Array 1 1524-1797 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNKR01000041.1 Mitsuokella jalaludinii DSM 13811 T518DRAFT_scaffold00041.41_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1524 29 100.0 32 ............................. TTCGGTTTCCGCACGTCTGCCTCGGATGCCTT 1585 29 100.0 32 ............................. CGCCTGGCCGCGCCGGACAAGCTCGGCAGCAT 1646 29 100.0 32 ............................. AGCAGGGAAAATTGGCTTGATGTACAGGCCAG 1707 29 100.0 32 ............................. CACGTCCGCAGCCAGTCGGCTGTTGTGATCGT C [1716] 1769 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGAGCCCCGCATGCGCGGGGATGATCCC # Left flank : CAAATGTCAACGAGAATCCGCTCGTCCAGGGTGAATCCAATTCGCCATTTAAACTCAAGCCGGGTGAGCGCCTTGCGCCAGTGTCAGACCGTGAAGGCCGACTGCCTACGGCTACGCTCGGCCCGAAGAAGCCAGAAGGCCATTTCGAGGGCGACCGTGTCACACGCGCGGAAATCTTCGAGAGCGCGCGGGAACTCTTCGGCACGATCCGCACGGGGCGCACGGGCAGAAGGCTCAACGGCCAGTACGACCGCTATGCAGATGTGGCCCGCACGGCGCAGTATGGCCAGTTCGATACGATGTGGCACGAGATCGGCCACAAGATTGACCTGCTGCTCGGCCTCACGGACAAGGCTGGCCATACGTATGATGCAGAATTCAAGCATGTGCTGGACCGCAAGTATCCAGACGGCTTCCTCAACCATTACCGTCTCGATGAGCTTCAGCCTGAAGGCATCGCGGAATTCCTCAAGGAATACATGCATGACCGCGCGGAGGCA # Right flank : CGCGCCCTCTCTGATATCAAGCAGGAGGTGGCAAGTGCTTTCCCGAATGCGAAGAACGTCCGCGATAATGGCCACGAGGTACTTTTCTCTATGCCAAATGGTGCAGAAGTATCGGTCAGTATTGTACCGTCCATCGAAGTGACGGAAAGTGAAGAAAGAAACGCTCGCGATGCACACGGCCTTGCGCCAGAGGTGCATGTCAAGATCAACGGCAAGGAACGCACGGTAGGCAGTAAGGCTATCATCGAGTTGTCTCAGCTCGGCAGGAAGGGCACGACCTACCACGAGGCTTTTCATGCCGTCTACGACATGTGCCTGGCAGATAAAGAAAAGGCCGCACTACACAAAGCCTACGACAAAGAGGCGAAGGAGCGCGACGTGTACGAGGTCATGGCTGACAAGTACCGTGACTGGATGATTGCGAAGCAGAAAGGCCAGCATACGCTGTACGGCAAGCTCTGGCAGAAGGTCAAGGACGCGGCGGCTAAACTTGTGCGCGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCATGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3583-3733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNKR01000041.1 Mitsuokella jalaludinii DSM 13811 T518DRAFT_scaffold00041.41_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3583 29 100.0 32 ............................. GACGTGATGATACACGCGATCAGTGGCAGCAA 3644 29 96.6 32 .......................A..... AACCATCTGCAAATGTGCTATAATGAACACAA 3705 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGAGCCCCGCATGCGCGGGGATGATCCC # Left flank : GAAGGAAAAGAAAGGCGCACAGTTATTCATCAAGACTGTCGCGTCTAAGCTCGGTAAGCGCATGGGTGTCAAGTCGGATAAGATCATCACGGAGGAAGCAAAGGCGAAAGAGGGTATTGGCATCCTTGATTACCTGATTGCCTCTCCGTCCCGTGTTGCTACTCGCGTCAAGTCTTTCCGTCAGTTCTACCGCATGGGTGTCCGTGCTATGGACGTGCTGACGGAGCGCCGGTCTTATTACCAGCGCAAACTCGGCAAGGCTATGAAGCTCGTCAAGAGCAAGAACGACTATGAGGAACTGACGGATATCCTGCTCAGCGGCGACGCAGAGGGCAAAGAGTGGACAAAGGAAGAGCTTATCCAGAGCGGCACGAAAGAGAATGTCGCCGAAGCTTACACGCGAATCCGCCGTCTGATGCGTCAGGCGTACAAGATGGTCAACGAAGCGCATAAGCATCCGAAGACTTACTCGAAGCGCTTGTCTGACAGCAAGATTGAAG # Right flank : TTTGATAGATAGTCACATATCCATAATAGACGAATACAGGGATTATAATAGATTATATACGATGTTCATTAGTTATCTCGCTTAATCACAATAATACTCTTAATTTCAAATGCGTCAAAACATAAGTACATTCGCAATGGACACCATCGGATTCACATAGTGAATCATATTATATATAATACATATATATAGTATGTAATAGGAGTGATAATCTATGTCATTAAAACATAAGCTAAGAGTCATATGTGTAAGTAAAGATATTACATTGATAGATGCATTAAAAGCATACAATGTAAAATACAAAAAAGATATTAAGAATCCTTCTTTTTACAAAATGATTAATGATGAGACAATGAAGTATAGTTTACTGACGAAACTGTTGGATTCAATTGGATATGAAATTGTATTCCGTCGCAAACGCGATGTAGATCAATGAAAATGTTTTTCTAAATTCAATTTTGTGCAATGAATAGGAGCAGCGGATGTATGCTGATTTTCGT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCATGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNKR01000007.1 Mitsuokella jalaludinii DSM 13811 T518DRAFT_scaffold00007.7_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2 33 100.0 35 ................................. AACGAGGATCTCGGCAAATGGGTGCTCGATGTCGT 70 33 100.0 33 ................................. TATTGAGATTAAAACGGTAAAAGCGTAAAATTA 136 33 100.0 33 ................................. CTTGCACAGCGGTGCATCTGGGATATGCTCCAC 202 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= =================================== ================== 4 33 99.2 34 GTCGCTCCCTATGTAGGGAGCGTGGATTGAAAC # Left flank : CG # Right flank : TGGCACGTCTACACCATCCATGTAACGTCGCTCTCCGTATAGAGAGCATGGAAGGCGTAATGGAGGCGAAGGGGGAACGGCGGCTGTTCATGACGAAACGGCGTATTTTCATGACGCGGCAGGATTTTGACTTTGGCAGGGCGAATGCTATAATTATGAATGGAATCGTTTACGGATGTGCTGCGCGGAGGTCTACCGTGGCTCTGGCGCGGGCACGTGACGGGAGAAGAGAAGGCGGCTCCGGCTGGATGCAGGAGCTTGGAGCCGAGGAGGAATGGACATGACGCTGCAATTCACGGAACGCGAGGTGAAGGCAGAGATGGCGCGGCTCTCGAAGGAGTACGATATCGTGCGGCTCGTCGACCCGGAGGAATGCCATGCGTTTTCGGTCGGGGCGGACCATTCGTGCAAGTACGGCGAGGGCTGTTATTCGGTCTGGCGCAGCACGAACCGCTGCCGCAACTGCACGAGCCTGCGCGCACTCAAGACGGGCATGGAGC # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGTAGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 5-705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNKR01000035.1 Mitsuokella jalaludinii DSM 13811 T518DRAFT_scaffold00035.35_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 ............C................ ATGCGCGTATACCGCCTTGAGCTCTTTCGACG 66 29 93.1 32 ............C............C... GCTTCGCGGCATGCAGGTAATCCCTCGAGAAA 127 29 93.1 32 .....G...................C... AGGTACGCCTGGATAACTCATACACATTATAG 188 29 100.0 32 ............................. CATCCTCGCAAGCTAAACAAGAGCTGGAAGAT 249 29 96.6 31 ............................A GCGCGAACGCAATGAATCTCTGGCAGACGGC T [274] 310 29 100.0 32 ............................. ATCGCGCGCCTCTTTGTGCCGGTCGGCACGCT 371 29 100.0 32 ............................. GATAAGCGGCCCATTTTGTCGGATCTGCGTGA 432 29 96.6 32 ............C................ GCGACAATCGGTTCAGATGACATTACATTGAG 493 29 93.1 32 ............C..........A..... TCGCGTGAGGCGCTGCCGCGCTTCTTTGTCCA 554 29 96.6 32 ............C................ GGCGTCATCATGCATCTCCTCTATAAGCACTA 615 29 93.1 32 ............C...............T CGACACGGAGACCGTGAGCGGCGGCAGCGGAG 676 29 96.6 0 .............G............... | T [701] ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.3 32 GTGAGCCCCGCATCCGCGGGGATGATCCC # Left flank : TTTGG # Right flank : CGTAAAAGGGAGGGGGAGAAGTATGAGGAACATGATGAAAAAGATGGACGATGATGTCTTACCTGGGGCAAGATATCATAATTTTTAATATTTCATCAATTTTTTTAAAAGGATTTTCATATCGCTTATCGAATATATACTATGGCAAATGTATGAGGAAAGAAATGCAAAATGGTACGAGGATGATTTACGACTCGATGCACTGATTCTGACATGGTACAAAATGGGGGAGAGTATGATGGCGAAGGATGAGATGATATTATCATCCCCGGCACGGTCGTTATGGGGCAAGTTGTCGCTCGATGGTACACATCGTTGGTTGCCGCTCTGGATGCATTTAGCGGATACAGCAGAAATTGCGGATTTACTGTGGGCGCATTGGCTGCCGCCTCATACAAAAAATGTGATTGTAGATGGATTTGATTTTTCAGAATCGGTTTCAACGGCAGACCGTGAAATCTTTGCAGGAAAATTTGTTCGTTTTTTAGCAGCTTCACATG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCATCCGCGGGGATGATCCC # Alternate repeat : GTGAGCCCCGCACCCGCGGGGATGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 10452-10724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNKR01000035.1 Mitsuokella jalaludinii DSM 13811 T518DRAFT_scaffold00035.35_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10452 29 96.6 32 ............................T ACGCCAATGTGGTCAAGGTTGCCGCCTGTAGC 10513 29 100.0 32 ............................. AGGGGTGGCAAACGGTTGAGAACGAGAAAGTC 10574 29 100.0 32 ............................. GCACCAAAAACGCTCTCAGACATGCTCTCAGG 10635 29 100.0 32 ............................. GAGTGCATCAACAACCTCAATGTGGCTATGCT 10696 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGAGCCCCGCATGCGCGGGGATGATCCC # Left flank : TAGTAGCCGGGCAAGTAGTTGCATCGTATCAAGTGTTGGTTCATACGAAAAAGCCAATTCCACGTCCAATTGAAAAATTGACAGGGATCACGAATGAGATGGTATCTGCATCTGGTGAAAGCTTGGAGGTGGTGCTGACAAAAGTTGAATCCTTTATCGGCAAGAATTGTTTGGTGGGCCATAACATTGCGTTTGACTTGAGATTCCTGAATCATGCACTGCGGAAGCACGATTGTAGAATCATCACCAATCCCCACTATGATACCATGGCTCTATACCAAGAAAAGTGTGATTCAAAAAAACGCATAAGTTTGGCAGATATGATGACAGCCCTGGGATTATCTCAAAAGCCGATACACCGGGCCTTGCAGGATTGTCGAGCCGTGCAAGAAGCATATGAAGTATTGAGAAAGAAGTAGTGTTATAGGATAACTCGTAAAACTGAATAAAATATGGGATTAGATACCGAGAGAATGGCGTCATTATTGGGATTTTTTAGT # Right flank : ACA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCATGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //