Array 1 261056-260848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSO01000059.1 Pectobacterium brasiliense strain CFIA1033 scaffold62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 261055 28 100.0 32 ............................ AGTAACGCAACGTTAGCGCGGAATTATCCCGT 260995 28 100.0 32 ............................ ATGTTCAATCTGGCGGGAAAAACGATTTGTGT 260935 28 100.0 32 ............................ AGTTGCTGAAACACATCGTACAGTTCGCTGAT 260875 28 71.4 0 ...........C.C.......CCGTT.C | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGCTAGATCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGTTGCGCCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAGAGCCTGTCCAACGGGCAAATGTTCTTCGTATTTATAGAACATGGTCCGCTACAGGACGTTCCCGTCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTTCCCTGGTTCTGACCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAAATGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCGATAAAATGAGTATTCTATTTAATAATCTGGTAGTTAGCGTAAAAACTTAACG # Right flank : TTATCGAGATGCGTCGCTGGCGCGACGCATTCTTGAGGACTATTCCCCGTTGAGGGTAACCACCAGAGAGCGGCCGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTTAGACTGTTTCCGAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATAGGTATGGCGGTAATACGGTTCATCTTCCGGCACCAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGATCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGAAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCACGTGCCAAAATCGGTC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 269630-269896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSO01000059.1 Pectobacterium brasiliense strain CFIA1033 scaffold62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 269630 28 100.0 32 ............................ AGTTGAAATTATTTTATCGATTATAGCATGAA 269690 28 100.0 32 ............................ GAGGGCGGCACAGTTGCAGGTATGACACTCGA 269750 28 96.4 32 ...........T................ CAGATTATGACGATATATGCTGGCAGTTGGAT 269810 28 96.4 32 ...........G................ ATTTCGATCCCCGTTGAAGCGCCGCCGCCACC 269870 27 75.0 0 ....-......T.C......T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 5 28 93.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACTATTTGATAAAGAAAAATATAATCGTCAAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : ACGCCTTAAGTGTCATTATCTGGCTATTATCGAGGTAACACTATCGTCAGTGTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTATGGGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTTCCTGTACCGATCCCAT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 277703-276714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSO01000059.1 Pectobacterium brasiliense strain CFIA1033 scaffold62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 277702 28 100.0 32 ............................ GCACATGCCACTCGATCGCAGCACCCATTCGC 277642 28 100.0 32 ............................ TAACGGAAGTTCTCGCTCTCCGGGTCGCGATG 277582 28 100.0 32 ............................ GCGCCTCCCCTGCCTGTAGTGCCGGATGCTGT 277522 28 100.0 32 ............................ AGTCTGAGTATGCGGCAGTATATGCCAATTGC 277462 28 100.0 32 ............................ ATCGCGTCGAATTGGTGTTGAGTGGTTTCGGT 277402 28 100.0 32 ............................ AGTCAACTCCGTCTGCGCAATTTGCCTAGCTC 277342 28 100.0 32 ............................ AACAGCACGTTATTGCCGACATTGTGAACATG 277282 28 100.0 32 ............................ CGCATAGCAGAACCTAGCGGGTCAGATAAGCT 277222 28 100.0 32 ............................ CAGACGCTAAACATGACAATCCCTCAGGGGTT 277162 28 100.0 32 ............................ ATATTCCAGATATAGTAAATATCATTGCAGAT 277102 28 100.0 32 ............................ AGCGAGTTATGCTTAACTCCGATGGTTTCTGC 277042 28 100.0 32 ............................ AGCGTGTACAGCCGACGCCGCAGCAAGCCTAT 276982 28 100.0 32 ............................ GATATGGTGCGGTTATTTACTGCGATCCGCCA 276922 28 100.0 32 ............................ CTATGTTTCCCGCAGCACGCTGGGCGAATGGA 276862 28 100.0 33 ............................ ACAGGAACGCGCGGCTATCAGCATTGGTCAGAA 276801 28 96.4 32 .............C.............. TGAGAAATCAACATTCCGTCGTCATCGTTGCA 276741 28 85.7 0 ...........AGC........A..... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACTTGGCATAGGTCTGTCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATAAAGCTCTCCTAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAGCAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTGGCTGTGGCAGATCTGCCTGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //