Array 1 58739-57517 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MRXX01000001.1 Streptococcus lactarius strain CCUG 66490 66490_contig_0000001, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     58738	    36	 100.0	    30	....................................	CATTTGCTCAGTTTGTCGGCTGGGAGAACT	
     58672	    36	 100.0	    29	....................................	CATCTGTTGAGCCACCTGTTGCAGTAATA 	
     58607	    36	 100.0	    30	....................................	TTGGACGATAGGATCACGCTGGACGAATTA	
     58541	    36	 100.0	    30	....................................	CGCAACAATCGCAGCAGTCGCAACAGTAGG	
     58475	    36	 100.0	    30	....................................	TATCTAGCTGGTATGTCAATAACTAAGTTG	
     58409	    36	 100.0	    30	....................................	TCGGCAAACGGAAAAAATACCAATTATTAC	
     58343	    36	 100.0	    30	....................................	AGTTAGAAGCGTATATTGAACAGGCTGGAG	
     58277	    36	 100.0	    30	....................................	TTTGGAATAATCTTATAAACATTTCCTTTA	
     58211	    36	 100.0	    30	....................................	TCGCACTGGTCTGGCTCTCTGGTCTGATCT	
     58145	    36	 100.0	    30	....................................	ACGACCAATCTTGTCACGGAATACCTTTGA	
     58079	    36	 100.0	    30	....................................	CTTTGGTTGAATGATAACTGCTCCGCAATA	
     58013	    36	 100.0	    30	....................................	AAACAGATGCACCAGATAAGCTCTCACGCT	
     57947	    36	 100.0	    30	....................................	AATTCCCGTTACGCTTCCCGTGAGATATTG	
     57881	    36	 100.0	    30	....................................	AGAGCTTCAGGAATTGCTTATTGGGTTCCT	
     57815	    36	 100.0	    29	....................................	AGTTCCAGCTTTCTTTAATCCATCAGTAA 	
     57750	    36	  97.2	    30	...........A........................	CTGTCATGCCATCACGTTTGAACGCGTTTA	
     57684	    36	 100.0	    30	....................................	GATTGCTTCATCTTGCTATCGAATGTCCCA	
     57618	    36	 100.0	    30	....................................	AAGACTATCGTCATGACCACCGACACGGGC	
     57552	    36	  94.4	     0	.............................T.....T	|                             	
==========	======	======	======	====================================	==============================	==================
        19	    36	  99.6	    30	GTTTTAGAGCCGTGTTGTTTCGAATGGTCCCAAAAC	                              	       

# Left flank :   ATCAATTGAATGAAAAACCTGAAGTAAAGTCAATGATTGAGAAATTAGTCATAACGATCACTGAATTATTGGCTTATGAATGCTTAGAGAATGAATTGGATCTAGAATATGACGAAATCACTATCCTAGAATTGATCGAAGCATTAGGAGTCAAAGTAGAGACACTGAGTGATACGTTATTTGAAAAATGCATGGAAATTGTGCAAGTTTTTAAATATCTTTCTAAAAAGAGACTTCTTGTTTTTATAAATGTTGCTTCTTACTTGTCAGAGAAAGAATTAGAAAGTTTGATGGAATATATTAGCTTAAATCAATTATGTGTCTTATTTATAGAACCAAGGCGAGTTTACAATTTTCCACAATTTGTACTAGATAAAGATTATTTTTTAAATACTGAAAATATGCTATAATAGCAGTAATGAAGGGATTCAGACGGACTGAAGTCTAGCTAAGACGAATGGTGCGATTACGAAATTTCGAAAGAAAAATTATTCTACGAG
# Right flank :  TTATTTTTTGTATGTTATAAAGGAATATTTTAAAAATGAAGGGATTTTCTATGGAGAGTGATGTGTTTTTGGATTATTATTTAAAATCACTTAGATTTTATTTTGGTGATAGGTGTAAGGATATCGGATTTATAAAGTTTTTCAAAGATGAGAATAATTGTTTTATTACTATTGAGGATTATGTTTTGGAATCATTTGTAGTATTGTCAAATATTTTGAGTAAGGAGAGGATTGTGTTTTCTTGTGGAATTATTCATAGTAAGTGGGGAGTTACTGGAGTAGAAGTATGTATGAATGTATTAGAGTTAGAAAGATTAAATCATTTGTATAAGATATAGTTTTAAAGAATATTAAAAAAATAAGGGAAACTGTCTATGTAGGATGTGTGGAGTTGATAGTATCAATGCTTCCTGGTTTTAGAGCTGTATTCTTTCGAATGATCCCACAACGAGAAAAACAAAAAATGATGGTCTAGGAGCTCGATACATTGAGCTTCTTTT

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCCGTGTTGTTTCGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-2.10,-3.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//