Array 1 11182-12136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWA010000045.1 Aggregatibacter actinomycetemcomitans strain RhAa3 730, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 11182 33 100.0 33 ................................. TTTTCCATTTTTATCAATATGACTATAAATATA 11248 33 97.0 32 A................................ AATATTCCTTATGAAATGCAAACTTACCCACA 11313 33 93.9 32 A...............................C AGATATTGTTACAGTTAAAAATGATAATGATG 11378 33 100.0 33 ................................. TAAATCTATATGAAACATTAGGTCAAAATGAAC 11444 33 97.0 32 ................................A ATAAAACTATTTATCGTTATGGATGGTTTTCA 11509 33 93.9 32 A...............................A CGCCATGAACCCCGCGCATATCTTAGTTGAGT 11574 33 97.0 32 ................................A ACATCAAATACTTGTTGGAAACAACTTGGTAG 11639 33 93.9 33 A...............................C GTATCTATGATCTCAAGAGGGGCAATAAATTTA 11705 33 100.0 32 ................................. CCGATATTGGTTTGAGACAACTCAATAGTATA 11770 33 90.9 34 A....................T..........G GCACCAACACGGGTGCGATGTTAGACCGCTCTGT 11837 33 93.9 34 .....................T..........A ATTCCTCGTCTTACTTGGTCGTCATATTCCGCAA 11904 33 93.9 35 .....................T..........A AAAAAGTGCTCGAGAATCACAATTGAGCATAGAGG 11972 33 87.9 33 ............G........T.......G..A TAGTCTGTACGAATATCTTTTTTATCTGCCATA 12038 33 81.8 33 ....TT......G........T..A.......A CATAACCTATTGAGTCCATCGCAGGCCTTGGCG 12104 33 75.8 0 .....T..T...G....A..AT...C.....T. | ========== ====== ====== ====== ================================= =================================== ================== 15 33 93.1 33 GCAGCCACCTTCAGGTGGCTGAGTGTTGAAACT # Left flank : AATTACCGCACCAATGGCATTAAAAGCCTTTAAGCGGTATCAAGACGAGGGGCATTTAGAAAAGCTCAAACGAACGATTCAGAAACATAATGAGATTATGACTTATGCTCTACACCGAGATCTGATTCCGTTTAATCCTACGGTGAACATTGCAAAAGAATTTGATAGCCTTACGGTGGAAAATTTCAAGACGCTTAAGCCCGAGGATTTAAGCGAATCACAGTGACATTTTCTATTTATGGAATATTGTTGGAGCTACCGTTTTTTATAGTATTAACGGCATATCTTTAACGATGTGCTTGTTGTCTAGCTCGCTAACCCCTGGTTCTCATCAAATTCCTGCTGAGCTAGCGATCCTTGTTTTCTTTAACAATTTGGAATAGTTAATTCATTTGTATAACGACGATATGCCCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGTAAGTAATCTACTGATTTTTCTTATTTTTTCATATAGGG # Right flank : TACTTGGTATACGCTTTTTATGAGCATTTAATCGGTTAAAAATATATGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAACGCTCTGTGCGAGTTCGATACTCGCCAAGCTCACTATTTATTGCCCTGCACAATTTTATGTAATCCTTTCTCAATTTTATTCACCATACGGGTAATCTCCAAAAAACACCTCTAAAATCGACCGCACTTTTCCCCATAAATAAAAAAGCTGAATCTCTCTCGAAATCCAGCTTTTCTTTTACCTATTTATTACGCTAATTCAGCACGTAATTTTTTCGTGACGTCAACCATGACTTTCAGTTGTTCTAGGGTTTCTTTCCAGCCGCGAGTTTTTAGACCGCAGTCCGGGTTGACCCATAGGCGTTCTTTCGGTACCACTTGGAGCGCTTTGCGGAGCAAGTGTTCGATTTCGGCAGCGGTTGGGACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCTATGTCGTTCGGGTAT # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCAGGTGGCTGAGTGTTGAAACT # Alternate repeat : CAGCCACCTTCAGGTGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24118-22234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWA010000033.1 Aggregatibacter actinomycetemcomitans strain RhAa3 714, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24117 36 97.2 30 ..........................C......... GCCAAGTATGTGAAGGACAAGGTGGAGTGA 24051 36 100.0 30 .................................... TATATTGCGTAATTTCAACGGTCATAAAAT 23985 36 100.0 30 .................................... TAGATATGAAGACAGGAAAATCTTCAGGTA 23919 36 100.0 30 .................................... CGGCTTACCGTTCTGTAATTCATTGTTTTT 23853 36 100.0 30 .................................... ACTATGCCTTGTATTAATAACATATTTAAA 23787 36 100.0 30 .................................... TCTGTAGATTGGAGTAAGCGCACAAATGAG 23721 36 100.0 30 .................................... TATATTGCGTAATTTCAACGGTCATAAAAT 23655 36 100.0 30 .................................... ACTTCTTGGCATAGCCATTGTCCTTCTTCG 23589 36 100.0 30 .................................... TTTTACAAAATGCACAAGCGCAAGTTCAAC 23523 36 100.0 30 .................................... GCCACGCCAAGAGATCATCCATTTCTTGCG 23457 36 100.0 30 .................................... CACATCAATTGTTTTCTTGTTAAAGATAGG 23391 36 100.0 30 .................................... ACAAGGCTGAATCCATGTTGTATGATATAG 23325 36 100.0 30 .................................... AAAAATGCGCAGGATGCCCACCGATTGCGG 23259 36 100.0 30 .................................... ATTACTGGCGATAACCGTCTTGTTACTGAA 23193 36 100.0 30 .................................... ATTACTGGCGATAACCGTCTTGTTACTGAA 23127 36 100.0 30 .................................... TCTGCTCGTCATCAGCTAGACGTACTCTAT 23061 36 100.0 30 .................................... AGGTATTAGCAGAATTTAAGGAATCCAAGA 22995 36 100.0 30 .................................... GCGAAGGCTTGGCAAAAGCACCGAGCCAAT 22929 36 100.0 30 .................................... CCTCTGCCGCGCCTTAACCCGTTGGTACGG 22863 36 100.0 30 .................................... GGATTTTTGCATAACTTTAGGCTTTAGTCG 22797 36 100.0 30 .................................... CTTCGATGTCGTCATTATCGATGAGGTCTC 22731 36 100.0 30 .................................... TTCCGCCTGTAACTAATTCGGCATAAGTAA 22665 36 100.0 30 .................................... GCATCTTGCATAATGCCATCACTATAATCA 22599 36 100.0 30 .................................... TTGCCAGTGCGGCGTTGTTGATTCTGTCAC 22533 36 100.0 30 .................................... CTACCACGCCGTGCATTCTCACGGCGGCTT 22467 36 100.0 30 .................................... GGAGGGAATTAGTTTAAGAGACGCAATAGA 22401 36 100.0 30 .................................... TTAAAAAGAAAATTAAACGGGGCTCGCAGG 22335 36 100.0 30 .................................... ATGAACCCCGCGCATATCTTAGTTGAGTGC 22269 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.9 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CATGAAAGGTCATCGCGATTACAACTTCAAACACAGCACGGGCGACGGAAAAACCGGTATCGGCAGATATGAAAAAATCGAGCGTTTCGATTTAGATTTTAAAGTACAAGCCACCGAGAAAAATGCCATTTATGGTGCTTATTTATGGAGAAGCGGTAAAAATGAAGGACTGGCGCACAGCAAGGCGAGAGGTTGGGTGCTTGGTATCGACCATAAATTCAACAAACACGTTGCCGTTTACCTTGAAAGCGGTAAAGCGCGCGTGAAAGAAAACGGCAGAAAAGTGGCGGAAGGCACACGTGTCGGTTTAGGTACCCGTATTACATTCTAATTTTATTCAAACAACAATACTGTCTTTTTTGGCCGATGACGCGGGTCATCGGTATTTTTGCGTTTCTTCGCCCGCATTTAAAAAACGTCGTCAAAATCCACCGCACTTTTGTGTTAAAATCATTTCGCAGTGCTACAATAAAGGATTAAAACCATGTCCGAACAAACCG # Right flank : CTCGATGGCTCCAAGCCTTATTTTTTCAAGGTTTGGCATCGTTTTTACATTAATAAAAATGCTGAATAATTACGACTTTTACGTAATCATTCAGCATTTTTTCTTTTCAATTTAATTGAAAAAATAACCGCACTTTTGACTAGAAAGTGTTCTATTCGACTTATTTTTCTTTAATGAACAGCTCAATAAATAAACATTCAAACATTTTATTTGTATATTTTTTCAGCGCTTGAACAATCAGTTTAATTAAAATAGTAGTAATTGGTTCGCATTAACTTTCTTCTCTTGAATTTTTACCTCACCAACCAAAATGGACATTCCCGCATATTGTTTTTCCGTTACTTCAAGGCAACGGATAGAGCCATTTTCCGGAAGATTCTGAGATAAACGCCTATTATGCTTTTCTAAAGCATCTCTACCTCGAATTAATCTTCCATATACTGAAAGTTGCAGCATTTGATAGCCATCTTTTAGTAGAAATTGACGAAATTTATTTGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 42306-43661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWA010000033.1 Aggregatibacter actinomycetemcomitans strain RhAa3 714, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 42306 33 100.0 33 ................................. AAAATTATGTGGTTTAACACTAGATAGCGCTAC 42372 33 97.0 33 ................................G GCTGCATAAAACCGCCAGATTGCTCTGACGGTT 42438 33 97.0 33 ................................C GCCACCGATAGGCACGCGCATATATTCCGCCAC 42504 33 100.0 33 ................................. TCAGCTCAACTAAGAGCGAGTTTGTGCGCTTTA 42570 33 97.0 33 ................................A ACTTTTTTGGCGTCCGGGTATGCAAATTCCGTG 42636 33 97.0 33 ................................G CTTGGCAGATGCCGCAGGCGCGTATCAAACAAC 42702 33 97.0 33 ................................A ACTGCATAATGTAGATCCGAATCACATTATAAA 42768 33 97.0 34 ................................A ACGCTGCGATCTCTCAAATCGATCCATTTTGCCG 42835 33 97.0 33 ................................C ATGCGCCCCTGGATGCCGCCCTCACCACCGGTG 42901 33 100.0 32 ................................. TTATAAATTCATCACTTAATTTCTTTAACTTT 42966 33 100.0 33 ................................. CCAAAGGAGGGTAAATCTCAATCAGAAGCCGAC 43032 33 97.0 34 ................................A TACGGTGACTACCATTAAAAATTTTCATCGCCAA 43099 33 100.0 33 ................................. CCAAAATTGGACAATGAGAATCTATTGTATAAG 43165 33 97.0 33 ................................C ATCCATTTAAACTTACCATCTTTGGAGAATACT 43231 33 93.9 34 ...........................T....C AAAACGTCATGCTTATATCAATACCTATATGAAT 43298 33 100.0 33 ................................. TGTTTGTCAACAAGAATAATAAAACTTTGATTG 43364 33 97.0 34 ................................C CTAACGTATGGGAGTTATCATTAGCTAACAATGC 43431 33 100.0 33 ................................. CATTTTTAAGCTTAAATCTATTTTTATTAACAT 43497 33 97.0 33 ................................C AGGCAACAAGTGCACCGATGATAATTCCAATAA 43563 33 100.0 33 ................................. GGTGATGAATTACGCACTAAAATTGGTTTGGAA 43629 33 93.9 0 .......................C........G | ========== ====== ====== ====== ================================= ================================== ================== 21 33 97.8 33 GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACT # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGGAGACTCGGAGGGGCAAGCCAGGTTGCGCCGTATTGCGAAGCATTGCTTGGATTATGGCGTACGGGCGCAGTATTCGGTGTTTGAATGTGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTAGCGACTTATGATCCGGATTGTGATAGTTTGCGCTTTTACCATCTAGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGGGCGAAGCCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCCTGGTTCTCATCAAATTCCTGCTGAGCTAGCGATCCTTGTTTTCTTTAACAATTTGGAATAGTTAATTCATTTGTATAACGACGATATGCCCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTACTGATTTTTCTTATTTTTTCATATAGGGA # Right flank : GGGGACTCTGTTACATCTGAACTCTGATACCAACTAAACTAAGCGCCTTATAAAAATAAGGTGCTTTTCTTTTCCCGCATACCAATACAAAACTCCTTGCCCTTCCTCCACAAAATATATAGACTGAGTTCCATTATTAGTCGGGGTGCTTTATGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGGCGTAGGAAACTAACAGAGAATCATATTTCCTTTCTTTTTCTCTTCTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTCATTGAAAAGGAAAAATTATGCAATATGGTTTTTGTCGCCCTGTGCCGGTAAATGGCGGAGGGCATTATGAGTAAGGTTGCGAGCGTTGACTATCTCCGGTTAGGGCAGCGGCGGCGGTGCCGGGATTGAGGCGGATTTGACGATGTTCCAAATGCATGTCGTTTGGTTCATCGGTGACCGTGCAAAATACCTTGAACGTGGTTGATATTTATGCCGTGTCACGC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //