Array 1 428025-429150 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTM01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain 28 NODE_2_length_697716_cov_25.6672, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 428025 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 428086 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 428147 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 428208 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 428269 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 428330 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 428391 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 428452 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 428513 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 428574 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 428635 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 428696 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 428757 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 428818 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 428879 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 428940 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 429001 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 429062 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 429123 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 445409-447515 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTM01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain 28 NODE_2_length_697716_cov_25.6672, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 445409 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 445470 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 445531 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 445592 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 445654 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 445715 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 445776 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 445837 29 100.0 32 ............................. CTAGGCACTAACTCGCAGTATCACTCCCTGCC 445898 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 445959 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 446020 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 446081 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 446142 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 446203 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 446264 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 446325 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 446387 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 446448 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 446510 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 446571 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 446632 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 446693 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 446754 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 446815 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 446876 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 446937 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 446998 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 447059 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 447120 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 447181 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 447242 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 447303 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 447364 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 447425 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 447486 29 89.7 0 A...........TC............... | A [447512] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //