Array 1 216339-214417 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYA01000002.1 Salmonella enterica subsp. enterica serovar Monschaui strain 06-0064 NODE_2_length_557238_cov_4.61035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216338 29 96.6 32 ............................A TGTTTGATCCGGCATTTGTGGCGGGGTGAGCA 216277 29 100.0 32 ............................. GCCGCAGAAACCTGGCTAACCGGCACCGAGGC 216216 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCACTA 216155 29 96.6 32 ............................C GTAAATTTTACTGTAATCAATTGTGCTGTCCC 216094 29 100.0 32 ............................. CTAAAAATGGATGTGGCGCCGTAGGGGTTTGC 216033 29 100.0 32 ............................. GAGCGCAGGGATGAATTACGATCCACGCAATA 215972 29 100.0 32 ............................. AATTTCCGGTTGAGCACCAGGAATACATCAAC 215911 29 100.0 32 ............................. CGCAGGGGCGCCCGCTGTGGCTCCCGGCAGTG 215850 29 100.0 32 ............................. GGCGGTTAAACCGCCCTTTCTCATATTTTCCA 215789 29 100.0 33 ............................. TTCCCCGGCAATCTGTTTCAGTGCTACTGGGGC 215727 29 100.0 32 ............................. CCTTGATTTTGAACCCGCTGGCGAACTGGATA 215666 29 100.0 32 ............................. GCGCAGCAAATTATTACTATTACGTTAACTGA 215605 29 100.0 32 ............................. GCTGTATTTATCGAATTACGCTGCGAGCTGCG 215544 29 100.0 32 ............................. AAAACCCGCGAGGCTAATCTGACACAGGCGCA 215483 29 100.0 32 ............................. GCTATAAATGGCTGGTCGAGGCTAACGAATAT 215422 29 100.0 32 ............................. CAACCAGTGGCCTGCGCCAATCACCGAAGATT 215361 29 100.0 32 ............................. CATCGACTTCGGCATAGCGGATTTCTAAGCAG 215300 29 100.0 32 ............................. TTCCCGCGATGGGATAGCTCAATCAAAATCAG 215239 29 100.0 32 ............................. CTGCTGAGTAGCGTGATCAGGTCGTCAATTGG 215178 29 100.0 32 ............................. GCTCTCAGTTTGATGGATGGGAAAAAACGCTT 215117 29 100.0 32 ............................. GCGGGAAACTAAACAGGGCCACGTTTGCGGTT 215056 29 100.0 32 ............................. GTATTGCGCCGCCTGGTTGAGCGTTACGCCGA 214995 29 100.0 32 ............................. TTTCATGACCGATGAAGTGACAACCAACGACG 214934 29 96.6 32 ..............T.............. TTATATCCCCCCTCCTTGACGTTCTCTTCGGT 214873 29 100.0 32 ............................. GGACGAAAACGACGTCCGCTGCGTAAAAACCC 214812 29 100.0 32 ............................. AACTAGCGCCTGCTCCGGACGGCTTGCCCTCT 214751 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 214690 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 214629 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 214568 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 214507 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 214446 29 93.1 0 A...........T................ | A [214419] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGATTGTGGTCACAGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 234419-232499 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYA01000002.1 Salmonella enterica subsp. enterica serovar Monschaui strain 06-0064 NODE_2_length_557238_cov_4.61035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 234418 29 100.0 32 ............................. AGAGTGAAGCGTGGAAGGCGCAGATTCGTGGC 234357 29 100.0 32 ............................. CACGTTTAAAACGTGCAAGTTTTATTTTTCGT 234296 29 100.0 32 ............................. ATGGGCGCATATAACCGCGCCCTGAAACGAAC 234235 29 100.0 32 ............................. CGCGACGCGCGTGGGAGGTTCGAAAAAGAGAA 234174 29 100.0 32 ............................. CCGTCGCCGTCGCAGCTACCGAAGCCGTAGCC 234113 29 100.0 32 ............................. GCGATCAACAAGCTGGAACGGCAGTATTTAAA 234052 29 100.0 32 ............................. CAAGTGAGGTTGCATTTAGTGTTGCGACAAAA 233991 29 100.0 32 ............................. TATGATTTCTTGCGGAAAATTCAGTTTTTGAG 233930 29 96.6 32 ............................T TCATCAGCACAGACGTTAATTGATGCCAATAC 233869 29 100.0 32 ............................. CAAACGATGCAATCATCGGCATGTTGTGCTCA 233808 29 100.0 32 ............................. GTGCATCAAAAGTTGCAGCAGAATCGAACATG 233747 29 100.0 32 ............................. GTGCATTCCGGCAACATAATTGAGTTTGCCAA 233686 29 100.0 32 ............................. CGAGCACTGGCTAAGATGCCACTGTTGAAAGT 233625 29 100.0 32 ............................. TTCTTTGGGTACGATACCGGATGGCGCGCCAA 233564 29 100.0 32 ............................. TTGCCGGTTAATGGCGTGGCGATGCCTGACAA 233503 29 100.0 32 ............................. CGTGAAATGGGGCGGCGCATGAACATTAAATT 233442 29 100.0 32 ............................. GCTGATACGCAGACGATCACGAGCTATCTGGG 233381 29 100.0 32 ............................. CAAAACGATCCCAGCGCTTACGTTAAATTTAA 233320 29 100.0 32 ............................. GCTCTCTCGATGCTGAAGCCAGTGAAGGTATT 233259 29 100.0 33 ............................. CTGACGGGGTGCATTTCTCAATACCGGTGACAC 233197 29 100.0 32 ............................. CTCATAGAAAAATGGGACCCACGTTTCTTTAC 233136 29 100.0 32 ............................. GTAAAAACGGCGGCTGATCTTCCGGTAAGTAG 233075 29 100.0 32 ............................. TCCACGTGCGTGGTCAGTTCCCGTCATCGTCA 233014 29 100.0 32 ............................. GAGGGCTGGATGAGATTAAAAGCGGGCGGGGT 232953 29 100.0 32 ............................. GCGGCGAATATCATGATCGTTGTCCCGATCAG 232892 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 232831 29 100.0 32 ............................. GTTGGCTGTAGTGTTGCAACGCTTGAGGAAGC 232770 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 232709 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 232648 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 232587 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 232526 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //