Array 1 1848752-1850429 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJG01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL00477 2015LSAL00477_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1848752 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1848813 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1848874 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1848935 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1848996 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1849057 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1849118 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1849179 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1849240 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1849301 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1849362 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1849423 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1849484 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1849546 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1849607 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1849668 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1849729 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1849790 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1849852 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1849913 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1849974 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1850036 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1850097 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1850158 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1850219 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1850280 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1850341 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1850402 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1866688-1868669 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJG01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL00477 2015LSAL00477_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1866688 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1866749 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1866810 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1866871 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1866932 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1866993 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1867054 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1867115 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1867176 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1867237 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1867298 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1867359 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1867420 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1867481 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1867542 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1867603 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1867664 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1867725 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1867786 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1867847 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1867908 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1867969 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1868030 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1868091 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1868152 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1868213 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1868274 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1868335 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1868396 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1868457 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1868518 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1868579 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1868640 29 96.6 0 A............................ | A [1868666] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //