Array 1 247123-246605 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXH01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3997 NODE_3_length_725853_cov_94.461430, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247122 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 247061 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 247000 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 246939 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 246878 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 246817 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 246756 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 246695 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 246634 29 93.1 0 ............TC............... | A [246607] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 264990-263437 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXH01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3997 NODE_3_length_725853_cov_94.461430, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 264989 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 264928 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 264867 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 264806 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 264745 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 264684 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 264623 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 264562 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 264501 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 264440 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 264379 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 264318 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 264257 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 264196 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 264135 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 264074 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 264013 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 263952 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 263891 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 263830 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 263769 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 263708 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 263647 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 263586 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 263525 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 263464 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //