Array 1 221294-220520 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NBEQ01000009.1 Ligilactobacillus salivarius strain CCuG47171 CCuG47171_contig_9, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                           	Insertion/Deletion
==========	======	======	======	====================================	==========================================	==================
    221293	    36	  88.9	    38	AGA..........A......................	ACGGTAGGAATGGGAATGAATCGAGATCATGTAGACCA    	A [221287]
    221218	    36	 100.0	    36	....................................	GGAATTTTACGGTGGTTTATTTATGATGAGTTTTGT      	
    221146	    36	 100.0	    36	....................................	TACAAGAAAAAATTATTGAACTAGACCAAGAAGAAG      	
    221074	    36	 100.0	    37	....................................	CGTACACAATGAAAAATTTAAATTTAAGTTTTACTTT     	
    221001	    36	 100.0	    42	....................................	GCAAGTTTTAAAAGCAAACATGAAGATAGTGGGAGCTACTGA	
    220923	    36	 100.0	    40	....................................	TCTAATTTACCTATCAAGGCAATTAATTTACCTGAAAACT  	
    220847	    36	 100.0	    38	....................................	TCAGTAGATGAGTTTAGAGATTTTGTTGATGAATTAAG    	
    220773	    36	 100.0	    34	....................................	TTACTGGCGATGTCATGGATTCCATTCCTTTCTA        	
    220703	    36	 100.0	    38	....................................	GAGGTGGACTCTCTGCAAAGAGGGGCTATTCCCGAAGT    	
    220629	    36	 100.0	    38	....................................	AGAATAAACGGAGGTACATTATTATGATTAAATTACAA    	
    220555	    36	 100.0	     0	....................................	|                                         	
==========	======	======	======	====================================	==========================================	==================
        11	    36	  99.0	    38	GTTTTCGTCTCCTTTATTCGGAGATATGTTCTTACT	                                          	       

# Left flank :   CATTTGAAGAATGACTAGGAGTTACGACTTGGTAAGCCTTAACATTGATATCTTTCAATCTATTAATAGTAAATAGCGCTGACTTCATTTGTGGCGTACCGCTAGACAAATTCAAAATTAGATCTTCATCTTCTTTAGAATATTTTGAAATTATTCCATTTAGTACTTCATACATTTTATCAAAAATAAATACTTCACTATCAGAAATGACTTCATCACTTTTTTCGATCATAGGATTATATCCATCTATAGAATTCAATGCTAACAAAATATTAGTCTCTTTTGATAAAGCACGCTCAGAATATATTAATAATATTTTTGGGGGGACGAAATACCCTTACTAAATGTAATAAAGCTCCATCGTGTCTATTTCTTATAGGATCTGTATCACCAATACACGATATTAATGTTGTCATAATTACACCACTTTCTAATTAGTTATCTATATTATATATTATTTTTTCTAATTTTCGCTTTCTCTTGTCTACTTTAATTAAATT
# Right flank :  ACTCTTTAATCAATTAGTTAATATATCAACATTATCGACATTTTTTACGGTACCCTAAACGGGCAATAGGTTAAATTAATAAGTATTATTTGGTCAAAATTTAGACAAGTTCTTATTCTTACAGTAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCTTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTCACTTCGTTAGGAAGTAAGTATAAAGTAATTGCACCTGATTTAGGTAATCTATCTTTTAACACTTTAATTACTCTATCTCTAGTAGAATTTTGTCTTACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCTAATTCTACTAATTTCTTATGATATTTAGTTGCTTCTTTTCTATTCTCTTTCGTGTCCCTTGGTAAATCAAAACATACTAATAGCATCATACTTATCTTCCTTCCTCAATGAAAGTCGGTAATTTCAATCCTGTAGCACTATTCTTA

# Questionable array : NO	 Score: 3.21
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTCGTCTCCTTTATTCGGAGATATGTTCTTACT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-6.60,-7.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,0.64   Confidence: LOW] 

# Array family : NA
//