Array 1 104920-103124 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPF01000002.1 Alcanivorax sp. 6-D-6 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 104919 28 100.0 33 ............................ CCACTGACCAGGAGCTGGAGCATCCCCCGTATC 104858 28 100.0 33 ............................ CTACTTGACGATCCCTGGCGGCAGCGGGCAGGG 104797 28 100.0 33 ............................ CCCGAGGACGTATACGCACGTTCTGGAGGTGGC 104736 28 100.0 33 ............................ CTTGATGTACTTGACCTCGATCACCGGGTGCTG 104675 28 100.0 33 ............................ TGCCTCATTGTGGGCTTCGGCCAGCTGTTCGTC 104614 28 100.0 33 ............................ TAGCATAGGGCGGCCCTTGAGTTAGCCGCCCTA 104553 28 100.0 33 ............................ TTCGACGCCTTTGGTGTCAGCGGCCTGACGGCG 104492 28 100.0 33 ............................ TTCCTTGCCGTGCCGCTCCATCCAGATTCGATT 104431 28 100.0 33 ............................ CGGCCGCCAAGGTGGTGATGCCAGCGGCACCCA 104370 28 100.0 33 ............................ CGGATACGGCGTGGCTCTAAAGCGGATCCGGGG 104309 28 100.0 33 ............................ TGCTCAAAAAAGGCAGCAAAGGCACAGACCGAA 104248 28 100.0 33 ............................ CGACACCAGCGGCAACAAGAACACGGTCCAGGC 104187 28 100.0 33 ............................ CTGGTGGCAAGTGGAGAGATTACGAGGTCGATC 104126 28 100.0 33 ............................ TCAGCGGAGAACAGCGATGAAATTCATCATCTG 104065 28 100.0 33 ............................ CAGTCCAGTCTATACAGGATACCCAACAAGCGT 104004 28 100.0 33 ............................ CAGGATCTTGCTGGGGATGTCGAGGGCGGCGGA 103943 28 100.0 33 ............................ CTGTTGAGCTGGTGCGAGAGACGGACCGGCCCG 103882 28 100.0 33 ............................ TGTGCGGCGCTAACTTCTCGCCTCGCTCTCCGA 103821 28 100.0 33 ............................ TGGCCTGGAGGCGCTGGCTGTTCGCGTGCCGGA 103760 28 100.0 33 ............................ TAGGTTGTGCGTTGGTGGTGGCCCAGTTCTTTC 103699 28 100.0 33 ............................ TATCGGTTCGCGTCCATACGCACCTCCTTGTCT 103638 28 100.0 33 ............................ CAAGTAAAGTGGGCAAGCCAGCATGATTGGTTT 103577 28 100.0 33 ............................ CGTGGTTGTCTGGCGCGGTGCCATCGTCCGGGT 103516 28 100.0 33 ............................ TTGCTGGTGCCCGCTGACGTAGGCGGCTGGACA 103455 28 100.0 33 ............................ TGCGCGCGTTCAAACAGCAGGCCATGTCCGACG 103394 28 100.0 33 ............................ CCATTTTCGGGATGGAGGCCGCCAGCGCCGCCA 103333 28 96.4 33 .........T.................. TGGCCCGAGCAAGGCGGCATCTATGCTGGCCTC 103272 28 100.0 33 ............................ CGCCGCATCTCTGCCCTCAAGGGCGTGATCACG 103211 28 100.0 32 ............................ TGGTGGTCGGTTATGGGGGGCATCTGTGTGAT 103151 28 92.9 0 ..............T.....A....... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.6 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : TTTACAAGGAACGTCTGTGTATTGATCTGGCTTTTGCGCTGACCCGCGACATGGCCGGGCGGTACAACAAACATAAGGTGTCTGCTGCGTTTCGGGAACGGGTAATTGAAATGGATCTGCTTGCCAAGCTGTCTGCGGATGTCACGGATATGTTGGGGGGCGGCCGTGCTCGTGGTTCTCGCAAATGACCTGCCACCTGCCGTGCGTGGTCGAATGAAACTCTGGTTCGTTGAACCTCGAGCCAATGTTTTTGTGTCCGGCGTCAAGGATTCGGTTGCTGAAACCGTGATCGCTTACCTGCACAAGCATTGCCCGCCAGAGTCAGGAGTGGTTATGTTCCGCTCTCTCTCCGGGCCGCCAGGCTACCAAGTCCACACTATCGGCCCGACCCGTAAAGCTCTGACCGAGATCAGTGGCTTGCAGTTAGTTATAGAAACCCTGAAATCTTAATAAACCGAAGATATTGTGTTTTCGGCGCAGCTCATTAACAATTTGTTGGT # Right flank : TAACTTGGTGCCCAGGGCGTTGATCTCCTGGAGCGTCGTCTCCACATCCATGTGGAATGCTCGCGTGATCGAATCACCAATAGTATTCATGAGGCTTCCTGTTCCCGGTAGGAAAAACGGCCCCCTCAGGATCAATCAGATGTCGTTGAAGCTGCCGGCAAAGACGTTTGTTGAGCCGGCGTTGAGGGCGGTTCATGAACAGGTTGGTCCACCAGCCTGGTGTACTCATCGCATTATTGGGGCCGGTATAGTGGCGGCGGATACGGCCGTTGTGGTCGCGGTCTTTGGCTTTGTTTTTGATGGACATCGGACATCCTCCAGATGGTTATCTAGAAGATGTCCCGGTAGTAATACCTTGAATGGCAGTGCTCATTCGGGTTTCGAGCCGTTCTGTCTGTCAGGGTGATGGCTGGCCTGGTATTTCGAGCAACGGAATAGAATAGCACTTTGGCGAAGAGGGCCAAGGGGTGGGATTCATTGAGGGTGCAGGCACCTTGAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59943-60139 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQPF01000018.1 Alcanivorax sp. 6-D-6 contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 59943 46 97.8 30 ............G................................. CGAAGGGCGGTGGCCAAGGACGGCAAACCG 60019 46 97.8 29 ..................................T........... TGGAGGGTGACCGCCATGGACGGTGGTCA 60094 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 3 46 98.5 30 CAAAAAATCGCCTGGAGCGATTTTTGACGTCGCGCCAGCGACGGCC # Left flank : CCCAGGCCAAGCATGGCGGCCACCTGGTCGTCCAGCTCCGGGTGGCGGGCCAGGGCGACCAGATTGACGCCCAGCCCGCGCAAGGTGTCCACGGCGGTCAGCAGCTCCACCTGGGAGGCGTCTTCCGGATGGGCCACGTCCACCACCACCGGCGCGTCCAGCAGCCACTGGGCGGCGTCTTCCAGGCGTTGGGAGATTTGTTGATGCAGACTGCGGGAGTCCAGATCCTTGAGATAGAGGACCGTCGCCATCAGCATGCGGCCCTTGAATTCGAAACTTGCCTTTTCCTCGATGGAAACTGTCATTGACTGGGTCTTTTTACCTGCTTATTGGGTCGAAGGCGGCCGCCGGAGCGGTCCCGGCCCCGGGGGAGCCCGCCGATGAGCGGGCCTTTGGAGGGCACTCGACATATCCGGCAAAGCGTAGACGAAACCGACAAGCGGCGAAAGACGCGCGACCCACGGTCATTGTTAAATTTGCCAATGTTGGGACCCGTCGAT # Right flank : CCGAAGGGCGGCCTTGTACCCTGGTCCGTGGCTGATTGAGTACCGCGGCAGCGAATGACTGGTGGACGGATTATCCCCTGATTTGCCATATTTGGTGATGACGACTGAGCGGGTGTTGGTTTTCAAGAGGAGATTGGAATGACTGAAATCAATATAGGAATAGGGCCTGAAGACAGAGAGAAAATCGCCGAAGGGCTGAAACGTCTTCTGGCGGATTCTTATACCCTGTATTTACAAACGCACAACTTTCACTGGAATGTAACCGGCCCCCAGTTCAGAGAACTGCATCTCATGTTTGAAGAGCATTACACTGAATTGGCGGTGGCCGTGGATGACATAGCGGAGCGTATCCGCACTTTGGGGGTGGCGGCTCCGGGCACCTATAAGGAGTTTTCGCGCTTGAGCTCCATTAAGGAAGTGGAGGGCGTGCCCGGTTCGGAAGAAATGGTGGATTTGCTGACGAAAGGCCATGAGCAGGTGGTGAGGACCTCGAGAGAGGT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAAAAATCGCCTGGAGCGATTTTTGACGTCGCGCCAGCGACGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.80,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //