Array 1 62195-62691 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 62195 33 100.0 33 ................................. TGACAAGGCAAGCCATTTTGATTTTATTGATGT 62261 33 100.0 32 ................................. ACAACCGAGCAGCGCGTGGAAGCCCTGAAATA 62326 33 100.0 33 ................................. GAGTTGCGAGATACGCCCGGCGGCTAGGGCTTG 62392 33 97.0 35 G................................ TGTGATTACCTGCCAAACCGCCTGAATTACATCAA 62460 33 97.0 34 G................................ AACTGGATGCTACTTCGCCGTGACGCGGTTAATA 62527 33 100.0 33 ................................. ACTGACGGCACGAAATTAAAAATCACGTCATCG 62593 33 100.0 33 ................................. GCTATCGGGGCATATCCTGATATATCGCTTGCC 62659 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= =================================== ================== 8 33 98.9 33 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GTGTAACGGAAAAGGCTATGTTATACTCGCGTTCACGCTTTTCTTGGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATAGAGCAAGGCTTTTAAGAGAGGCTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTGGCGTTTGACTTCGGTAACGTTGACTTTGACGGGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAGCATGACACGTTACGGAAACAGACGGCTAAAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGTTATCAACCCTTACAAAATCAGCGAATACGGCACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAAGTAGCGTCAAGGATTTTGTTACGGGTTTT # Right flank : CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCAGGCGGCTGTGTGTTGAAACACGATTACATCTTGTTGCCTGACGTGTTTGCCGAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCCAATCTTGGTAAAAGCATCGGCAAAGTATTTACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAAACATCTGATTATGATGACTGTTATATACATTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAATACTACAAATCAGCAAGCCAGCATCAAAAGTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGATAAGAAACTTATATTTTTTAGGAGGGGGGGGCGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCCCTCAAAAAGTGGGTAAAGATTGGTTTTTGAATCCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 62855-63283 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 62855 33 97.0 33 A................................ GCCAATCTTGGTAAAAGCATCGGCAAAGTATTT 62921 33 97.0 33 A................................ AAAACATCTGATTATGATGACTGTTATATACAT 62987 33 100.0 33 ................................. AAATACTACAAATCAGCAAGCCAGCATCAAAAG 63053 33 100.0 34 ................................. GATAAGAAACTTATATTTTTTAGGAGGGGGGGGC 63120 33 97.0 33 G................................ CCCTCAAAAAGTGGGTAAAGATTGGTTTTTGAA 63186 33 100.0 32 ................................. TAAAGGTGTTAAAAAGACAGGTAATGTTTTTA 63251 33 93.9 0 A...............................N | ========== ====== ====== ====== ================================= ================================== ================== 7 33 97.8 33 TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : AAACGAGTTGCGAGATACGCCCGGCGGCTAGGGCTTGGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTGTGATTACCTGCCAAACCGCCTGAATTACATCAAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAACTGGATGCTACTTCGCCGTGACGCGGTTAATACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACACTGACGGCACGAAATTAAAAATCACGTCATCGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCTATCGGGGCATATCCTGATATATCGCTTGCCGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCAGGCGGCTGTGTGTTGAAACACGATTACATCTTGTTGCCTGACGTGTTTGCCGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCAGGCGGCTGTGTGTTGAAACTGCAAAAGCAAAATTACAACCTAAGAGTATAACGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGGTTTGAACCCTGTGTAGGCAGGAGCTTTTGCCAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCGTAACAGATTTCAGGATCATCATGACGAGGAAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCACCCTGCTGGACAACTTGCCATACTCTACCGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 63445-63680 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 63445 34 97.1 33 ................................G. TTTGAACCCTGTGTAGGCAGGAGCTTTTGCCAA 63512 34 100.0 34 .................................. CGTAACAGATTTCAGGATCATCATGACGAGGAAA 63580 34 100.0 33 .................................. CACCCTGCTGGACAACTTGCCATACTCTACCGC 63647 34 88.2 0 ..............................NNNN | ========== ====== ====== ====== ================================== ================================== ================== 4 34 96.3 34 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAG # Left flank : TGTTGAAACAAAACATCTGATTATGATGACTGTTATATACATTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAATACTACAAATCAGCAAGCCAGCATCAAAAGTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGATAAGAAACTTATATTTTTTAGGAGGGGGGGGCGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCCCTCAAAAAGTGGGTAAAGATTGGTTTTTGAATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTAAAGGTGTTAAAAAGACAGGTAATGTTTTTAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCAGGCGGCTGTGTGTTGAAACTGCAAAAGCAAAATTACAACCTAAGAGTATAACG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCAATATGCCGTCCGAAAAGCGGTTTGAATTGCGGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTGTAATTATGTCTCAAAAAATAACGAATCATTAAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCTACATCCGTCGGTAGCTTAATCGACAGTGCCGGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCAGGCGGCTGTGTGTTGAAACTGCAAATAAACTATCCCAATGCCGACCCCGCCCGCCCAGCCGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 63776-64010 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 63776 33 97.0 34 N................................ GCAATATGCCGTCCGAAAAGCGGTTTGAATTGCG 63843 33 97.0 34 G................................ TGTAATTATGTCTCAAAAAATAACGAATCATTAA 63910 33 100.0 35 ................................. TCTACATCCGTCGGTAGCTTAATCGACAGTGCCGG 63978 33 90.9 0 C..............................NN | ========== ====== ====== ====== ================================= =================================== ================== 4 33 96.2 35 ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCAGGCGGCTGTGTGTTGAAACTGCAAAAGCAAAATTACAACCTAAGAGTATAACGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGGTTTGAACCCTGTGTAGGCAGGAGCTTTTGCCAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCGTAACAGATTTCAGGATCATCATGACGAGGAAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCACCCTGCTGGACAACTTGCCATACTCTACCGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCAGGCGGCTGTGTGTTGAAACTGCAAATAAACTATCCCAATGCCGACCCCGCCCGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAACCCCTACAAAACGCAGACAGCAGAAGCCGTAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCTAAAGCCTTTTATCTTGCTTGGATTGACTATGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAGCCCATCAAAAGTAAACGTGATGGATGTTGCGGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTAGAAATCGCCACACCCGCAATCGACCGCAATCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATAAAACGCCTTTGGGTGTCCGTATGCGCTATTTTCCAGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 64171-64735 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 64171 33 97.0 33 C................................ AACCCCTACAAAACGCAGACAGCAGAAGCCGTA 64237 33 97.0 33 A................................ TCTAAAGCCTTTTATCTTGCTTGGATTGACTAT 64303 33 100.0 35 ................................. AAGCCCATCAAAAGTAAACGTGATGGATGTTGCGG 64371 33 97.0 33 A................................ TTAGAAATCGCCACACCCGCAATCGACCGCAAT 64437 33 97.0 34 C................................ ATAAAACGCCTTTGGGTGTCCGTATGCGCTATTT 64504 33 97.0 34 T................................ GCCTGCGACACCGTGCAGGCGGCAAACTAAAGGA 64571 33 100.0 33 ................................. TTTGAAAATATAGCCGTCATACCAATGATCGCT 64637 33 100.0 33 ................................. CCCTGTGCGGTTGATGTAACCGTCGCCATGGAA 64703 33 90.9 0 T..............................NN | ========== ====== ====== ====== ================================= =================================== ================== 9 33 97.3 34 GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCAATATGCCGTCCGAAAAGCGGTTTGAATTGCGGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTGTAATTATGTCTCAAAAAATAACGAATCATTAAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCTACATCCGTCGGTAGCTTAATCGACAGTGCCGGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCAGGCGGCTGTGTGTTGAAACTGCAAATAAACTATCCCAATGCCGACCCCGCCCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGGCTTGTCGTCAGGTTTGGGGTCGTCTTTGCCGTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCGAAAGCCGACGGCCTTGAAGCAGGCTGGTTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTTTTGGAAAAATTTGGAAAAACCCATAGAGACAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCTTTTGTCGGGTTTGGGGTCGTCTGAAAAAGCTGCCAGCC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 64833-64997 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 64833 33 97.0 33 N................................ GGCTTGTCGTCAGGTTTGGGGTCGTCTTTGCCG 64899 33 100.0 33 ................................. AGCGAAAGCCGACGGCCTTGAAGCAGGCTGGTT 64965 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ================================= ================== 3 33 98.0 34 TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : AACAAGCCCATCAAAAGTAAACGTGATGGATGTTGCGGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTAGAAATCGCCACACCCGCAATCGACCGCAATCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATAAAACGCCTTTGGGTGTCCGTATGCGCTATTTTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCCTGCGACACCGTGCAGGCGGCAAACTAAAGGAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTTGAAAATATAGCCGTCATACCAATGATCGCTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCCCTGTGCGGTTGATGTAACCGTCGCCATGGAATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCTTTTGGAAAAATTTGGAAAAACCCATAGAGACAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCTTTTGTCGGGTTTGGGGTCGTCTGAAAAAGCTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTTGAAACCCCTTGACAAATATTTTTAACCGATATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCATAGTAAAATCTTCGTGGTTTATATATTCGACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 65161-65392 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 65161 33 93.9 34 NN............................... TCTTTTGTCGGGTTTGGGGTCGTCTGAAAAAGCT 65228 33 100.0 34 ................................. TTTGAAACCCCTTGACAAATATTTTTAACCGATA 65295 33 97.0 32 T................................ CATAGTAAAATCTTCGTGGTTTATATATTCGA 65360 33 93.9 0 C...............................N | ========== ====== ====== ====== ================================= ================================== ================== 4 33 96.2 34 GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGTTGAAACCCCTGTGCGGTTGATGTAACCGTCGCCATGGAATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGGCTTGTCGTCAGGTTTGGGGTCGTCTTTGCCGTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCGAAAGCCGACGGCCTTGAAGCAGGCTGGTTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTTTTGGAAAAATTTGGAAAAACCCATAGAGACAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGACAGCACCTTTATAATCTCCTGACCTTATTCTTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATCCGAATAGTAGATGTTGTCTTTAAATGCACGGGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCCTAATTTATTTTTCCGCCCACATTAGTCAGGGCTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATCGCCCGCCTTGAAGCCAAGAACAAACCCAAAACCAGCCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 65490-65655 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 65490 33 93.9 33 NN............................... GACAGCACCTTTATAATCTCCTGACCTTATTCT 65556 33 97.0 34 T................................ ATCCGAATAGTAGATGTTGTCTTTAAATGCACGG 65623 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 97.0 34 GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GTTGAAACCTTTTGGAAAAATTTGGAAAAACCCATAGAGACAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCTTTTGTCGGGTTTGGGGTCGTCTGAAAAAGCTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTTGAAACCCCTTGACAAATATTTTTAACCGATATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCATAGTAAAATCTTCGTGGTTTATATATTCGACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCCTAATTTATTTTTCCGCCCACATTAGTCAGGGCTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATCGCCCGCCTTGAAGCCAAGAACAAACCCAAAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCTACATCAAGGCAGCTTAACTCGAAGGCGATTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTCCTAGCAGACGATGGAATTGATGTTCTTTGGTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCC # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 9 65884-66049 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 65884 33 100.0 33 ................................. AGCTACATCAAGGCAGCTTAACTCGAAGGCGAT 65950 33 97.0 34 T................................ GTCCTAGCAGACGATGGAATTGATGTTCTTTGGT 66017 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ================================== ================== 3 33 98.0 34 ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGACAGCACCTTTATAATCTCCTGACCTTATTCTTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATCCGAATAGTAGATGTTGTCTTTAAATGCACGGGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCCTAATTTATTTTTCCGCCCACATTAGTCAGGGCTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATCGCCCGCCTTGAAGCCAAGAACAAACCCAAA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTATTGCCTAAGAACGTCTTTTCTAACTGGCATAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATGAAGGCGGTATGCCGCATCGAAAACGTGGAAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCATCCATAACCACCTCAGCATAGCTGGTCGGCTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTGTTGCGCTGGAACACATGAGCGAGCCTGAGACGCCAG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 66148-66380 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 66148 33 93.9 34 NN............................... GTATTGCCTAAGAACGTCTTTTCTAACTGGCATA 66215 33 100.0 33 ................................. ATGAAGGCGGTATGCCGCATCGAAAACGTGGAA 66281 33 97.0 34 G................................ TCATCCATAACCACCTCAGCATAGCTGGTCGGCT 66348 33 93.9 0 C...............................N | ========== ====== ====== ====== ================================= ================================== ================== 4 33 96.2 34 ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GTTGAAACCCTAATTTATTTTTCCGCCCACATTAGTCAGGGCTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATCGCCCGCCTTGAAGCCAAGAACAAACCCAAAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCTACATCAAGGCAGCTTAACTCGAAGGCGATTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTCCTAGCAGACGATGGAATTGATGTTCTTTGGTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTGTTGCGCTGGAACACATGAGCGAGCCTGAGACGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGATGGTCGCCGCCCGTCATATCCGCCCACTTATCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGATATTTAATAAGGCAGGATAAAAATGAACAAATGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATTGATACCCTGAGCTTCACATTCAAAGAAAAATCCCAGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 66478-66643 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 66478 33 93.9 33 NN............................... TGTTGCGCTGGAACACATGAGCGAGCCTGAGAC 66544 33 100.0 34 ................................. CGATGGTCGCCGCCCGTCATATCCGCCCACTTAT 66611 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= ================================== ================== 3 33 97.0 34 GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GAAACGTCCTAGCAGACGATGGAATTGATGTTCTTTGGTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTATTGCCTAAGAACGTCTTTTCTAACTGGCATAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATGAAGGCGGTATGCCGCATCGAAAACGTGGAAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCATCCATAACCACCTCAGCATAGCTGGTCGGCTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGATATTTAATAAGGCAGGATAAAAATGAACAAATGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATTGATACCCTGAGCTTCACATTCAAAGAAAAATCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTGTCTCAATGCCTGCTCACTCGGAAAGCCTGCGTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTACCGATGTTTTTAGTATCATTGATAGGCGCAGCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTCCGAATAGTAGATGTTGTCTTTAAATGCACGGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTGAGTATCCATGAATCCAGCTTATTATCAAAAAACC # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 12 66873-67240 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 66873 34 100.0 32 .................................. GTCTCAATGCCTGCTCACTCGGAAAGCCTGCG 66939 34 97.1 34 T................................. ACCGATGTTTTTAGTATCATTGATAGGCGCAGCA 67007 34 97.1 33 .................................G TCCGAATAGTAGATGTTGTCTTTAAATGCACGG 67074 34 100.0 33 .................................. GAGTATCCATGAATCCAGCTTATTATCAAAAAA 67141 34 100.0 32 .................................. CTAGCTGCGCCACTCCAGTCACCATTCTGAGC 67207 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================== ================== 6 34 99.0 33 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACT # Left flank : GTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTGTTGCGCTGGAACACATGAGCGAGCCTGAGACGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGATGGTCGCCGCCCGTCATATCCGCCCACTTATCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGATATTTAATAAGGCAGGATAAAAATGAACAAATGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATTGATACCCTGAGCTTCACATTCAAAGAAAAAT # Right flank : TGATGGATAAGAACGGTTACAGATTCGAGGTTGTCCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCTATAAGGAAGTCCAATGAATACGACAGAAAAGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGAACGCGTCCGCCGATACCGTTTCCACCGCTCCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCTATTGATGGAAGATTTCAGAAAGATTTAAATACTGCCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 13 67807-67972 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 67807 33 100.0 34 ................................. ACGGGTTAAAGAATCTATCTTGCAGTCCTCCCTC 67874 33 100.0 33 ................................. TGTGGTAAGCTACAGGTAGATAGCGGTAGGGAT 67940 33 90.9 0 ..............................NNN | ========== ====== ====== ====== ================================= ================================== ================== 3 33 97.0 34 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACC # Left flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCTATAAGGAAGTCCAATGAATACGACAGAAAAGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGAACGCGTCCGCCGATACCGTTTCCACCGCTCCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCTATTGATGGAAGATTTCAGAAAGATTTAAATACTGCCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACACTCGGCTGGTGTCGCCACGTGGAATGTTCTGCAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTGCTGAAGCGTGAGACACGCGGCGGGGAAGTACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCAGAATCAAGATGCCCCGTATGATATGGTCGTCTACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTGTTTGGGTATCTGAGCGGCAAGGATAACGCCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACACCAGCTCATCAACTATCCTGCTATCGTCCCACCCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 14 68069-68298 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 68069 32 96.9 33 N............................... TTGCTGAAGCGTGAGACACGCGGCGGGGAAGTA 68134 32 100.0 35 ................................ CAGAATCAAGATGCCCCGTATGATATGGTCGTCTA 68201 32 100.0 34 ................................ CTGTTTGGGTATCTGAGCGGCAAGGATAACGCCC 68267 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 99.2 34 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : AACTCTATTGATGGAAGATTTCAGAAAGATTTAAATACTGCCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACACTCGGCTGGTGTCGCCACGTGGAATGTTCTGCAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCACGGGTTAAAGAATCTATCTTGCAGTCCTCCCTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTGTGGTAAGCTACAGGTAGATAGCGGTAGGGATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CACCAGCTCATCAACTATCCTGCTATCGTCCCACCCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTGAACTGCTCAATCTTACTGGCCTCCTGCCAGCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTCATTAGGGCGGCTATGATTACTTTTTTGGGTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCGTACCATACAAACAACGTCCTAGACGGCATGAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTCTAAGGTTTTAGCGGCTTCGATTTGTTTCTCGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.01 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 15 68527-68758 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 68527 33 100.0 33 ................................. CTCATTAGGGCGGCTATGATTACTTTTTTGGGT 68593 33 100.0 34 ................................. TCGTACCATACAAACAACGTCCTAGACGGCATGA 68660 33 97.0 33 A................................ GTCTAAGGTTTTAGCGGCTTCGATTTGTTTCTC 68726 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ================================== ================== 4 33 98.5 34 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTGCTGAAGCGTGAGACACGCGGCGGGGAAGTACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCAGAATCAAGATGCCCCGTATGATATGGTCGTCTACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTGTTTGGGTATCTGAGCGGCAAGGATAACGCCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACACCAGCTCATCAACTATCCTGCTATCGTCCCACCCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTGAACTGCTCAATCTTACTGGCCTCCTGCCAGC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGCTCCGTCGGGGGCTTGGAAACACGGCTTTCATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCCGAGTCATCAATCTGGAACTTAATGGCCTGACCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTATCTCCAAATAAAAAGGTCGCCCTTTCAGACCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATCCTTAGTGCGAGCTTACGAAAAAGGCGGGCAAACCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 16 68923-69159 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 68923 33 97.0 35 T................................ TCCGAGTCATCAATCTGGAACTTAATGGCCTGACC 68991 33 100.0 34 ................................. TTATCTCCAAATAAAAAGGTCGCCCTTTCAGACC 69058 33 100.0 36 ................................. ATCCTTAGTGCGAGCTTACGAAAAAGGCGGGCAAAC 69127 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 97.7 35 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTGAACTGCTCAATCTTACTGGCCTCCTGCCAGCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTCATTAGGGCGGCTATGATTACTTTTTTGGGTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCGTACCATACAAACAACGTCCTAGACGGCATGAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTCTAAGGTTTTAGCGGCTTCGATTTGTTTCTCGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGCTCCGTCGGGGGCTTGGAAACACGGCTTTCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACGATATGTTGAAGCACAAAAGATTGTCAAACAGCCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACACCCCAACCATTTCGGACGGCCACCGTCCTTACCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTATTGAAGTCCTCGACAGCCTTTTCGACGTTCGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTATCTCGTTGAGCAAATGCTCGCAGACGAAGGATCCAGCC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 17 69321-69488 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================= ================== 69321 34 100.0 33 .................................. CCCCAACCATTTCGGACGGCCACCGTCCTTACC 69388 34 97.1 33 .................................T TATTGAAGTCCTCGACAGCCTTTTCGACGTTCG 69455 34 91.2 0 ...............................NNN | ========== ====== ====== ====== ================================== ================================= ================== 3 34 96.1 34 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGCTCCGTCGGGGGCTTGGAAACACGGCTTTCATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCCGAGTCATCAATCTGGAACTTAATGGCCTGACCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTATCTCCAAATAAAAAGGTCGCCCTTTCAGACCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATCCTTAGTGCGAGCTTACGAAAAAGGCGGGCAAACCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACGATATGTTGAAGCACAAAAGATTGTCAAACAGCC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTATCTCGTTGAGCAAATGCTCGCAGACGAAGGATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGTTAGGCACGGTCGGCGTGCTTACCGATGCACCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCCGTCGTGGTGGGCTGGATGATTTTTAAATAGGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGCCCATATCCAGTACATGCCGATATGCGTGGCGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCCACCCAACGGCTACGGCTGCAAATGCTCGGTGTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGACGCCCTGAAGGCAGAAGTCGATACGCTCAAGGCCC # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 18 69587-69951 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 69587 33 97.0 33 ................................T ATCTCGTTGAGCAAATGCTCGCAGACGAAGGAT 69653 33 100.0 34 ................................. GTTAGGCACGGTCGGCGTGCTTACCGATGCACCC 69720 33 100.0 33 ................................. CGTCGTGGTGGGCTGGATGATTTTTAAATAGGC 69786 33 100.0 33 ................................. GCCCATATCCAGTACATGCCGATATGCGTGGCG 69852 33 100.0 34 ................................. CACCCAACGGCTACGGCTGCAAATGCTCGGTGTC 69919 33 97.0 0 ................................G | ========== ====== ====== ====== ================================= ================================== ================== 6 33 99.0 34 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACC # Left flank : AAACATCCTTAGTGCGAGCTTACGAAAAAGGCGGGCAAACCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACGATATGTTGAAGCACAAAAGATTGTCAAACAGCCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACACCCCAACCATTTCGGACGGCCACCGTCCTTACCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTATTGAAGTCCTCGACAGCCTTTTCGACGTTCGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : GACGCCCTGAAGGCAGAAGTCGATACGCTCAAGGCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCAGCCACACCCGCGCTGTTATCTGCCAAAGCGATCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTGATAAAGGTAGTTGCATCAATAATAAAGCAACAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTGAAAACGGCGATGTTTTGCGCACGCACACTTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTTGCGGTCATACTCCACGCACATATGCATACGCATCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTGGAATCCAAAATCAGACACCCCATCCTCCTCCCAGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 19 70709-71397 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 70709 32 96.9 33 A............................... CCAAGCTGTGGCTTTGGTCGTGCTTTGGAAGTC 70774 32 96.9 34 G............................... TTTTGAAATAACCGATTTAAGTATGAGCCCCGAT 70840 32 96.9 34 T............................... ACGATTGTCGCGGATGACATGTTCAGGGTTTTGC 70906 32 96.9 33 A............................... TATATCTCCGTGGTTAAACTGTATTTCAAACCT 70971 32 96.9 34 G............................... TAGTAATTGATTTAAATTGAATGATGTTTTTATA 71037 32 96.9 34 A............................... AGTGATTGCGCCGCTACCGATGGCGGTTGATTGG 71103 32 93.8 35 T...............A............... TACTTCAAAATGCAAATTACCCTCTACATCAAGTA 71170 32 100.0 33 ................................ TGCTGTTGTGAAATGCGTCGCACTGACGCCAGA 71235 32 100.0 33 ................................ GATTACTATTTCAGACGACACATATCAAACCAT 71300 32 100.0 34 ................................ CTTGATTACATTGGTATTTTTTACATCAATGCAG 71366 32 96.9 0 T............................... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 97.5 34 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGAAACGTGATAAAGGTAGTTGCATCAATAATAAAGCAACAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTGAAAACGGCGATGTTTTGCGCACGCACACTTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTTGCGGTCATACTCCACGCACATATGCATACGCATCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTGGAATCCAAAATCAGACACCCCATCCTCCTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGGTAATTTTGGGGCATATGCCAAGAAGCCCGTCAACAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATCCACAACAACATCAGCAACAGTTTTAGAAAC # Right flank : CTACAACGAAGAAATAAGCCCTGATACCGCGTGGGCAGCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTGAATAAGTAAGGGTAATCTATGCGAAACGCTGTACAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCATCTTATCGTCAACACCCGCGAAGATATCCGTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTCGGCAGTATTCGGCTATCAGCCTCGCGTCCTGTCAGCCGCCTTCAGGTGGCTGTGTGTTGAAACATCCTTTGTCATATTTGTCATAACTTCACCTTTGCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGTACATACCCAGTTTGAACACTATACAAGGCTGC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 20 71567-72131 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821496.1 Neisseria sp. HMSC065D04 Scaffold381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 71567 32 93.8 35 NN.............................. GTGAATAAGTAAGGGTAATCTATGCGAAACGCTGT 71634 32 96.9 33 A............................... CATCTTATCGTCAACACCCGCGAAGATATCCGT 71699 32 100.0 34 ................................ TTCGGCAGTATTCGGCTATCAGCCTCGCGTCCTG 71765 32 93.8 33 T..............T................ ATCCTTTGTCATATTTGTCATAACTTCACCTTT 71830 32 96.9 36 G............................... CGTACATACCCAGTTTGAACACTATACAAGGCTGCG 71898 32 93.8 34 A..........T.................... CACCTTTTCCACCACGCCGCAGAGGGCGCACCGG 71964 32 93.8 34 ...........T.........G.......... ATCGGCTCAGTCGCAGAACCGCGCATATCTGGAT 72030 32 93.8 35 T...........G................... GGGCGGTAAAGTGAAGTCATGCCGCCGTCTGTTTG 72097 32 84.4 0 ................A...A.A.A.A..... | C,T,C [72122,72125,72127] ========== ====== ====== ====== ================================ ==================================== ================== 9 32 94.1 34 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : ACAGTGATTGCGCCGCTACCGATGGCGGTTGATTGGTCAGCCGCCTTCAGGCAGCTGTGTGTTGAAACTACTTCAAAATGCAAATTACCCTCTACATCAAGTACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTGCTGTTGTGAAATGCGTCGCACTGACGCCAGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGATTACTATTTCAGACGACACATATCAAACCATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTTGATTACATTGGTATTTTTTACATCAATGCAGTCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTACAACGAAGAAATAAGCCCTGATACCGCGTGGGCAGCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTCAGAGATTTCTTACAACAAAGGTCGTCTGAAAACCTTATCAATCGGTTTTCAGACGACCTTTTTCAGCCATCAACATAAGCCCGATACTTTGGAATAGGCTATGGGCATCAGACAGATAGGTCAGCCGATTCGGGCATCAGAATTTCACACCTTTATGCAAGGCTACGATGCCTGCGCTCATATTATGATAATCAACGCTGTCGAAACCAGCATCCAGCATCATTTGTTTCAATGTTTCCTGATCGGGGTGCATGCGGATGGATTCTGCCAGATATTGATAGCTGTCTGCGTCTTTGGCAATGAGTTTGCCCATGACCGGCAGCAGTTTGAAGGAATACAAATCGTATGCGCCTTCCAGTGGTTTGTAGACTTTGGAAAATTCCAACACCAAGAGCGTTCCGCCCGGTTTGAGCACACGGTACATTTCTTTGAGCGCAGCATCTTTGTGGGTCATGTTGCGCAAACCGAAAGCAACGGAAACCAGATTGAAATAGTTG # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //