Array 1 1297-470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOLK010000032.1 Phocaeicola vulgatus strain MSK.16.10 NODE_32_length_58159_cov_119.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1296 33 97.0 34 ................................C TGTGGGATGATTTGAATATTCCGGCGCCCCGGCG 1229 33 97.0 34 ................................T TTGCGTTTGCCAATGGTATATACCATGAGCAGGA 1162 33 100.0 34 ................................. TTATAGGGATTATAGATTGGTGGACGTCAGATTT 1095 33 97.0 32 ................................C CTTTATCAATGTCACGGCAATAACCGGCAATA 1030 33 100.0 32 ................................. GTATCTCCCTACAGTACGGACTTGGAGGGATG 965 33 100.0 32 ................................. CGATCTACTTTGTTAGCATTTTTAACTTCTTC 900 33 97.0 32 ................................T CATAACTATAATATTGATGTTACATCGTCTAT 835 33 97.0 33 ................................C AAATCATAGGCATTGCTTAATGTCCAAAGTATA 769 33 100.0 33 ................................. GATTTTGTCAGTGTAAAGTAAGCGGTAATGGCA 703 33 97.0 33 ................................T TGTATCAATTGGTCCCCTACATATTTCCGCAAA 637 33 97.0 35 ................................T TGGTTTGTAGGCATGGGAAATAATTTGTTTTTTAA 569 33 100.0 32 ................................. TCGAATAGCGTCCAAACGGGGTGGCCGATTTC 504 33 93.9 0 ....................A.........G.. | TA [481] ========== ====== ====== ====== ================================= =================================== ================== 13 33 97.9 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAAAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGG # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAGTCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTCCAAAGCAAATATATTATATTTTTACTATACTATCCCTTGTTGTTTATTTGTTATATTGTTGGTTATTAATGTGCTATTATCTGCTTGTATCGATTGTTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGAAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //