Array 1 382705-384320 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDUN01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain 1 NODE_2_length_618972_cov_21.3979, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 382705 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 382767 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 382828 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 382889 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 382950 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 383011 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 383072 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 383133 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 383194 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 383255 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 383316 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 383377 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 383438 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 383499 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 383560 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 383621 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 383682 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 383743 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 383805 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 383866 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 383927 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 383988 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 384049 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 384110 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 384171 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 384232 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 384293 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 400603-402500 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDUN01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain 1 NODE_2_length_618972_cov_21.3979, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 400603 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 400664 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 400725 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 400786 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 400848 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 400909 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 400970 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 401031 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 401092 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 401153 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 401214 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 401275 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 401336 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 401397 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 401458 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 401519 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 401580 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 401641 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 401702 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 401763 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 401821 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 401882 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 401943 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 402004 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 402065 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 402126 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 402187 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 402248 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 402349 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 402410 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 402471 29 93.1 0 A...........T................ | A [402497] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //