Array 1 165-550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPG010000017.1 Nocardia farcinica strain BJ06-0064 NODE_17_length_96680_cov_46.253850, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 165 28 100.0 33 ............................ CCGCCTGAAACCATCGCAGAGAGGATCGAGCGC 226 28 100.0 32 ............................ CTAGGCCACCTTGCGGACCCATCCAACCAACA 286 28 96.4 33 ........G................... CGGCGGACCAGCGAGCCCACCGAACTCCCTTGG 347 28 100.0 33 ............................ GGCGCGGAATCGGGTTACCAGCAGTGGATTTCA 408 28 100.0 33 ............................ GTAGACGCTGGCGACCGAGTGCCCGAATCCGGA 469 28 96.4 26 .............A.............. CTGGGTGGCGACGATGACCTCGGTAC Deletion [523] 523 28 92.9 0 ..........................AG | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.0 32 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : GCGTGAACTTCTCCTTCGTTGAGCTTGGCGGTTCAAGAAGGATCACGCGGTGACCGCCCACTTTCCGGCTACGACACGCTCACAAGCTGGCCGTCGCCGCTGGTACACCACTCTGACGGACGCAACCAGCCCCAGCCGCAGACGACGACCGCCGAGCAGGTCCGG # Right flank : GCCCCACGTGCCCGGCCCGACCGAGTCATACCTTCCGTGCTCCCGCCCGTGTGCGGGGGGGGGGGGTGAGCCCCGAAGCTAGTTGCCCGTGAGTGGGACCGACGCCTGAAACGAGCACTCGGTCGAAGACTGTCGCGACCCGAACCAATACGTTGTCGTCCACAACCGGCGGCGGCGAGACGCGAAAGGTCTTCGTTCATGCGGACTGCTGACTGGGCCGTGGGTCACCGCGATCGGGGATTCTCTGCGATGGGTCCGGTCGCAGCTCCGCGCGCAAAGGCCGGCGTGAGGGTTGCGCGCCGACCCACACCGGCTCGCGGTGGCGGCCGCGCCGACGTAGGTAACGACTGCATACACCTCACCCACGGAGATAGCTATCTGATTGCGGCGGGGCCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCAGGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107338-105224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPG010000012.1 Nocardia farcinica strain BJ06-0064 NODE_12_length_125964_cov_47.230211, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================ ================== 107337 28 96.4 33 ..........................A. CTCGTACGTCCGGGTGACATGAGAAAGCCCCTA 107276 28 100.0 32 ............................ CAGCGTGCTCCAGGGCGACAGCCACGGCGACG A [107250] 107215 28 100.0 32 ............................ CAGGTTTCGGCGCGCATGATCTCGCGCCACTC A [107189] 107154 28 100.0 33 ............................ CCCCAGCGGCTGGACGTGGCGGGTGTCGTTCCA 107093 28 100.0 33 ............................ CCGGTGGGACGTGCGGCCTGGTCGGCGATCTCG 107032 28 100.0 33 ............................ CAGGTTGTCCTGCACGGACTTGCGTACGTTCTC 106971 28 100.0 33 ............................ CAAGGAGATCGACTGGGACAGCGACACCATCAA 106910 28 100.0 33 ............................ CCCGTCGCGCAGGCTCGGCAGCTGCTGGTTCGC 106849 28 100.0 33 ............................ CACGCTCCTAGAAGCTGGCTACACGGTCGAATG 106788 28 100.0 33 ............................ CGGCAGTATCCCAGCGAAGCGGAATCACACGCA 106727 28 100.0 33 ............................ TCAGGGTACGTGCGTCGGCCATCTCTTGCCCAT 106666 28 100.0 33 ............................ CAGGTCGTGCATCGTTCTTCTTCTTTCTCTAGG 106605 28 100.0 33 ............................ CGCCCGCGGCCTGGACCTGAACCAGGTGTATGC 106544 28 100.0 33 ............................ CAGCGCGCTGTACACCGCGTCGCCGTCGTCGTC 106483 28 100.0 33 ............................ TTCCGACCGCATTGAAGGCGGGTTCGACGATGT 106422 28 100.0 44 ............................ CGGATGGATCACTGACTGTTCCGGCGCTGCCTCGGCACTGGCGA 106350 28 100.0 33 ............................ CTGGCCGAAGTACTCGAAACGGTCGGCGCCTGC 106289 28 100.0 33 ............................ CTTCACCGGACCGCTGTAGACCTCTCGCAGCGG 106228 28 100.0 33 ............................ CTCGGCCGGCGCGGTCGGCCCACAGGGGCCGCC 106167 28 100.0 34 ............................ CCGCTGCAACCCCTTCGGTGTCACCCGCGGCTGC 106105 28 100.0 33 ............................ CGGGACAGCTCCCCCATCGCCTCGGTGGTCAGG 106044 28 100.0 33 ............................ CTTGAACGTGAGGATCTGGTCGCCGGTCCTCTC 105983 28 100.0 33 ............................ CTCCTGCCTCCTGGGCACCTACGCTCGAGGCAT 105922 28 100.0 33 ............................ CATCGGCGAGGCGATGTCGTTCCACCACCAGGA 105861 28 100.0 33 ............................ CCGGACGAGGGATCGACCGGCCTGGTCGATCTG 105800 28 100.0 33 ............................ CACCCTGGGGACCTTGAGGTCCCGGGTATGTCC 105739 28 96.4 33 ..............C............. CGTCCGACAGATCGATGGCACGTTCGCCGAGGA 105678 28 96.4 33 ..............C............. CTCGATCAGGTCGACAATCGCGGAGACCGTCTC 105617 28 92.9 33 ......G.......C............. CCCGAGCAACATCGACCGGGGCCGTAACGGCCA 105556 28 96.4 33 ..............C............. CGCGCGCGTCGGCGAGATCCCGAAACCGGGGTT 105495 28 100.0 33 ............................ CCCTGCTTGTACCAGAGCGGTCACATTGGGGGC 105434 28 100.0 33 ............................ CATCGTGCGCTGGGCCGATCTGCCCAAGCAGTA 105373 28 100.0 33 ............................ CGGCTCCACGATCTGGAAGCGGCAGGACTTGGC 105312 28 96.4 33 .....T...................... CCGGGGCACTTGGGACCACGTGGATTCAGCCCG 105251 28 85.7 0 ..............C......GC...T. | ========== ====== ====== ====== ============================ ============================================ ================== 35 28 98.9 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCACTGCTGGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTACTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCCTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGCCTGCAACCGAGGTGCCTTCGTGCGTCCAGGGGTGCAGGTGGTGCACCTCCAGGACCGCGAGCGGGAACGAGGCTACGAGCTCCAACGGGCTCGTTGTGGGGGCTGTCGGAGCTCGCGGGGACTCCCGTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGATGAAGGAGATGTGATGTATCAGGAGGTGTATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGATAAGCCCGCGACTTGGTCGCGTTCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGGCGGGGCAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGTCCCGCGTCCTCGACCCTCGGGTGCGCACGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTTGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48951-49520 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPG010000033.1 Nocardia farcinica strain BJ06-0064 NODE_33_length_60699_cov_52.793584, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48951 28 100.0 33 ............................ CAGTGAACGCCCACACCCGCACCCGTGGCGCGG 49012 28 100.0 33 ............................ CCCGTTGTGGTAGACAAGGACTCGACTAGGGGG 49073 28 100.0 33 ............................ CGGTGTTTCGGGCACTGTTCCCGCGGGTGATGA 49134 28 100.0 33 ............................ CGACGAAGACCCGCTGGCTGCGGCGGGCCTGAC 49195 28 100.0 33 ............................ CGACGAGTACCTGACCCTCGCGCAGCTGCTCGG 49256 28 100.0 33 ............................ CCGGGCGGCGCGGACAAGCCCCCGCACATTCAA 49317 28 100.0 33 ............................ CGCGGCGGGCAGCTGTTGGCGCTGCACCTCGGC 49378 28 100.0 33 ............................ GTTCGAGGACCGCGTCGCAGCGGTCACCGAGGC 49439 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC Deletion [49493] 49493 27 85.7 0 ........A.T....A.....-...... | A [49501] ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.6 32 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : ACATGATGCGAAGAGCACGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATACGCAGGTGGCTTGTGTTTCCACGTTCCGAGAGTGCTAGGACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCAAGCGCACTCGACAGAGTGTCTGTCCGGTCGACATCTCCTGCGATTCTGACGGTGTGGGTCTGGGGCGAGTCCTTAACTGCATGCGTGTCCGAGCGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACCAACGTTTGTGGCAACTTATCGGGCGGGGCCTGGTCGATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACCGTGGGTTTCGGCTGAGAAACTGCAGGTCAGGAAGT # Right flank : CGCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGAGCGCGCGTCGTAAGGCACGTTGCACCAGCGACCGTGTGGAAAGTGGTTCGGCGGCTAGCGTGCTTGGATGCCCAAGGAGTGCCTGCGCCAGCGCGATCGGTGGACGAGATCGCGACTTCGGCAATGTCTCAGCGGCAGCATGTCTTAGATGCTGGGTGGGACGGACGAAAGCGGGGAAAAGGCGGGGTACTACCGCATGACACGCATTGCGCGCTTCCATGACTTGGATGTGGTCCGGGATGAGACGGGAAGTCTGAACACCAACCGCCGGCGATCAACAGCGACCCCGCCGCATCGCGGGTAACGACCGATTGTGGCGAGGAGGTTTTCGCTCGTAGTGCGAGGACCTCCCGCCCGAGATTGTGCGCCTGCTGGTATTCGGCCAGTCGAGGTGCCATCGGCCATTAGTGGACCATCACAAGCTAGGTGCTTAGCTTGTTCAGGGGTGGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50277-51174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPG010000033.1 Nocardia farcinica strain BJ06-0064 NODE_33_length_60699_cov_52.793584, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 50277 29 100.0 33 ............................. CCTACCCAGGAGAACCCCGATGCCCACCAAGAC 50339 29 100.0 32 ............................. CCCGCGGCGGCCGCGGCCCCGGTTCCTGGAAC 50400 29 100.0 32 ............................. CCGGCGAGGATTTGGACGCCGCGGCCGCCCGC 50461 29 100.0 32 ............................. TACCCCCGCGACGAAAACGGCCCGGAGAACGC 50522 29 100.0 32 ............................. GCGAGCATGAACTTGCCGGGGCGCGGGACGAC 50583 29 100.0 32 ............................. TGTCCCGGGAACACCCGTTTCACCAGCGCAAA 50644 29 100.0 32 ............................. AAGCGGGTGGCGAACGCGGTGGCGCTGTGCGA 50705 29 100.0 32 ............................. TCGTCGAGGCTGGCGACGTAGTGGTCGGGCAG 50766 29 100.0 32 ............................. TCCGCGCGCGCCGAATTCGCCAACCTCTACCG 50827 29 100.0 32 ............................. GACAGGGGAGACCTGTCCGGTGTCCGCACCGT 50888 29 100.0 32 ............................. GCCTGCACGAGTGCGGGAATCAGCGGCGCGAG 50949 29 100.0 32 ............................. GCTGCACGCCGCTGTGCACCAGAAGATCCCGT 51010 29 100.0 32 ............................. CGGCCGTCGTCCTCTCGGCCGAGCAGAATCAT 51071 29 96.6 47 .........................A... CCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTCGAC 51147 28 72.4 0 A..T....G..A..T..-C........A. | ========== ====== ====== ====== ============================= =============================================== ================== 15 29 97.9 33 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCGCGCTTCCATGACTTGGATGTGGTCCGGGATGAGACGGGAAGTCTGAACACCAACCGCCGGCGATCAACAGCGACCCCGCCGCATCGCGGGTAACGACCGATTGTGGCGAGGAGGTTTTCGCTCGTAGTGCGAGGACCTCCCGCCCGAGATTGTGCGCCTGCTGGTATTCGGCCAGTCGAGGTGCCATCGGCCATTAGTGGACCATCACAAGCTAGGTGCTTAGCTTGTTCAGGGGTGGCGTGCACGCGATGCACGTCCAGGCTCGCGAGTAGGAACGAGGCTACGACCGTGAACGGGTCAACAGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGTTAAGGCGGGACAACGGAGATGTGATGTATCAGGAGGTGGATTGCGGCGCGTGCGTCGGGTGAAAGTGAATGAAAACCGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGATCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACGCCACCGCGCCGCGTGTGCCCCACGCGTGCGGGCAGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTAACGCTTGCTACCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAACCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACCGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGGCATCTCGCTGATTCGGGTGAGGTCGCGAAGTTGGTCTGGGACCGGTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 60358-60568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPG010000033.1 Nocardia farcinica strain BJ06-0064 NODE_33_length_60699_cov_52.793584, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 60358 28 100.0 33 ............................ CGCGGTGACCTCACCGGCGACGATGGCGCGCCA 60419 28 100.0 33 ............................ CTCATCCACCACCATCAGCGACGTGCGGCCGTG 60480 28 100.0 33 ............................ CGACGCGATGGCCCTTCTCGAGCAGGAAGGGTT 60541 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 36 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTTGTACAGCGACGAGGATGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATCCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCAGGGTCAAGTCCATTGGTGTGGTGTAAGTGGAGCGGTCACCGCTGATCCGTTTGTTGGTCAGGCGGTGAGTTGTGCGGGAGTCGTTTCCTCCTGTTCGTCGGGTTCGGTGATGGCGCGGGCCCGGGTGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10909-11181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPG010000034.1 Nocardia farcinica strain BJ06-0064 NODE_34_length_59114_cov_51.773408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10909 29 79.3 32 A.GAT......GT................ GGCAACTCGACATCGATCCGCTCACCGCCAGC 10970 29 100.0 32 ............................. GTCGCGCTCGGGCTGTACGAGTACAGCCGCCG 11031 29 100.0 32 ............................. GCCACGGCGTCGGCCCATTCCTCGGGTCGGTG 11092 29 100.0 32 ............................. ACCGAACGCATGTGTGCCGCCGCCGTGATCGC 11153 29 86.2 0 ..............T.......GA....G | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.1 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : CACGCGGCCGGTGCCGTGACGGCATACACTCCGAGCCCGGTGGTGGTCTGGTCGAGTTTCCAGTTGCCTAAGGCGCCAGAGGTGGGTTGTTGGTTGAGGACCACGAGCGCGGCGTCACAGTCGGCGGCACGAACGAAGTCTGTGATCAGCCGCCGCGCTCCGGCGACGGCATCGAGGTTGGTAAATCGGGTGATGCGGGCTCGGGCGACGGTCAACACCTTCCGACCCGATCCATCGTTCGGTCAACGGAGAACGAGTAGCGGGTACCAGGGTATTTGGCAGCGACCGGGCTGCCTGCCACACCCCTCCAGCGAGGGATGATCCCCGCGTGCGCGGGGCCGACAGGTTCGGGCGCAGCAGTGCCGAGCTCGCGCAGGGATGATCCCCGCGTGCGCGGGGCCGACTGATCGAGGAAGCGAAGGCCGTCGAGGCGCTGGGGATGATCCCCGCGTGCGCGGGGCCGACCATTACACGGAAGATAATTGAGATGGGGCGATTGG # Right flank : GTGGCAAACCGGCGATCTCGGCCCAGCTTCGGGTTAGGCACGAGCATCACTGACTGAGCGGCCGAAGCAGGGCTGATTCCGCCGCGCAGCGGCCAGCCGACCGCCAACGAGGCATTGAGCCTCCCCCGCATCGCCCTCGAAGGCAGCAACCAGACCGAGAACCGAACGGGCGACAGCCGCATACGTTTTCAGCCCCAACGCGGAGCGGATATGGTGCGTCGCGGCTGCACTCGAGGCCGGCATGGTCGGCATCAACTCAGGCCTGATCCCCAACGAGACAGCGCCGTTCGGCCGCATCAAGCAATCCGGCCTCGGCCGGGGGGTCGATCAATGGACCATTCGCAGCACGACGGCAGGACCGACGTCCCGTCTCTCCAGCTGCGTTTGTGCTGCACCGATGTATACTCCGAGTGTCTCGAGTGAGGTTGTGCTGACGCGGGATGAGCAACGGGGGGTTGAACGTGCCAGATCCGTCGACTTCGCTGACAGTGACCCCAGCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 186681-187438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPG010000003.1 Nocardia farcinica strain BJ06-0064 NODE_3_length_303535_cov_48.394057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 186681 29 93.1 32 .....A........T.............. GGCTCCTGATGTCCACCACGGGCACGGTCGAT 186742 29 96.6 32 ..............T.............. TGGCAGGCTCTGCGCAATGCCGGCCACAGCTA 186803 29 96.6 32 ..............T.............. TGCTTGTCGGTGAACACTGCCACGACCACTGC 186864 29 100.0 32 ............................. AACCCGGATCAGCGGCACTTCTACAAGTCGGA 186925 29 100.0 32 ............................. ATCGAGAAGCTCACCGTCGCGACGCTGAGCAT 186986 29 93.1 32 ...........T................A CGCGGCATCGGCGTTCAGGGTCAGACGGAGTG 187047 29 96.6 32 .......................A..... CGGTGTAGCGGCGGCCGCGCTCGGCGTCGTCG 187108 29 100.0 32 ............................. AGCAAGTCCTCGCCGACCTGGAAACCGATCTG 187169 28 93.1 32 ..............-.............T GCCGTCCCGCAGGACTCGGTTTTCGTGGATCG 187229 29 100.0 32 ............................. CGGTGTCGGTCACCAGCTATCAGAAGGCTCGC 187290 29 96.6 31 ..........................T.. AGTCATGAGCCGCCGCCGGGTCCGGTGTCCA T [187316] 187351 29 93.1 31 ...A..................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGCA 187411 28 79.3 0 ....CT.......-G.GA........... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 95.2 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGAGGGCGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCATGGGTCGTCGCCGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGCCCCTTGGGAAGATCGCCGGCAACTGAAATGGGATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTGCAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CGAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCGCATGCAGGGAATGTAGCGGTTGACGCCGGTAACCCGGAGGCCGGTTTCCTCTTCGACGTCGTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATAAAGTCGTTGCCGGGTGGGCGCAGCAGCAGGATGCGGCCGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGCGCTCTTCGAGGCGGGTCGGCATCAGGTTCATCCTTTTCGCCCGGAAGGAGCCGCCGACTGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAGTTCCTCTGGGGTGACGCCGAGTTCTGTGAGTATCGCGCGCAGTTCTGCGAAGGCTTGGGGGAGGTCGGGTTCTTCGGCGTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 194632-195271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPG010000003.1 Nocardia farcinica strain BJ06-0064 NODE_3_length_303535_cov_48.394057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 194632 29 100.0 33 ............................. TCGAACGTGGTGTCGCTCATGCGGATTTGCCTT 194694 29 100.0 32 ............................. GCAATGGACGCGCGTAGCCGTGCACCTCACAT 194755 29 100.0 32 ............................. GAGGACTTCCTCGCGCGCAGCCGCTACAACGA 194816 29 100.0 32 ............................. ACAAGATCCAGCTGCGAGCCGTCGACCGTGGT 194877 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 194938 29 100.0 32 ............................. CCGTACCACCACACCGGGACGTCGCCGCGATT 194999 29 100.0 32 ............................. GTGTCGAAGGTCTTGACGTGGAGACGGACCCA 195060 29 100.0 32 ............................. TCGAAGTTGTACTGCAGCACGGTCGCGATACC 195121 29 100.0 32 ............................. TCGCCTCTGGAGCCTGGCACGAAACGCTCGGC 195182 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 195243 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.4 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGACAACCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCTGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCGACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : CTGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGACTGGGGCGCCACCTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGCGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //