Array 1 16698-12106 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNCW01000003.1 Acinetobacter baumannii strain MRSN5540 MRSN5540_contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 16697 30 96.7 30 ............................A. TTCCGCAACTCGCTACTTCCCTGATGCAGA 16637 30 96.7 30 .............................G GAAGATTTGCTTATGGCGTTCTGGAAAGAA 16577 30 96.7 30 ............................A. TGCTTAGTAATGCGCAAAAACGGTCATCCA 16517 30 93.3 30 ............................AG CAGAAGAACGCAGAAAAGCGAGAAGCTTAA 16457 30 96.7 30 ............................A. CTTGAAAGGCTTGAGCTTAAAGCTTTTTAC 16397 30 96.7 30 .............................A CAGCTGGCCGCGTATATAACGGCTCAGTAT 16337 30 93.3 30 ............................AC AACTCGATGTTGGGTATGCAGAGAGCCTTG 16277 30 93.3 30 ............................AA ACTTACACTTCTCAGCGTCAAACCATGCGT 16217 30 93.3 30 ............................GA TTACATCCACGAAAAGAGCTTTAATCAGGA 16157 30 96.7 30 .............................G GCAGAACTTTTCATGACGCTCATTCTCTAA 16097 30 96.7 30 ............................A. ACCTATCAACGTTAAACCAACGATTGCCAG 16037 30 93.3 30 ............................GA TGCAGAAGATGTTTTAGAACGTTATGACGA 15977 30 96.7 30 ............................A. TGGGATGTTATGAATATTCGACATTACCAA 15917 30 96.7 30 ............................A. CAAAATAGAGTTGGCCTTCCTGTTTGGCCT 15857 30 100.0 30 .............................. CAAACGCTTCAACCAGCCACGTCTTTGAAG 15797 30 96.7 30 .............................C TTCCGCCAAATTCTAGGAGGTTAACATGCT 15737 30 100.0 30 .............................. GTGCATACTTATTGCCGCCAGCAAGTAAAC 15677 30 96.7 30 .............................C CTTCGGGAGGTTTTCTTTTGGGGTGATCAT 15617 30 93.3 30 ............................AA GTTTCGGCCTAATGGATGCGGTCTTGAAAA 15557 30 93.3 30 ............................AA GGACTATCCGTCCCTTTGCCGTTTTTGTAC 15497 30 93.3 30 ............................AC CCTCGGGTGGTTTTTTATTGAGGTGATCAT 15437 30 93.3 30 ............................AG TGGCGCGTTCAAGCGTGCCATTGAAGCATA 15377 30 93.3 30 ............................CA GAAGTAAGTCTTGCAGATGCACGATCTAAA 15317 30 96.7 30 ............................A. CCGCCGATAAAACCCTTACCCGATACGCCC 15257 30 96.7 30 .............................C AGCTCCCGATTCAACATCCAACAACATGCT 15197 30 100.0 30 .............................. TGAAAGACTTGAACGTGGTCAAGTCCTCCT 15137 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 15077 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 15017 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 14957 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 14897 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 14837 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 14777 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 14717 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 14657 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 14597 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 14537 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 14477 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 14417 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 14357 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 14297 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 14237 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 14177 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 14117 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 14057 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 13997 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 13937 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 13877 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 13817 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 13757 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 13697 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 13637 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 13577 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 13517 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 13457 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 13397 30 100.0 30 .............................. CTCATCGTGAAGGTTTTGCAAATATGCCTT 13337 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 13277 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 13217 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 13156 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 13096 30 100.0 30 .............................. CAACTGTGTAACCAGATTTCGCTTTAAAAG 13036 30 96.7 30 ............................A. CAATGTAATGCTCAGGCGATGCCTTATCAT 12976 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 12916 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 12856 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 12796 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 12736 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 12676 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 12615 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 12555 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 12495 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 12435 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 12375 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 12315 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 12255 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 12195 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 12135 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 77 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //