Array 1 205309-206004 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACWIW010000002.1 Streptococcus agalactiae strain 992 NODE_2_length_392939_cov_19.4192, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    205309	    36	 100.0	    30	....................................	TGTTTAACCGTGAGGAGCTAAAGCATATTC	
    205375	    36	 100.0	    30	....................................	AAAAACTCTTACCACTTACATACATGTATG	
    205441	    36	 100.0	    30	....................................	CATCTAATGCTGGTATGTTAGATACGATGG	
    205507	    36	 100.0	    30	....................................	GCTGGAGATTTTACAAGCAGTTTGAATTTC	
    205573	    36	 100.0	    30	....................................	TTTAAAGAGATATCTGTTTCATCTTGCGGA	
    205639	    36	  97.2	    30	..............T.....................	TTTAAAGAGATATCTGTTTCATCTTGCGGA	
    205705	    36	  97.2	    30	..............T.....................	AATCACTTCTGCATAAATATCTTTTACTTC	
    205771	    36	  97.2	    30	..............T.....................	AAACATCCGCAACGGGATAAATAAAGCTAG	
    205837	    36	 100.0	    30	....................................	GAACATGAAAGATTTTAAAAAAGAACATTT	
    205903	    36	 100.0	    30	....................................	AGAGGGGAAAATATCAATGCCGAATGCTGA	
    205969	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        11	    36	  99.2	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//