Array 1 8446-7320 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKW01000053.1 Salmonella enterica subsp. enterica serovar Braenderup strain CVM N48701 N48701_contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8445 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 8384 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 8323 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 8262 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 8201 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 8140 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 8079 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 8018 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 7957 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 7896 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 7835 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 7774 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 7713 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 7652 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 7591 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 7530 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 7469 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 7408 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 7347 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108436-106329 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKW01000018.1 Salmonella enterica subsp. enterica serovar Braenderup strain CVM N48701 N48701_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108435 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 108374 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 108313 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 108252 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 108190 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 108129 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 108068 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 108007 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 107946 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 107885 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 107824 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 107763 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 107702 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 107641 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 107580 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 107519 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 107457 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 107396 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 107334 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 107273 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 107212 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 107151 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 107090 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 107029 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 106968 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 106907 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 106846 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 106785 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 106724 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 106663 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 106602 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 106541 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 106480 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 106419 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 106358 29 89.7 0 A...........TC............... | A [106331] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //