Array 1 43178-43810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQJD01000047.1 Porphyromonas cangingivalis strain COT-109 OH1386 contig_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 43178 37 100.0 37 ..................................... CAAGTAGTAGGAAAAGCATAACCGTGTTTTAATAGAA 43252 37 100.0 38 ..................................... AGTATTTGAATTAACCCATGCACTATCGTCACGAAGCT 43327 37 100.0 35 ..................................... CATTGAACCAAAGCTAAGACCACAACAAAAGTTGG 43399 37 100.0 38 ..................................... CAAAAGCCCACTCGCTTTGGAAGTGGATATCTTGTATC 43474 37 100.0 39 ..................................... TGGTACTCACGTGGAGCTCTTTGACACCGCCATAGTAGG 43550 37 100.0 40 ..................................... TCTCTAAACAGATACGCTTCTACTACGTGTCCCATGTGCC 43627 37 100.0 35 ..................................... GGCAAACTTTTAAGTTCCTCATAAGTCCAACCATT 43699 37 100.0 38 ..................................... CTCTTCTCGACACCTGCCGATGTAAAGCCTTTTATAGG 43774 37 83.8 0 T...........................GGC..C.G. | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 98.2 38 CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Left flank : CGATGAAGCCATCTTAGACACAGGGTATCCCGCCCTTATGTCTGTCCTCTCCTGAGCGACCCGACATTCATCACCTTTGTTTGCTCTTGGAGTGGATTTCATTTTCGAAAAATTTTTGACTCTGTTGAAATTCACTTTTTGCTGTCTATCAGAATGTTATCGAAAATATAGTTTTGCGTCTATTTTCGAAAATCGCAGCAGTCGAACTGATGGGGAGTCTATTTTCGAAGAAATGCAACTTTGTCGATTTGTAACCGCCTGATAATCAATAGTGCATAATGAGCGTTTTTCGAAAATCGAAATAATTGATTTTTCTTGTTTGGTTTTTCGAAAAATCAAAATCTTTATATATCTTTGTCGTACAGCAATTTGAGGGCTGCTTTTGACCTCAAAGTGTTCATACAGATACATTCAAAGAGGGCGATTTTCGAAGAAATGACCACTGCTGATTATCAACTATTTACAAAAGAGGTGTTCAGTAAGTTTCTGAAAATCAATCT # Right flank : CATAGCGATGAAGCTCGATTGATCAATATATACTTGAATAGATAGGGAGAGTCACTAAAAAAGTCGTTAAAGGCGATGAATCGTCTTTAACGACTTTCGTTATCAAGTCTAACGACTTTTTTTGTCGCTTCCTATGACTTTTTTCTCGTCAAGAGGATATGGTCTCAATATGGGTGTCTATCAGGTGCTTCTCGATGAATTGCTGTTGCTCTCCGTTGATTGTGCATTTGCACTCTTCGGGAAAGGTTGATGAGTCCGGATTGTGTCATTTTGTCTTATTGCATTTATTCTTCCAAAGATTCTGAAATGTCATTAAATATTTTTATCTTTGTTTAACTCGCCTCGCCGGGTTTTATAGCCAAAGGCTCCTTGAAGAGGGTGTCACTCCAAAGGGTTTCGGCAGGAGGGGAAGAAGGTGTCGCTCTCAGATTTATACTTATGAATAACAACAAGCCGTACAGCAGACATATCTTCATCTTCCCATTTCAATGGGACTATAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 129831-130384 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQJD01000060.1 Porphyromonas cangingivalis strain COT-109 OH1386 contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 129831 37 97.3 37 ............G........................ TCCTACACCTTTAGTTAGTAGAGAAATACTCTTCTGC 129905 37 97.3 36 ............G........................ CGGTACAGTGTCTCGCCTTTTTCGACGCCCTCGACT 129978 37 100.0 38 ..................................... CTCACATCAAATTTTTTACGAGATGCACCTATTGCAGA 130053 37 97.3 37 ............G........................ AACTTATCTATTTTTGTGCCGAAAAAGACCGGGCCAC 130127 37 100.0 38 ..................................... ATAGGGTATTCCCTTCTGTTGGTATATCTCGTATCTTG 130202 37 100.0 37 ..................................... TGCTGATGGCTTCGGCAAATGACTTTAGACCGTCCTT 130276 37 100.0 36 ..................................... GAAGTCGTGTACTCTGCAAGCGATGGCCTGTTCTGA 130349 36 89.2 0 ........................G...-..C...G. | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 97.6 37 CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Left flank : ATTCGTTTTCGACCTTCCTACGACTTTATTTTGCCCCTCTTTACACGTGGCTCAGGGGGCGAATGAAGATACTCGGATGTGACCCGAAATCCTGAAACTGTTTTCGAAACTTTTTTGATGGTCGCGATTTTCTTTTCCTTTTGAATATCAGATTATTGTGTTTTTTCAGATGTGAGATGGGATTTTCGAAAATACTTGCGCCTGCTCTTTTCTTCACTCTATTTTCGAAGAAATGCCGTTTTTGCTCATTCTAACCTCCTGATTGTCAATGGTGCTCTGCTGTCAATCTTCGAAAATCGAAAATCGTGAAAATTCCTCTCTGAATTTTCGAAAAATGAAATTCTTTGTATATCTTTGTCTCGCAGTGGATTAAATAGAGGTTGTGACCACATGATGTTCACGTAGGAGCATCTCCGAATAGCGATTTTCGAAGAAATAATGAATGCTGATTTTCAGCGTGTTAAGAAAAGGCTTCTATTCAAGTTGCTGATAGTCAATCT # Right flank : CTTTTGAATTATTTGTCGTATCTTTGTGGTGAAGAGGTGAGAGCCTCTCCGGTGAGGTGTCTGTAAGGCATCGCGCCCCCGGGGAGATGAGAAATCATCTCCTCCTACTTATTATATAGGCATACTTAGTTGCCACGTTTGTAGTGTGTTTATAAGATAGAGGGTTGCCCTTTTTCGAAATATGATCGGATAGAAGACAAACAAGACTGCCCCCGAAAAGTCGAATGAGACTTTTCGGGGGCGGTCTTGTTTATTTGGTGTGCCGTATGGCCGTCTTAGGGTGTGGTCACACTTCGGGCTCGATGTTGCCCGAAGCGACATAGGTGCGCCATTTCTCGATCAAGGCTACCATGTCGGAAGGAAGGGGGGCTTCGAAGGTCATTTCCTCCTTCAATATGGGGTGATAGAAGCCGAGGGTCTTGGCGTGGAGGGCTTGTCGGGGGCAGAGGGCGAAGCTGTTTTCGACAAACTTCGTGTACTTGCTGAAGCGATTGCCACGC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Alternate repeat : CTATCTATACATGTTCAGTCATTAAGACTATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 6256-216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQJD01000008.1 Porphyromonas cangingivalis strain COT-109 OH1386 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================ ================== 6255 33 100.0 33 ................................. ATCTATGTATTCTGTTCTGTCGATCCTTTTGAA 6189 33 100.0 33 ................................. GACATCTATGAGTATGCTGAGAATCCAATCTTC 6123 33 100.0 33 ................................. TCCTCGGCGCGCTTTTGGAGCTTTCTTGCCCCC 6057 33 100.0 33 ................................. GCCCTCAAATATATTTTGAGTTTTGGCTAATAA 5991 33 100.0 36 ................................. TCGTCCGACGAAGTCCTCGGGGGCGGACTTAACGAT 5922 33 100.0 37 ................................. CGGGCTCAAGGTACCCGAGGGCGCACTCAAGCAATAC 5852 33 100.0 35 ................................. AGTGGAGCGGGGAACAAGACTAATGACATCGCCTT 5784 33 100.0 34 ................................. TAGCTGCCATAGTTGTAATTGTTTGTTGTTAATA 5717 33 100.0 35 ................................. CGCTATCATTTGGGCGTCTGCAAAACTCAAAATCC 5649 33 100.0 36 ................................. GCCCCATGAACGTGAACGAATTGACCTCATCGCTGT 5580 33 100.0 35 ................................. TGAATAACCTACAGGTATTATAGCTAAAAATATAA 5512 33 100.0 35 ................................. ATACGCAACACTTCTGATACTTCAATAGGAACATA 5444 33 100.0 34 ................................. ACTGGTTGCTATCTGTATATGATCAAATGGCATA 5377 33 100.0 34 ................................. CTTGTCCTCCGCCTTTTCGAAGATACTTTTGATC 5310 33 100.0 35 ................................. CACTTAAATTATAAAAGTTATTACCCCTATCTACA 5242 33 100.0 36 ................................. ATTATAATTGGGAGTTAGATGGCCGATACAACCTTG 5173 33 100.0 35 ................................. TTGTTTGCCCCTCACCTGACATTACTTTCCGGAAA 5105 33 100.0 34 ................................. CCGGAGTATCTATGCCGTGTCCGTTGTCGATGAT 5038 33 100.0 37 ................................. TCAAACCGCCCCTTTGCCGGGGCAAAAGTGGCACAAG 4968 33 100.0 34 ................................. GATTGGCATTGGTAGGGTCTCGATCTCCTCGGGG 4901 33 100.0 34 ................................. TTCGGCACGCCGCCGGCGAAGTCGTAGCCGAAAG 4834 33 100.0 35 ................................. CCGGGCTCGGGCTTAGGGGGGATGGCCGACCACAG 4766 33 100.0 34 ................................. GGTCGGAGAGGGAGAATGTATGCTGCGCCTCCCA 4699 33 100.0 34 ................................. CTTGTACATCACCTTCGGTGGTGGGGTATTGGTA 4632 33 100.0 34 ................................. GATCCCTGCCGATCTCGATTATTCCAAGTATCGC 4565 33 100.0 33 ................................. TGAGTTTAAGCAAACAACAACCGGCATAGTTTC 4499 33 100.0 34 ................................. GGCAGGCGAGAGCGCAAGTGGGAGCATCACCAAG 4432 33 100.0 34 ................................. CGACAAAGCCCTTGAAAAGAAGTATTGGGTGGCA 4365 33 100.0 33 ................................. AGCGCAATCGAGTTTAAGCCTAAACGACTCGCG 4299 33 100.0 36 ................................. ACAGCGGACAACGTGACACAGGCAGACCAGGGCATT 4230 33 100.0 34 ................................. TCGGGGAGGTTTGACGACCTCATAGATAAGCCAA 4163 33 100.0 35 ................................. GTATAGTAACACCCTGATACCACCACCTCCGCGCC 4095 33 100.0 33 ................................. GGATGGTGCGGCCAAAGGTACAGAGGGTTGTCG 4029 33 100.0 33 ................................. GGAGCTAAGTGCTTGAAACCCACACCCCCTCTC 3963 33 100.0 36 ................................. GGATTGTACCACCTCATCGGTGATGGAGAGCGAGGG 3894 33 100.0 35 ................................. ACCCCTAAGGCGATAGAGCCGGGGGCGCCCGAGAA 3826 33 100.0 35 ................................. GGAGGGTTTGAGATGAGATACACACCACACGCATA 3758 33 100.0 37 ................................. ACAGAAAAATACGATGTGGCTATTACTTACGATCCTA 3688 33 100.0 36 ................................. GGTACAGGTGATGCAGTGATCGTCGCGGATGGTGTC 3619 33 100.0 34 ................................. GTCTTTTTGATTATTTCAACGCCTGCGAGGTGTC 3552 33 100.0 33 ................................. AGCATCCCCGAGATTTGTCGCTTTTTTGGGGTC 3486 33 100.0 35 ................................. TTGGCTATCCGATTATGTACAACAATCATTATGGA 3418 33 100.0 35 ................................. TAACTCGGCAATCTCTTTTTCTACGGCTTCTGCCT 3350 33 100.0 34 ................................. TTCTGCTACGTATATTGATGTCATCCGTAAGTTC 3283 33 100.0 34 ................................. GGCACTTTGGTTGTTGTCGCTTGTTGTCACTCTT 3216 33 100.0 36 ................................. ACGGTGCTAACCGCACAGGGCGGTGGGCGGGTCGTC 3147 33 100.0 33 ................................. CTGTATGAGAAGAATAGATAATCTTATTAAATA 3081 33 100.0 35 ................................. AGGGATATTCCCCCACGCTGCGATGGAGAGTTCCC 3013 33 100.0 35 ................................. AAACTCACATTTTTCCTCATTGGGATCAATACAGT 2945 33 100.0 35 ................................. TTGCTTTATCTCGCTTAATTGAGCACCTTTAAGTA 2877 33 100.0 34 ................................. GAGACCTCTACGGAGATCAAGGGGGGACTGGTCG 2810 33 100.0 34 ................................. GTGTCATAACTAACCATTCCAACAACAACTATGA 2743 33 100.0 35 ................................. GCAGAGTCCTGCTCCGTCAACTCTAATCTTAAGCT 2675 33 100.0 34 ................................. AGCGATAGGTACAGCAGTGCCCGCCATCACCGCT 2608 33 100.0 33 ................................. TTGAGCCCTGCGAGCTCGCCCATCTCAAGGAGC 2542 33 100.0 35 ................................. GCCAAGGGGGATATATGGGGTGATTACTGCCTATT 2474 33 100.0 36 ................................. CGGTATTGCCCGCTCGGGTAGCAGTGGCTACTCATC 2405 33 100.0 34 ................................. AGAACTTCAAGGTCTTGAATTAAATTTGACCCCT 2338 33 100.0 36 ................................. TCGACTTTTGGAGTGGTGTCCGCAAGTCCAAGCAGA 2269 33 100.0 34 ................................. AGAATAAGAATTTGGAACTTCAAAATAGAGGACT 2202 33 100.0 34 ................................. ATCTATCGCCCACGGAGGCGAAAACAGCACGCAG 2135 33 100.0 35 ................................. AAATCTGTTTGACTCTGTGTATATTCGGTACTCGC 2067 33 100.0 35 ................................. GGAGTTGTTGAGTCGCACAGGTTTAAGGGCTCTGA 1999 33 100.0 33 ................................. GCATCGGCAACGTGATCAAGTACGTATGGCGTG 1933 33 100.0 32 ................................. TTGGACTTTGCAAGTTGCTGATGTGATATACA 1868 33 100.0 33 ................................. CACAGGGTCTTGAGTCGGTCGGGGTTGCGACAT 1802 33 100.0 34 ................................. CAGTGGCATTGACCATCACCGATGATCCTTTTTG 1735 33 100.0 35 ................................. ACTCCTCTTTTTGAGGGTTGAAACGCCCTTGAAGT 1667 33 100.0 34 ................................. GAGCTCCGTATCGCTCTCTGATCTGAGTGTCGGA 1600 33 100.0 33 ................................. GAGAAACGATCGTAAGAAGAGACTTTCAAGTTC 1534 33 100.0 34 ................................. AGCCTTAGGCTAAATAAAAAATGGAATACAGTAA 1467 33 100.0 36 ................................. ATCTTTTGATATTGAAGCGTTTTTAGCTCCTCTATC 1398 33 100.0 30 ................................. TTGTTTTCTATGTTTTAGTTTTACAATGGC 1335 33 100.0 34 ................................. TGTCACCTTGTCGGCAACAGGTCTATCGGCAAGT 1268 33 100.0 32 ................................. TTCTCGCATTGTTATTGACAAGCCTGATTATA 1203 33 100.0 34 ................................. GTGGTCGACAGTCTCAGTCCGCTCGCTGAAAAGA 1136 33 100.0 35 ................................. ATTGTTGTTGCGCCACCGTCCCATATCCAGGGACG 1068 33 100.0 34 ................................. CGAGCCATACTGCGTAGTAGGACGAGCAGAGGTA 1001 33 100.0 34 ................................. TTACTGAAAGTGGGCATAACCCGAGGGTCATTAT 934 33 100.0 35 ................................. AAGGGCGATGCGCAAGTGGTCACGCTCCGCCTCCG 866 33 100.0 35 ................................. TTCGGTTTTCAGCTCTCGGATGGCTGACTCGTGGT 798 33 100.0 34 ................................. CGATTGCCAAAGAGGACATTATCGACGGACGGAT 731 33 100.0 36 ................................. GAGGTTGGGAGAGCTGTCAGGGTTGTCACCTTGTTA 662 33 100.0 35 ................................. TCTTCGACGGCCGCGACCTCCACATCGAGGTGGAG 594 33 100.0 34 ................................. ATAACCGCGTTAGACCACCAACGAAAATATAAAA 527 33 100.0 36 ................................. GAGGGGCATAAGGTCTTGGTCATAGCCCCTAAGAGA 458 33 100.0 34 ................................. ATGTCCTCGGTATACAGTTCAAGCGTAATGGCAC 391 33 100.0 44 ................................. CGATGCTGAGGTATATGGGCTGGCGGTACACTACGTCGCAGCCC 314 32 87.9 34 A..-.GN.......................... CGATGCTGAGGTATATGGGCTGGCGGTACACTAC 248 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================================ ================== 90 33 99.9 35 GTCGCAGCCCATCCGGGCTGCGTGAATTGAAAC # Left flank : CGGTCTTCGAGTGCCTCGTAGATCCGGCGCAGTTCGCTGTTCTCAAACACCAACTCCTCGACACCATCAATGATGAAGAGGACAGCCTCCGCATCTATCAACTTGGAAAGAACTACCGCTCACATATAGAGATCTACGGCCGTGCCACATCCTTCGAGATAGAGGGAGAACTCATCATATAGCCTCGTACGTCTCCTACGCTCCCCTTAAGATAAACCTCCAACGGTAGCAAATACATAACAACGAGAGGAATTCCTCGGCATATAGACATATCTTCAGTCTCAACAATCAGATTACCCCACACAAACAAACCAACAACAAAAAGTTTTCATCTGCGAACCAATAGTGCACAGCAAAAAGCAGGCAAATTCGCACCCACAGATAATCAGGGTCTTAAATTGCTTGTGCATTGTATTTAATCCACTATCGACTTCAACGAAAAGCCTCTCGCAAATCAAGCCTTCAGAACCGATATAAAATCTATATCTTTGTGGCATACT # Right flank : CATTCAACTACGTCAGTTCGACGTAAGAAAACGAAGAATGAAACAATCTCACCAACTTTATTAACTGCCTAATATTGTTGTTGTTATAATTGAAAAAGTGGCGAATTATTCGTATATCAGTATCTGACAATCAAGGTGATACACACAAATAAAACGCCACTTTATGAAGACAAATATAGTTGATATTTTTTGTATGGTAGATGACTTCTCAATGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCCCATCCGGGCTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //