Array 1 912750-913560 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014855.1 Escherichia albertii strain NIAH_Bird_3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 912750 28 100.0 32 ............................ TTCAATGCGCGCATGTTCGGCGTAATCCATGC 912810 28 100.0 33 ............................ CACTCCGGAGGAAGCTTTCAGCATTGTGTTTCA 912871 28 100.0 32 ............................ TCCCGGAGAGGTCGCCACCTGTAACGGCAACT 912931 28 100.0 32 ............................ GGCTGGCGGGCAGGGTTTGATTACCTGATGAA 912991 28 100.0 32 ............................ TGTCACACAGAGAAGCCGCCTCCCAGAGAGGT 913051 28 100.0 32 ............................ TCCAGTTTTTCGAAAACTTCCCACGCCTGATC 913111 28 100.0 32 ............................ AGCAGGCCGTTTTCAATCCAGCGGCGGATCGT 913171 28 100.0 32 ............................ GAAAGCAGGCTCAGTAAACAACAGATAACAGC 913231 28 100.0 32 ............................ GGATAACTCCAGCGTCAGTAAAGGATCAATTT 913291 28 100.0 33 ............................ GCCCGATATTAGCGAAACATTACGAGAAAATAA 913352 28 100.0 32 ............................ TTTTTCGGTAGCGACCTGTGGCGCTATATCGA 913412 28 100.0 32 ............................ ATAAGCGTTAACCGAGCGTATCCAGTAGTAAT 913472 28 100.0 32 ............................ TTTCAACGGACTTGCCATTATTCCCTTCAAGC 913532 28 96.4 0 ........................C... | C [913555] ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGCGTGTGATTCAGGATAACCTGAAAAAACCGCTCGCCAACGAGCTGCTGTTTGGCTCGCTGGTGGATGGCGGCCAGGTGACCGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGCTTCCAAAGTGCGCAAAAGCATAAACCGGAAGCCGCGCATTAATCTGATGGCGAAAAAAATGCCTGATGCGCTGCGCTTATCAGGCCTACAAGGTTCGTGCAATCTATTGAATTTGCATGATTTTGTAGATTGGGTAAGGTGAATGTGCCGCATTCGACATAAACAAATCGCACGTTGTTAACAATCTGAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTTGCGCTTCGACGGAGCAGATGTGACCCTTTTTTGCGGGGGTGACGTAATTTATTGATAAAACTATGCGCAGGGATGTAGGGATAAAAAAGGGTCTGAGCGGGGGAGTATTGATAGTTTCGCTTTATTAACAACGGGCTAAGCGTGTAGTATCTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACTCCGAACCATTAACTGTGGTGCACAATAACAATTGTGATAATTGCGATAAAAATCAATTTCTCACACAGAAATCAATGCTGTACTAACCCAACGCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACTCCATCTGACCTCAAAACCATTCTCCACTCTAAACGAGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGTGAGGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACAGCGTTGATGCTGGGAATGGGGACATCCGTGACTCAGGCGGCAATGCGTGAATTTGCTCATGCCGGGGTGATGGTGGGCTTTTGTGGTACTGATGGCACGCCGCTATATTCGGCAAATGAAGTGGATGTCGATGTCTCCTGGCTCAGTCCACAAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 928001-928389 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014855.1 Escherichia albertii strain NIAH_Bird_3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 928001 28 100.0 32 ............................ ATTTCAAGACGGATAAAACTTCTCTGGAAGGC 928061 28 100.0 32 ............................ CCTACGACCACCACCGCGTATCACTCGACAGC 928121 28 100.0 32 ............................ TTACCCAGCGATACCGGGCTACCAACCACCAC 928181 28 100.0 32 ............................ GCCCATTTGCGGCTATCACGCACGTTTGTAGA 928241 28 100.0 32 ............................ AACCAGTGTGGAGCAGTTCTTCCGTCGAAACG 928301 28 100.0 33 ............................ ATGTTGCATGATAGGTCTTGCAAGGTCAGTGAA 928362 28 85.7 0 ...........C........T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCCCCCCCCCGGATGTGTGCAACATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATCGATTGATTCGTTTGGTTACGCAATGAACACACTATTTGCGTGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAGAAGTACCAGATTGCCCCTTTTTTAAGTTGAAATGTAACTTATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACGGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACACAACACTCCATACTCCAATATTTATTCCCCATAACTCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTATTCGTTCTTTCTCTTCGCCCGTCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCCAGTACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCATAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAAATCGCAACAAACAGGTTTTGCACATAACTCCGAAAACACACGGCTAAGCCGCACCATAAGCGCAACATATAAGGGAGCGGTGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2696277-2695513 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014855.1 Escherichia albertii strain NIAH_Bird_3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2696276 29 100.0 32 ............................. GGCGGCCTGGTGGGTAACGTTGATATCCCGAA 2696215 29 100.0 32 ............................. TTCATTTATTTTGTCCATAACTCACCATGAAA 2696154 29 100.0 32 ............................. GCCACCATCACACAGCTCAGGGGGAATACGCT 2696093 29 100.0 32 ............................. CTTTTCTTCGGAGGCAGAATGGAATCGAGATC 2696032 29 100.0 32 ............................. CGTATCCAGGATGTAATCACCACTGAATCCAA 2695971 29 100.0 32 ............................. AACGGGATAAGGTTAACGTTGACCTGGCTGCC 2695910 29 100.0 32 ............................. TCTGTTACATCCCCAACGGGGGCGCAGTGGCA 2695849 29 100.0 32 ............................. GAGTGACCACGGTGGCAAAAATATCAGGAACT 2695788 29 100.0 33 ............................. TCGGCGGTGTTCCCCCCTCCCAAACCATTAAGC 2695726 29 96.6 32 ............C................ GCAATACTGGCCTGACCACCGTTCACCATTGG 2695665 29 93.1 32 ...........AC................ CCCGACAGGGCATAGAAGGGGCGAAAGAAAAT 2695604 29 96.6 32 ............C................ GGAGAAAAATCACGGCACAGAAGAAGAGTTAC 2695543 29 79.3 0 ............C..A........TCTG. | A,C [2695515,2695524] ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCCGCGCCGGATATGTTACCCCCTGCAATTCCTGAACCTGAAACATTAGGCGATAGCGGTCACCGGGGGCGCGGTGGATGAGTATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTTCGCGCAGGTGTATATGTCGGAGATACGTCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCACTCAACTGGCTGGTTGTGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGGTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTAGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATGAGTTACCCGTTATTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CTTCTATTTTCAAACTCATCAAGACGCCTTCGCCAGTTCCTTCACCAGTGGCAGCATTATCCGCATAATGTCACGGCAGCGACGTTCTATTCTTCCTGGAAGCGCCTTATCAATATGTTGTTGATTATCCAGCCTTACATCATGCCAGCTATTTCCCTTCGGGAACGCTGCTGTTTTTGCGCGTTGTTGATAGCCGTCTTTATTTCCAAGACTCCAGTTTGTTGCTTCAACGGAAAGTACAACAATACCCGCTTTGTCGAAAACTTCAGCATCATTACAACATCCCGTGCCTTTCGGATAATTTTTATTCAGACCTGGATTTGTGGCGGCGGCAATTCCATGGCTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCCGGGGTGTTTACGCCGCTATTGAAATACAGCTTATCGCCTACAATCAGGTTATCGAGATTAATAACCAGTAGAGTATTTTTCTTTTCGGCTTCACTCATTCGCTTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //