Array 1 27627-26803 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBT01000002.1 Salmonella enterica strain BCW_6089 NODE_2_length_467451_cov_2.82508, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27626 29 100.0 32 ............................. ACGAGTCGCAGGAGGGCGAAACCATATTATCC 27565 29 100.0 32 ............................. ACCCATATCAACGCACCGAAATTACGGACGGC 27504 29 100.0 32 ............................. ACGACTGAATTAAAACCATACGGCGGCTCATA 27443 29 100.0 32 ............................. ACGGGGAGTCAGTCACATCCATTGAGGATGCG 27382 29 100.0 32 ............................. CCTCCAGGATACCCCCACCGATGAAGGTGGGG 27321 29 100.0 32 ............................. CAGTATTTCGGTATGGCTAGCCACAGCGCGAA 27260 29 100.0 32 ............................. AAATCATTCATCATCGCGATAGCGATCGAATC 27199 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 27138 29 100.0 32 ............................. AATGCTTTGGCAAAATCAATTCCCCCAATTGA 27077 29 100.0 32 ............................. TCCGGGCGTACAGATATCATGAGTTCTGACGA 27016 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 26955 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 26893 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 26832 29 96.6 0 A............................ | A [26805] ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGTATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45499-43885 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBT01000002.1 Salmonella enterica strain BCW_6089 NODE_2_length_467451_cov_2.82508, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45498 29 96.6 32 ............................A TTACCGTATGACAAGCGGGTAAAAAAAAGCCC 45437 29 100.0 32 ............................. AAAACATGCATATGGGCTGGTAACGGCTTTGT 45376 29 100.0 32 ............................. TCGTGACCATGAATAATGACGTCATCACCGCG 45315 29 100.0 32 ............................. TGCACATTATTTCAGGGCGAAATCTCGTCCGC 45254 29 100.0 32 ............................. ATGCTGGCGCATCATGTAAAATCGCGTGCCAA 45193 29 100.0 32 ............................. TCGGTTATTGAGGACGTCACCGACGACGCACT 45132 29 100.0 32 ............................. ACATTGAACCTCCTCAATAGGGCAGGTCGTTC 45071 29 100.0 32 ............................. GAACGACGACCAGATTAACGCCGGTCTGGAAA 45010 29 100.0 32 ............................. GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 44949 29 100.0 32 ............................. GCGCGGCATAACAGCACGGGCACGCCGCCAGG 44888 29 96.6 32 .................A........... ATAAATTATCGGGAAATCATAATCAGCGCCGC 44827 29 100.0 32 ............................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 44766 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 44705 29 96.6 32 .............T............... GCGCAGTATCAGGGAACGGCCGTTATTACGGT 44644 29 100.0 32 ............................. GCAATGGCAAGTAGTTCTCAGATGAAAGTCAG 44583 29 100.0 32 ............................. CCAACGGACGAGATCCTGGACTGCGACGGGCT 44522 29 100.0 32 ............................. GAAAGATTCACATTTAAAACTAGTGATTTTTC 44461 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 44400 29 100.0 32 ............................. TCTGGTGATTTGAAAGACTGGCACGCAGAGGA 44339 29 100.0 32 ............................. AAGATACAAAAAAGTACACGTAAAGTGCACGT 44278 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 44217 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 44156 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 44095 29 100.0 32 ............................. TGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 44034 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 43973 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 43912 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCTAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //