................................... AACCGCCTGGGCTTCGCATCCACGAAAATATTATTT 1686643 37 100.0 36 ..................................... TTAATCAGGTATAAATTAGAGGTTCCAGAGGTAGGG 1686716 37 100.0 36 ..................................... TGAATTTTCGGAACTCCTCCAGGTCCTCCATTATCT 1686789 37 100.0 37 ..................................... TTACTGCCTGCTCGTCCCTGGGGTCCTCCAGCATCGA 1686863 37 100.0 34 ..................................... ATGATGTCCTTTGTATTTGCTTGATAGACGGGCA 1686934 37 100.0 38 ..................................... TCCAGTTCTTCTTTAGTCTTCTCTATTTCGTCCCAGAG 1687009 37 100.0 35 ..................................... TGCCCATAGCTTGAAACTGGGGGGCATATTCCCGG 1687081 37 100.0 37 ..................................... ATTATCCTGGTTGAAATGACCCGTTCCCCTTCGTGGA 1687155 37 100.0 36 ..................................... CTACTATGTCGTCGTCGTTGGTCCCCTTCATTACTG 1687228 37 100.0 37 ..................................... TGGGATGCAGCCGAAAAACTCCCAATAGCCAGACCAG 1687302 37 100.0 34 ..................................... GAGAATGGCAGAAAAAACGGAGACAGTGAAAAAG 1687373 37 100.0 35 ..................................... CCAGGGTGTCCCGGATAACAACGCCCGCCGGGATT 1687445 37 100.0 37 ..................................... CACCCTATTATCGTGTAGCTGATTGATTTTTTCAATT 1687519 37 100.0 38 ..................................... TAAGTGGTCGGTTTCGTGTTGGATAGATAACGGGATGA 1687594 37 100.0 37 ..................................... ATTCCCAGGAAAAAACCAATGACGCAACCCAGAATGA 1687668 37 100.0 34 ..................................... CCATCTGTGGCGGCTGCGGTTGCTGAAGCGCCTA 1687739 37 100.0 35 ..................................... CCAGCCTGCTTAACACCTGGAGGACAAACTGGGAT 1687811 37 100.0 37 ..................................... TTTTGTTAAGTTCGGTGTTAATAAGTTTTAAAAGATT 1687885 37 97.3 36 .....C............................... ATAACTGAATTATGAATGATAAATCATATGCTGTAG 1687958 37 97.3 37 .....C............................... TTTTGTTAAGTTCGGTGTTAATAAGTTTTAAAAGATT 1688032 37 97.3 36 .....C............................... ATAAACACTGTTCCGGATCAAATCCTTTTTGATAAA 1688105 37 97.3 34 .....C............................... TATCACTGGTCACACTCTTAATATTTGGTGACGT 1688176 37 97.3 36 .....C............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 1688249 37 81.1 34 GG...A...T.GCT....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA A [1688254] 1688321 37 81.1 0 .G...A...T.GCT......................G | A [1688328] ========== ====== ====== ====== ===================================== ======================================= ================== 126 37 99.6 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : GTTGTTCTTTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTAAGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAAAACCAGACTCTAGCCAAAATACAACTGAAACTATACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGGTCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACCGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 1701480-1703560 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042908.1 Methanosarcina mazei strain zm-15 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1701480 37 100.0 37 ..................................... GGACATACAGGCTTTGCTTTCGCTGTCGTGCCGTTTG 1701554 37 100.0 33 ..................................... TTATTCAATGCAATATATTCATATTATTCAAAA 1701624 37 100.0 35 ..................................... TTTGAGCAATAATAGGCGTCATTGGAGCCCACATG 1701696 37 100.0 37 ..................................... ATTATCAAGATATTTCCGCGAGTAATAAATCCGAATC 1701770 37 100.0 34 ..................................... CTAATTGGGTTACTATTTTGTGTGTTGGTAGATC 1701841 37 100.0 34 ..................................... ATATATGCTTCCGGGGATAGACAATAAGTTTCAT 1701912 37 100.0 37 ..................................... GGAAGTCTTCGTCTTTGAAGACTCTCTGAAAACCTGG 1701986 37 100.0 37 ..................................... ATTCTTCCATGAAATATATCCTGCCATACAGTTTTTT 1702060 37 100.0 38 ..................................... ATTCATTTTTAAGCTCGTCTAATGTCTGTTGTGCTAAA 1702135 37 100.0 34 ..................................... CAGACAATATCAGCAGGTGGAAAGAGGGGGATTT 1702206 37 100.0 35 ..................................... GGAAACTTCTTAATAGTTTGCTTCCTGATTTCTTC 1702278 37 100.0 36 ..................................... TGGGACCATCGCGGACACCGGAGCGACCACAGTAGC 1702351 37 100.0 35 ..................................... ATTTTTTTCTTCGCGCATGAGTACAAACATTTATA 1702423 37 100.0 38 ..................................... TAATCAATATCAAGTTGGTCCCATATGGCAATATTATA 1702498 37 100.0 40 ..................................... ACCGTGATGTTGAACCATTTGTTTTCGATCTCAATAATTC 1702575 37 100.0 36 ..................................... CCTAAATTCGTAACTTTGGCCTTGATATATTTCGAG 1702648 37 100.0 36 ..................................... CTTTCATTTCCCTCACACCCTAATTGGAATCAAAAA 1702721 37 100.0 38 ..................................... CATTGTTAATGAATATACGTTACAGTTAGGTCTGTGTA 1702796 37 100.0 37 ..................................... TCTTTCTCAGTAAATGTGAAATGCTTCTCAAACTCTT 1702870 37 100.0 37 ..................................... TTGGGTGTATAATCCACCCTGCTTCTGTGTATAATTG 1702944 37 100.0 35 ..................................... TTTTGTAAGTCTAATTCATCCCGTATCCATGCCGG 1703016 37 100.0 35 ..................................... AAATCGTGGGAATAATCACAGATCAGGGGCTTGAG 1703088 37 100.0 35 ..................................... AAGATATGGTAGATAAGCACCATATCATACTAAAA 1703160 37 100.0 37 ..................................... ATCCGCTGAACCGGTCACTCCCTACGAGAGACGCACC 1703234 37 100.0 35 ..................................... CCTATGTAACCATCAACCAGATGGAAATCAAGAGT 1703306 37 100.0 35 ..................................... TTTCAGGGTTTGGAAGGGTCGAAGGATTGACTACT 1703378 37 94.6 35 .............A....T.................. CTGTCTTTTCAATCTCAGTTAGTTGTTTTGCAATT 1703450 37 86.5 37 .....C.......A..............A..C....T GCAGACGAAAAACGCAAATAAGAGAACAGACAAAATC 1703524 37 86.5 0 .............A....T........A.....G..T | ========== ====== ====== ====== ===================================== ======================================== ================== 29 37 98.9 36 ATTCGTGAGCAAGGTCCACTAAAACAAGGATTGAAAC # Left flank : AAACCTTTGAATGAAACAATAAAAGGTTCATCAAATATAGTTATCACGCAGTTTACATGTCTCTGAATTTTGGAGAGGTAACAATGAGTATGAACGAAAAAGTTGTCAGGCCTGAAAATAAAGAGTGGCATATGTAATATACTTCCTGTCACACCTGTGCCAAAAAATACGGAATTACGTTGTTATCGTGACCGAAGTTTTAAGTAAAGTACTCTCACCTGCTTTCGTATGTCTTCCTGAGGAAGGATCTTCCCGCTTTTTTTCACACCTTCAAGATAAATTATATTCGCAGTAAACGTGAAAAAGAATATGCACAAAAAATACCATCAAAAACAAAAGTTTAATAAAAAGAAAATCATATGTCAAGATGTTTCTAAATTATTAAAAACCCTGTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTATCCCCAAAAAAGGACTCATTTCAGGCCTTTACTAGCCAAACAACGGAAATTTTTGCCCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGCTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAGAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCCAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATATGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTGCAATCAATGAATGTTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGGTCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //