Array 1 15127-14239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYHU01000003.1 Clostridium aceticum strain DSM 1496 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 15126 30 100.0 36 .............................. TTTATGTAACGTGTTTTCATTACTATAGATGTTGAG 15060 30 100.0 37 .............................. AGTAGTTTATTACCTAGTTCAGCAGCTCTTTCTCCTG 14993 30 100.0 37 .............................. TCTTGAAAAGGATTATTTTAAAAAGGAATTTTAAAAA 14926 30 100.0 35 .............................. ACTCAATTGTTCTTTCTGCTCTATCTCTTTCTTCC 14861 30 100.0 35 .............................. TCCATTGCCCACTTTCTAGCGTTCACCGCCCACTG 14796 30 100.0 35 .............................. GCCGCATCGGTCATTTACTTTCTATTTCTACATAC 14731 30 100.0 36 .............................. ACGAATTGTCCTAAGATAACAGGCTCACCTTTAACG 14665 30 96.7 37 ..............C............... ATTTTAGTTCATATGCTACTCCCGCAGAAAGTTATTG 14598 30 100.0 35 .............................. CATCAAAAATCCTTTTCTTAAAGCCATTTTTATTG 14533 30 100.0 37 .............................. TTATTCTGTCAATTGGAATATCTTCTTTCTTTTTCTG 14466 30 100.0 37 .............................. ACCACTCAAATAAATACTCATCGGATTTTGCATAGAC 14399 30 96.7 34 ......................G....... TGTTCTATATGTTCTAGTGGACTTGAGTTGCTTA 14335 30 96.7 37 ............T................. TGCTTTTAATCCTGCCAATGTTAGTCATCCTACTATT 14268 30 90.0 0 .....................A......TA | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 98.6 36 ATTTAGAAAATACCTATAAGGGATTGAAAC # Left flank : GTGGTAAAAAATGTTTGTGATATTAGTCTATGATATAAACATAAAACGTGTTGGAAAAGTACTGAAAACATCCAGAAAATATTTAAATTGGGTACAAAACTCTGTACTAGAAGGAGATATTACAGAAGCAAACTTTGTCAAACTCAAGCATGAGCTGTTAAGTAAAATAAATAAAGAGGAGGATTCCATACTTTTTTATATATTTAGGTCTAAAACCTATTCTAAAAGAGAAGAATATGGACTTAAGAAAGGAGGGGAAGATATTTTTTTGTAAATTTAAAAGTCTGATTTAGACATAAATTTTGAGAGATACATGAAAAATTGTCGTCAACCTCTAATCGGGTAAAAAACTCGGGAGAACGACGACAATTTTATTTTTGTAAAAGATATTGATATTTAAATAGGTTAGGATCAAACACCTATAAAAAATAAGAAGTTGAGTAATTAAGTTAAATTTTGACAATTTTTAGCAAACATGATAAAATCAATATGTTTAATGG # Right flank : GAACATCAAAAAGTAATATGATACAATAGAAAAGTGCAAGATATAGTTGATATAATTATTATAACAAGACGCTTCAAGAGGTGAAGGCAAATGAATGAAAAAAGCTTAAGAGTACTAGAATATACAAAAATCATTGAAAAATTGATTGAGGGGTGTGCTTCTTCTTTAGGTAAGGATTTAGCCAAGAACTTAAAACCCTTTAATCAACTTGAAAAAGTACAACAGCTACAGAAGGAGACCAGTGAAGCACAAAGTATTTTGATAAAAAGAGGCAATGTTCCGCTAGGGGGGATACATGATATTCTACACCTTGTTCGTAGAACAGAGATTGGCTCTTACCTGGATCCAGGACAACTTTTATATTTAAGAGATACATTAGCTGTTGCCCGAAAACTAAAACAATTTTTAAAAGAAGATGATAGACAAGAGGCAGAGTACCCTATTATCAGGGGTTTAATACAGAGCCTGAATACTGTCAAGGAAATAGAAGAGAAGATCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAGAAAATACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 91693-96966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYHU01000012.1 Clostridium aceticum strain DSM 1496 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 91693 30 100.0 37 .............................. CATCCTTAAGTTTTACCTTATGCTCTTCAGTGGTGTG 91760 30 100.0 36 .............................. ATGGTAGAGGTAATTCTAGAAACTATAGAATAATAC 91826 30 100.0 38 .............................. TTATTAACATAATCATTCACTGCATTTACGATCGTATG 91894 30 100.0 37 .............................. ATAAGTAAGGACTTAATTATCCAGGACAACATGAACG 91961 30 100.0 36 .............................. CTTGTAACGAGAACAGCATATAAAGGTGGATTATCC 92027 30 100.0 37 .............................. CCTACTAGATTAGCTAGGTATTGTTGCGAAAAATTAA 92094 30 100.0 37 .............................. GCTATTATACCTGCTATAACACCTATAGCTTTAATTA 92161 30 100.0 36 .............................. GAATATAGCAGAGTATTTTTTAGTATCATTAGATTA 92227 30 100.0 36 .............................. AAATCTATATTCCCCCATGCTTGAGCTATGGCTTCA 92293 30 100.0 36 .............................. TTGTTCAATAGATGTGTTGCAAAAGTATGGCGTATC 92359 30 100.0 37 .............................. AACTATAACAGGACTCATGACTGGGGACTGGGACATG 92426 30 100.0 36 .............................. CCTTTCGACCGTTATACGCTAATACAGGACGTTTAC 92492 30 100.0 36 .............................. TTTAACATCCCTCCTAACTTAACGCTTCTACTAAAG 92558 30 100.0 35 .............................. CTTTTTAATTCCTGAGAGAATGCCGGCATAGGTGG 92623 30 100.0 36 .............................. AGATAAAGAAAAAGCATGGAAAATTTTTGAATATTT 92689 30 100.0 36 .............................. AGGTTAAAAGCTTGCCCAAACCGGGGTAAAAAATAT 92755 30 100.0 37 .............................. GTAGGGAATATACATGTAAAAGCAAAAGATAATGATG 92822 30 100.0 36 .............................. GCAGGAGGCTCTACAGCTGCCGCAGGGACTACAGTA 92888 30 100.0 37 .............................. ATAAAAAGCGGGTTAATACTGCCGTAGTAGTTTTACC 92955 30 100.0 35 .............................. TCTGCTCTCCACAGTCCATGCATGTGTAATGCTGA 93020 30 100.0 37 .............................. ATACATCAAAGGTGTAATCATATGGCCTGTAGATGCA 93087 30 100.0 38 .............................. ACTAGAATTGTTAGATATTGTTGTTCCGAATTAAAAGA 93155 30 100.0 35 .............................. CCGCTAAAGGCTAAATAATAACCTTCTGGTGGTTC 93220 30 100.0 37 .............................. AAAGGAAAGTTTAAACTCTCCTACGGGCATTTCAATG 93287 30 100.0 39 .............................. AGGTTCTTTTCTAACTCTCTTTTTTAGGACTTCTGTACA 93356 30 100.0 36 .............................. GCGTTAATGGGTTTGTTGTTGCAAGTTAGAAAAGAA 93422 30 100.0 35 .............................. AATTTTTACTAGAAAACCAATTAATTCTTGTTCAA 93487 30 100.0 35 .............................. TTGCGTATTATCATCGGCAAGCCATATTTGTTGTG 93552 30 100.0 36 .............................. GGAATAACAGGCCTGGGGGATGGTAAGGCACCCTGT 93618 30 100.0 36 .............................. CAGTATCGACCAAATGGGCGCAGCTGCTAACGCCCT 93684 30 100.0 36 .............................. CTTGGCACTGTAAAACTTTGTGCTTCTCCTGTGTAG 93750 30 100.0 37 .............................. GTAGATGAAATTGATTTTGAAAGAAGTAAACTCCTTG 93817 30 100.0 37 .............................. TGTGGTAGAGCGGATATATGAAGTATTGCCTTGGATA 93884 30 100.0 36 .............................. TTCTCTGATCCTAGACTTTGATATTTCTATTTTGGC 93950 30 100.0 36 .............................. GCGTCACTATTGGAGTTTCTTCTTTAGGTTTTTCTG 94016 30 100.0 37 .............................. TAATTTCGGCTCGCATTAAAGCCATTTTTGTTTTAGC 94083 30 100.0 36 .............................. AGAGAAGAAATATGTAGGAGTAAAAATTGAGATGTA 94149 30 100.0 36 .............................. TTGGCTGTTTGGTTGGAAAAAGATATATGGGATTAT 94215 30 100.0 36 .............................. TAAAATCACCCCTTCGCATAATTAAAAAACTATGTA 94281 30 100.0 37 .............................. GAAAATGAACACAAGCTAGCCTATGATGAATTGTTAA 94348 30 100.0 37 .............................. GCTGCAGCGGTAACAACACTAAAATTTACTCTTTCAA 94415 30 100.0 36 .............................. TTCTTTTTTCTACGTCTTTTTCATCTTTTTTGGTTA 94481 30 100.0 37 .............................. GTGTAATTTGCAGATCTACTTTCTGCTAAATGAAATC 94548 30 100.0 36 .............................. AAGATTTACCTTATGAGTTTCGCGCCTACGGTTACC 94614 30 100.0 37 .............................. GGTGTAAAATCTAAAACACAATCATTATTAGCAATAA 94681 30 100.0 36 .............................. CAGGCTTTTGCAATTGCTAAAAATGCAGAAACTGTA 94747 30 100.0 37 .............................. TTCTTTACGAACTCTTTTTTTTAGTATTTGAGTACAT 94814 30 100.0 36 .............................. ACAGTTAGAGCAGTAGCACCACAGGCTTTAGCAATA 94880 30 100.0 36 .............................. AGTACAAGTAAGTTCGGTATTTCATCCGGTATTCTA 94946 30 100.0 36 .............................. TGTTTTATCTAGTTCCTGGTAATGGCTGCGCTTTTC 95012 30 100.0 36 .............................. GCAGATACTAGCCGAACAGCTGCGCCAGGGAAGTAT 95078 30 100.0 36 .............................. TTTTTTTAATAGCGTTTTGTACTTCCCCAGCTTCAC 95144 30 100.0 37 .............................. GGCCATAGGGGTACAGCCCCGGGACGATCTACACAAA 95211 30 100.0 36 .............................. GCGTATAAGGGAAGTAGCTGGCGAAGGCCTCTACAA 95277 30 100.0 37 .............................. AAAGATTGTTAAGCAAAGCTTTGATATCAGAAAGTTA 95344 30 100.0 36 .............................. TAAAAATAACACCTGTTTCAAGGTGCTTGTTGCACA 95410 30 100.0 37 .............................. TGAAGTATGGGACATGGCTAATGCTGAACTTGATCAT 95477 30 100.0 37 .............................. ACCATCACGTGGACTAGTCCAGAGCAAATATCTTTTC 95544 30 100.0 37 .............................. GAGTTTATGGAACTTCAGCGAATGAAAAAGTTAGATA 95611 30 100.0 37 .............................. TAGGCAAACATAAGGGGATTGTGTCAGGGAAAGATTG 95678 30 100.0 36 .............................. ACTAATGACCTTAATAAACTCCATTGCCGGTGAAGA 95744 30 100.0 36 .............................. GATTCTACAGGTTGACCTTCATAATCACCAGAATGT 95810 30 100.0 36 .............................. GTAGTCCAGGGGGGACCAGGCAAGTATTAGCGAAGG 95876 30 100.0 37 .............................. GTTTGGAGGGCAATATTCACCCCTCTCATAGCTTGCT 95943 30 100.0 37 .............................. ATTTGTATTTCGTAAGGCGCGGCCTGGTTAAAGTTCC 96010 30 100.0 36 .............................. TAACTTTCCCATTGGCTGTTGTAGCGTCAGGGTAGG 96076 30 100.0 36 .............................. AGAAATAAAAACGCTAATAGAGAGCAGCAAGTAGCA 96142 30 100.0 37 .............................. GTTGACATTGATCAATTAACGACCACAGGAAGGACTA 96209 30 100.0 36 .............................. TCATTAAGATTAGTGCGTACTTTAAAAGCGAACAAT 96275 30 96.7 35 ...............T.............. TGAGTTGTATAGTTACTAGCTACATTAGTTGCAGG 96340 30 100.0 35 .............................. AATAATCCCAAGATATACGTTTTACAGATGTATTG 96405 30 100.0 37 .............................. AACTATATAACCAAAAGCTACCGACTTTTCCAACCAT 96472 30 100.0 35 .............................. ATTAAGACGGAGAAGAGAATAAGAAAAGCTTTAAC 96537 30 100.0 37 .............................. ATTTTTAAAGAATTCTATCATCTTTGTTACCTCTCTT 96604 30 100.0 37 .............................. ATCATTTGAAATAACATCATAAACATCTGACCTTTTA 96671 30 100.0 36 .............................. TGCTAGATCTCTGATTTCATCCTGCGCCCTGCTACA 96737 30 100.0 36 .............................. TTGAAACCAATGGGATCATTGAACAAGGATTACTGG 96803 30 100.0 37 .............................. TCGGTAGTAAAACTACTTCGGTAGCTAGGAGGCGTTA 96870 30 100.0 37 .............................. CTAATTGAAATTGATGAAAGAGAAAAAGAAATTGATT 96937 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 80 30 100.0 36 CCTTTAATAGAACTACAGTAGAATGTAAAT # Left flank : AAAGGTATAATGGATTTAAAATTTGGTGGTGATGGTATGTACGTAGTTTTAATGTATGATATAATGATGGATAAAGATGGTGCTAAAGTGCAGAGAAATACCTTTAAAATATGTAAGCGATATTTAACTCATATACAAAAATCTGTATTTGAGGGAAATTTAACAGAATTAAATTTAATGAAGTTAAAAAAAGAACTAGGTCAGTATATACGGGATCATAAAGATTCTCTTGTAATATTTGAGAGTAGGGATGAAAAATGGTTAACTAAGGAGTTTTTAGGATTAAAAGATGATAAGACATCTAATTTTTTTTAAATGATAATCTGTCGACCTGTAGTAATGTATAAATAGATGGATATCGACAAAGTTTACTACGCCCTATACGGAAAGGATTTTTTAGAGAAAAAGCATGTTTTATATGATTCAGAGGGACTTTTAAATCATATATAGACAGAAAGTAAGACTACAAACTAGTAGTACAAGTGCTTTGAAATGAACGC # Right flank : TTTAAAAATTAAATAACAGTAGTAAAAAATCAAGAGACTTCCTGAGTAAGCTGGTGAAATTATGCTTTTTAGAGTTGGGGGATATGAAATTATAAAACAATGACTAATATAAAATGATATAATGAACCTATAAATGAAAGCAGGATGAATAAGACATCACGACAAAGACAATGAAAATGAATCTGAAGATCAAGAGGAGTAAGGATATATGAACAAAACTGCTATTAGAAACTTTGCTGTTAGGGCAAGGAAGAAGTTGATTGAGAATATCATCCAAAAAGCTTATGAGCTAGGGATTGCTGAGAATGGAATCAAGGGTATTGAGGCCTTTGAAGGTGGTTTTAGAATCAAGGGTCTAGAAAATAGTAAAGTTTATAAAAAATATGAAGAAAAACAAAGGGAAAAATTAATAGCTAAGATCAAGGAAAAAGGATTCCAACAGGTTATGGAGGAGGTAGCTTATACATGGTTTAATCGTTTTATTGCTCTTCGTTTTATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTAATAGAACTACAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //