Array 1 252729-253550 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJQFR020000001.1 Salmonella enterica subsp. enterica serovar London strain PS121 isolate PS121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 252729 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 252790 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 252851 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 252912 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 252973 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 253035 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 253096 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 253157 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 253218 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 253279 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 253340 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 253401 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 253462 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 253523 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 269683-271531 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJQFR020000001.1 Salmonella enterica subsp. enterica serovar London strain PS121 isolate PS121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 269683 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 269744 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 269805 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 269866 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 269927 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 269988 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 270050 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 270111 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 270178 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 270239 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 270300 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 270361 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 270422 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 270483 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 270544 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 270605 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 270666 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 270727 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 270788 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 270850 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 270953 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 271014 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 271075 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 271136 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 271197 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 271258 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 271319 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 271380 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 271441 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 271502 29 96.6 0 A............................ | A [271528] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGCCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //