Array 1 796363-799753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESVL010000001.1 Corynebacterium ulcerans strain 20-SIC-1 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 796363 29 100.0 32 ............................. CTCCAATTGGGGCGATTGCTCCGGTGCTCAAT 796424 29 100.0 32 ............................. AGATTTGCGTTTCTTATCCGAAAGGCCTTTTT 796485 29 100.0 32 ............................. CCTGCGAGAAATTTTGACCGTGCACCCCTGGA 796546 29 96.6 32 ............................T GGCATGGGACGTCAATTTTGCGCCCTAGTTAT 796607 29 100.0 32 ............................. ACTGTGAAATTCGCGAATGCCGGGGTTATAAA 796668 29 100.0 32 ............................. AAGGGCACTCTGCCTGCAACACTTGCAGGCTT 796729 29 100.0 33 ............................. GGCTTCCGCTGGCTCCCCGCCCTTCGCGTGGTG 796791 29 100.0 32 ............................. CTATTGAGGTGCATATTAATTCATATGGTGGT 796852 29 100.0 32 ............................. CGCTAAGGCTTTCGCGTCTCCGTTTTCGTCTG 796913 29 100.0 32 ............................. TTGAGTTGGTTCCATTCCTCATTCTTTCCGCT 796974 29 96.6 32 .....................A....... CAGCGCCCATATGTGGATCACCCCGATGCCGC 797035 29 96.6 32 ............................T ACGATGGTTCGTTCTTCTGTGGATGCTGCGCT 797096 29 100.0 32 ............................. AAGGGCACTCTGCCTGCAACACTTGCAGGCTT 797157 29 100.0 32 ............................. GGTTTCTAGCCATAATTATTTTCCCCTTTCAA 797218 29 100.0 32 ............................. GGAGAAGTGGCTTACTGCCGAAAAGTCTACGA 797279 29 100.0 32 ............................. AACCCGCGCTCGCCCTAATCCTCATAAGATTT 797340 29 96.6 32 ............................T AACGTCCCAGTTGTTAGGGATGGATTTTTCCA 797401 29 100.0 32 ............................. GGGCAGGATTGATTCTGGGCATGATGCGGCGT 797462 29 100.0 32 ............................. GTATAAAGCAGCGCACTCTGATCTTTCGCAAA 797523 29 100.0 32 ............................. CAAGCCCGCTCGGGATCCTTCAAAAGCACATC 797584 29 100.0 32 ............................. AGATCGCTGATTTGCAGGATGATCAAGAAGCG 797645 29 100.0 32 ............................. AGTGCAAGGCTACTCTTATAGCTTAATGGATG 797706 29 100.0 32 ............................. ATGCCTTTCTCTAGAGCCGCCAACGCAGCTAA 797767 29 100.0 32 ............................. GCTACGAGCAAGCCGGCATCCGCGTCTGCGGA 797828 29 100.0 33 ............................. GTGTGATCCGATTGCATCCCGTAAGGAATACAC 797890 29 100.0 32 ............................. ACATCTGTCAATGAGGGGGATGAATTAGTGAT 797951 29 100.0 32 ............................. TGCTAAGGCGTTTGCGTCTCCGTTTTCGGCTG 798012 29 100.0 32 ............................. AAAGTCAACGGTGGGAGCGCAAGGTTCCTTGA 798073 29 100.0 32 ............................. GTTGAAAGTTTCAACCTCGTACGCTAGGCGAG 798134 29 96.6 33 ............................T TGCAGGGACAGGGCTTTAGACCGGCGATCTGCG 798196 29 96.6 33 ............................T TGCAGGGACAGGGCTTTAGACCGGCGATCTGCG 798258 29 96.6 32 ............................T ATTAAAGAAAAGGAGATGGTGTGATGGAACGC 798319 29 100.0 32 ............................. AAGAGAAAACAGAAACGATGAATAAACCACTG 798380 29 100.0 32 ............................. TCAAAGAAAAAGAAAAAGAAGAAGATAATTAA 798441 29 100.0 33 ............................. TTCTTCTGGAGTTTCTGCGGTGATGAAGCGGTG 798503 29 100.0 32 ............................. CTGCGAAAACACAAAACCCCAGCCCACCAAGG 798564 29 100.0 32 ............................. CTCATCAGGAAGGTTGTAGCACTCATCAAAGA 798625 29 100.0 32 ............................. CAGCCATGCGTGCACCGTTTTTGTGCATGATG 798686 29 100.0 32 ............................. TTTTCACTCCACCTCCTTCCCTTTCAGGCGGT 798747 29 100.0 32 ............................. GCCTCAATCAAAGGATCCAGCGTCGCCGCAGA 798808 29 100.0 32 ............................. TATCTCAAGGAAAAAGACCGGCTGACTGCGGA 798869 29 100.0 32 ............................. TCCGGGCTGGATGCCCATAAGTCGGCGCGCAT 798930 29 100.0 32 ............................. CTGATGGAGCGGGGGCGCTCCCTTTCTGAGCT 798991 29 100.0 32 ............................. CTCCAGCTTCTCCCTCACCTCTCTAACTTCCA 799052 29 100.0 33 ............................. TGAGGTTATTTATTTGGTGAGGGAGTGATCAAA 799114 29 100.0 32 ............................. TCCTCGCGATCATCGGAGGAGCCATCGACGCC 799175 29 100.0 32 ............................. AGAGATTACGCAGGCAGGCCAAGTCCATGAGA 799236 29 100.0 32 ............................. CAATCAGCCCTCCGAATCGGCAAGCATACTGC 799297 29 100.0 32 ............................. CGATGGAATGGTGACTTTCATACATGAATCTG 799358 29 100.0 32 ............................. CGAAGCTCAGAGCGCAGCTCCACCCACACCTC 799419 29 100.0 32 ............................. ATTGAGGCTTATGGTAGGCATCTGACTGCGGG 799480 29 100.0 32 ............................. TCTCTACACATGGTGTAACGGGCCAATGCACA 799541 29 100.0 32 ............................. ACCCGGTGCGTGGGCAAAACCCCGCCCCGTCG 799602 29 100.0 32 ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 799663 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 799724 29 82.8 0 ....................A...AGC.T | A [799743] ========== ====== ====== ====== ============================= ================================= ================== 56 29 99.3 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 203733-204208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESVL010000004.1 Corynebacterium ulcerans strain 20-SIC-1 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 203733 36 100.0 38 .................................... TGGTTCAAGCATGAGCTTGACCGGCTGAAAGAAAAATT 203807 36 100.0 35 .................................... CTAGGACGCTGCGCTTCATCAGCCGAGGTATTCCT 203878 36 100.0 39 .................................... AGAAAGCCCTTAGCGCGATGCGGTCACAAGGATCATTAG 203953 36 97.2 37 ..........................C......... TCGAAACTCGATGTTGTCAAAATCATCAATATCGAAA 204026 36 100.0 38 .................................... TATGTGGCCTCGCTCCTTTCCGCGCCCCCGTCCCTGAC 204100 36 100.0 37 .................................... TCAGGCCAGTGATCGACCCGATGATTCCACCATTCGC 204173 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 99.6 38 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTATCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATGGGGCAACAATAATCACCCCCTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : TAAAACCCTCGGCGGTATTGAACTAGCCTCCAAAGGTGCCGTTTTACCGTGGCCTCTGATGGTCCAGTCTCTGACATAATCTCGCGACAGGTCAGAAGCCTGTCTTCTTCAATCCAAAATAACGCCATAAACAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAAAGAATCCATATCCAGCCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAAGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACGTGTTTACGAGCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTACACCTAGTCCTAAAAGAAACAGCGAAACCCAGCCCAGTCCAACGGTGGCAGTATCACCAGAAAACTTGAGTATGAGGATTCCTAGTACGCCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 283902-283081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESVL010000004.1 Corynebacterium ulcerans strain 20-SIC-1 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 283901 29 100.0 32 ............................. GCATCCATCCGCCACGACTGATTTGCACCACA 283840 29 100.0 31 ............................. AGGCAAAAACATGAGCTCCGAAAGCATATCC 283780 29 100.0 32 ............................. TTGACGGCTGGCTCAACAAGGGGATTATTTTG 283719 29 100.0 32 ............................. GGGTGCGCCTTTGGTTCATTTTCACGCTTTGC 283658 29 100.0 32 ............................. CATTGGTATTGAACCGATCCACGTAATACTGC 283597 29 100.0 32 ............................. TCTTCTTTCAGAGTGAATTCCCTACCATTTGC 283536 29 100.0 32 ............................. CATCCATTAAGCTATACGAGTAGCCTTGCGCT 283475 29 100.0 32 ............................. ACGGATACTCAACTATCCACCACTAGCAAACT 283414 29 100.0 32 ............................. CACAAGCGGAGGTGTCGGCGCTCACCCAGAAA 283353 29 100.0 32 ............................. CCCCACTCTCAACCAAGCTGGGATTTGAAATC 283292 29 96.6 32 A............................ CGCTACAAGACACACCACGCCGACCGCGATGT 283231 29 100.0 32 ............................. GGGTGGATGGCTCGATCACGGCTAGCCCACCA 283170 29 100.0 32 ............................. CATTGGTATTGAACCGATCCACGTAATACTGC 283109 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GGAACTACCTCCGCGTACGCGGAGAAAAG # Left flank : ATTCGCTTTCACTTTTGAATTTTCAAATAACCTGCACTCCCCCAATATGCGAGGGGGTGCGTAGTGCCCGGCGTGGGAATCGAACCCGCGAAAAACCGTTCAGGCTTTTATTTTTTAAAAGGTCGTGTATAGTAAGGATTGGTTTTGGCTAAGGCTCCGGTTGTGGTGACTGGGGCCTTTTCTTTTGCCCATTTCCCGCCAGTTGTTAAAGAAGTTCGTCCGCGGATTTCACAACACCATGCTTGACCAGTGTTTTTATCGTCGCAAAAACTTCGTTGATCTTGGTAGTCTTCACGGTGGTGTTATCACCTTCAGGCCACACCAGAGGGGCACTACGCTGCACAATCGCCTTATACCCAAAGGATTCAAGAAGATCAGCGCGGGCCTTAGCCCCAGAGCGTGATTGATAAAGTTTCGTAGTGGAAGGCTCAATAAAAACATTAGTATTGAACCGATCAATATAATCCTGCATCGGTATCCAGCCTTTAGGGACTACGCTT # Right flank : ACTAAATAACCTGCGCGTTTACTCACTCTCTGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAGGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAATATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGCGGGTGAATCAGAGTAAGGGATCCTGCTAGGTCTATGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGCTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGTCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGAAGATGTGGAGTGAGGATCTCCATCATAATGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCGTACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //