Array 1 214071-211967 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVX01000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU1318 NODE_4_length_276855_cov_47.752, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 214070 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 214009 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 213948 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 213887 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 213826 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 213765 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 213704 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 213643 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 213582 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 213521 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 213460 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 213399 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 213338 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 213277 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 213216 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 213155 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 213094 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 213033 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 212972 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 212911 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 212850 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 212789 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 212728 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 212667 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 212606 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 212545 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 212484 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 212423 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 212362 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 212301 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 212240 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 212179 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 212118 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 212057 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 211996 29 96.6 0 ............T................ | A [211969] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232081-230833 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVX01000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU1318 NODE_4_length_276855_cov_47.752, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232080 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 232019 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 231958 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 231897 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 231836 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 231775 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 231714 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 231653 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 231592 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 231531 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 231470 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 231409 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 231348 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 231287 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 231226 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 231165 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 231104 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 231043 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 230982 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 230921 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 230860 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //