Array 1 453948-455440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQUA010000002.1 Salmonella enterica strain S15 NODE_2_length_633265_cov_110.986555, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 453948 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454009 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454070 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454131 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454192 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454253 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454314 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454375 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454436 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454497 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454558 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 454619 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 454680 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 454741 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 454802 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 454863 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 454925 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 454986 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455047 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455108 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455169 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455230 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455291 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455352 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455413 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471572-473475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQUA010000002.1 Salmonella enterica strain S15 NODE_2_length_633265_cov_110.986555, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 471572 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 471633 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 471694 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 471755 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 471816 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 471877 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 471938 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472000 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472061 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472122 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472183 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472244 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472305 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472366 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472427 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472488 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472549 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 472610 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 472671 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 472732 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 472794 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 472897 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 472958 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473019 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473080 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473141 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473202 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473263 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473324 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473385 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473446 29 96.6 0 A............................ | A [473472] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //