Array 1 80651-79542 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOON010000003.1 Christensenella sp. NSJ-35 HPD3569_ctg03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 80650 33 100.0 35 ................................. CCACATAGCAACAGCGCTTCTTGATACACCTATTA 80582 33 100.0 35 ................................. TCCCTATCGGTATTTACTTTGTACTCTGGAATCCA 80514 33 100.0 34 ................................. CGCTCGTTATAATGTGCAAAATAATCTCACGGCA 80447 33 100.0 34 ................................. GCCTCAAATTTGGGGAGTGCAAATTCAAAGGTGG 80380 33 100.0 36 ................................. TCGGATAATTCCTCAAAGAACCCGCTGTTATCAAGC 80311 33 100.0 35 ................................. ATCAGAACCATAAGTAACCCGGTCTATTTGCCGGG 80243 33 100.0 34 ................................. AAGAGGTAGCGTCCGGCCTCTTAAAGCCTGTGGA 80176 33 100.0 34 ................................. TGTAGACTGGCTCAAGTAAGTTATCCTTAATAGC 80109 33 100.0 35 ................................. GTACTGTTCCCGAATACGCCGTCTATCTTGCCCGG 80041 33 100.0 35 ................................. TAATCCCGAATGGAAACACCCCAATAGAAAACGCA 79973 33 100.0 34 ................................. CATAATCACCGCTTTTTGCCGCCTGTTCCGTTTC 79906 33 100.0 33 ................................. AGGATTGTATTTGTCCATATCTCCCGTCCCCTT 79840 33 100.0 33 ................................. TATAGACTTTTATGGTCCCGGGCATCCAGATAG 79774 33 97.0 35 A................................ AAGATCACGAGCCGTACCACGGGCGAAAGCCATAT 79706 32 90.9 35 .............T-...A.............. GCTTTTTACTTGGTAGGTCTTGGTGATCTCCTTGT 79639 32 87.9 33 ........T....T-...A.............. AGGGTTGGAGATATTATCAAGGGAACCGATAAA 79574 33 87.9 0 ............ATG....A............. | ========== ====== ====== ====== ================================= ==================================== ================== 17 33 97.9 34 GTCGCTCCCTTCGCAGGGGGCGTGGATTGAAAT # Left flank : AAAAAACAATAGCTTAAAATATGAATAAAAGCCGCTCAGAAATGGACAGTTTTATTTCAAAGATGCACATGATAGCATGATAGAGAAAAGAAAGTTAGACGATTCTTTTGCATGAGGAGGAAAGCTTGCCCGCGTTGCCGGGAAATGCTGTCTTATGGGCAGGGGATATAATAAAATGCTGTTTTCGAGCGCAATAGCTCCTCAAATTGTAAAATGAGTTAAAGGGCATGATAAATATAGAGACAGATAGCCTTCGGTTTTATGACTTTGGCAATCAGTATTCCGGGAAAGTTATTCGCGTAGGAACTAAACCCAGCATCGACCTGAGAGGGGATTTAATTCTATAGTATGGGTGCGAACCCAAGGCAAACATAAAACTCCTGGAATGTTCGCACCTTAAATGCGAATTTTTAAAAGATGAAATGGGCATTATCAAGGAACTGATAATTTGCCAGACGCAAGATAGGCTTATTCAATCTTTTTTTTGAGCATATCTTGCG # Right flank : AGCAAATACCCATTTGATAAGATCAGGATATATGCGCCAGTATACAGCGGCGGATGAATATACGGAGCTGCGGTTTCGGTACATCTTTGAGAAGTTAAGAAGTACACAGCTTGAACGCTGCAAAATTCCTGATGACGGAACGGGACTACCGCCTCTTTGAGACCGGATGTGTGTAGACGGATAACGGAATAGAAGTGACGAACCTGTAGTTAAAAAATACTGTAAAAAGGCGGGAACAGCGCAAAAGCGGATATGCGCAACCCTGGCGATGTACAGTAAAGCAATTGACGATATTGTCCTTGTGTGCATTGATAGAATTTGTTATAATAAAGCCAATCATTGTTGTCTTGATAATAATTGATATTTTCATGAACTATGGTAGTGAAAATCAAATCATTACCAGACATTCTGGTAAATAAACGCTATCGATAAAAATGGAGAAACAATCATGGAACAGGTAATCAAAAAGAAACGCAGTTTTTTTGAACGCCCGGTTCTCT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGCAGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 253628-252140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOON010000003.1 Christensenella sp. NSJ-35 HPD3569_ctg03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 253627 32 100.0 34 ................................ TCTATTTTAGTTACCGTGCCTACGGTGCGATAAG 253561 32 100.0 35 ................................ GCCTGGAAGCGGCGCGGGACAATGCTGCTTGGTGC 253494 32 100.0 34 ................................ TCTTTTTATCCGCGTGATCTATTGCAATCGCTGC 253428 32 100.0 33 ................................ CTGCGTATGCGCCTGCATTCCGGGGAACAGGTC 253363 32 100.0 34 ................................ GTCAAAAAGACTTTGTCCCTCCCGGCTTGGCTTG 253297 32 100.0 34 ................................ CTTGAGTATATCCGAGCCAACGAGCAGGAATTTA 253231 32 100.0 33 ................................ ATATGTCAAAGGCCATCCTCTTCGCTCAAAAAA 253166 32 100.0 33 ................................ TATGATGCCTACCGATGTAGCAATTGCAATGAT 253101 32 100.0 33 ................................ GAATTCAGGAAATTCCTCTGCAAACAATTCTTC 253036 32 100.0 32 ................................ ATTGGCAGACCGGGATTGCCCGATAGTCAGGA 252972 32 100.0 36 ................................ ACAGTATGCCGCTGATCTTCTGCAAGAATTATTCTC 252904 32 100.0 35 ................................ ATCTGCACGGCTCCGTCCCCCTCAAGCCCAAGATG 252837 32 100.0 36 ................................ AGGTACATGGTAGGTACATGAAAGGCGGGACAGGGC 252769 32 100.0 33 ................................ ATTTCTTCGTCGGAAAAATATAGGTTATATGCC 252704 32 100.0 35 ................................ ACCTTAACATCTACCGGATCGCCGGTGCTCGGGGC 252637 32 100.0 35 ................................ ATCAGGTGGAGGGCGACGAAAAGGCCGCGCGGCGC 252570 32 100.0 35 ................................ GGTAACTGTGTAATCGCCGCCCGGCAAATTATTGA 252503 32 100.0 36 ................................ GCATTAATGCTTCGTTTTTCCCGGTGTTCCTTGATT 252435 32 96.9 34 ...............A................ GTAGCCGACATGGGCGGTTAGGTTAGCCCCTCTA 252369 32 100.0 34 ................................ ACAAGGACAAGTAATGTATCGGGAGTTGTGGGGT 252303 32 100.0 34 ................................ AGGCGTTCGTTGCAAGCGGCATGGAGGTATCTAA 252237 32 93.8 33 .............C...G.............. ACCATAAGCGTGCCGGAAACGGTGTACTCTTTG A [252223] 252171 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 23 32 99.6 34 GTCGCTCCCTTCGTGGGAGCGTGGATTGAAAT # Left flank : TAAGAGGGGATCTGGATGGCTATCCGCCATTTTTATGGAAGTAAAGGAAAAGATAAATGCTTGTTTTATTGACGTATGACGTTTCGACAGATACAGCTGCCGGAAGGAGACGGCTTGCCCGTGTTGCCAGGAAATGCCTGTCTTATGGGCAGCGGGTACAAAATTCTGTTTTCGAGTGCAATATTGACTGGAGCCAGTTCCTCAAATTGCAAAACGAGTTAAAGGGCATGATAAATACAGAGACAGATAGCCTTCGGTTTTATAACCTTGGCAATCATTATTCCGAGAAAGTTATTCATGTGGGGGCTAAACCCAGCATCGACTTGGAAGGAGATTTAATCCTATAGGGTGGGTGCGAACCCAAGGCAGACATAAAATGCCTGGAATGTTCGCACCTTAAATACGAATTTTTGAAAGACAAAATGGGCATTATCAAGGAACTGATAATTTGCCAGACGCAAGATAGGCTTATTCAATCTTTTTTTTGAGCATATCTTGCG # Right flank : TGCTTCACGGTCTCGTAAAGCCCGATGGACTGGTGTCGCTCCCTTCGCAGGGGGCGCAAACCGGCCTTCAATCGTAACAGTGGTTTCGGTAAAAAGATACAATGTTTTATTAATTAAAAAATGTTATCAAATAATTAAGCTTTTTTCAGCCGCTCCCGCCACCTTTTGACCAGGCTGATTAATTCATCCTGCGGAAGCGGCCTGCTGAAGAGGTATCCCTGAAACTCATTGCAACCGAGAGCCAGCAACTTATCGCGCTGTTCCGGCACTTCGACATATTCCGCCAATACGGAAAAATGAAGCGATTTTCCCAGGCTGACAATAGAGGAAATGATATCGCACGACCTTTTGTTTTGCAGCATATCCCGGACAATCGACCCATCGAGCTTTACTTGGTCAAACTGATTGTTCTGCAAATAAAGCAGCGATGTATGCCCCATGCCAAAATCGTCAAGCGAGAGGTTATAACCCGCCTGACGCAGCCGTTCAATCGTCTGGAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //