Array 1 790292-790468 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067336.1 Actinomyces sp. HMT897 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 790292 32 100.0 42 ................................ GGGTCGAGGCCAAGGCCACCACCATCCTGGGGTGGCTGTCTT 790366 32 100.0 39 ................................ CCGCCTTTGTGCCGGCTCCCGGTGTTACCGAGGGGTCTT 790437 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================== ================== 3 32 100.0 41 AATGCACCTAGCGGTGCGGGGTGCTCCCTGAC # Left flank : CCACGCACCCGCGCCTCGCCGCTCGCCCTGGGGCCCGTCCCGCCCTGTACCTAGGGTGAGGACAGGAGGTTATGCGCGGCCCCGGCGGTGGTGGGCGGACGGTTCTGTCGCAATCTGAGGATCAGGGCCGGGTCCACTCTGTTTTCATCTTTGTGCACCCAATGTCCACGCAGGTCAGGAGCTTGGACCTCGACGCGGCCGAGGGTGACCCTCGTTCTGATCCTCAGATTGCGACACACGCACGGAACCGGGCCAGCAGACAAGCGGCAGGTTATCCAAAGCATTGTATAAGACCACCCGGGTCCATGCCACGAGAACACGATAGACGCCCCACCGGCCGGGCCAACGTCACGAAAGGCAGGGGATTTCCGTCCCGCAGTCAGTCTCGCCCCATTCACGCGCTAATTACCATAGCGCGAACGGGACAGAACCGCATACGAGGTGTGGGACACTCCCAGACATGCCGCCCCTCCACCCCGGCGGCTCCTGCCGAGGCCATC # Right flank : CCCTGCTCCTGGGAGGCGCGTGGTTGCAACGTTTCCAGGGGCTGGATCGCCACCGGCCTGTGGAGGCCCTTCCGGAGGTGGTCGGAACGGGTCCATTTCTACCACCTTTCGTTGGTATGACGCCACTCGCCACCGACGGCCCTGGGAGCGGATCCGGCGCCGGCTTTGGACGAGACCATGCGGAAAAGTGGCAGTCAGACAGGGTGTCCCGTACCACAGTGATGGTGACCAACGTCACAAGTTCGGCTGGCCTCGACCCCGCGAGCACCCGCACCGCGCCCCCTTCCCTCACCAGATCCCCTCCGGCACAGGCCCCCGTCGTCGAGCACGGGCACCGCACCACCCACCCACGCCCGTCCCGCACAGGACACGCATCTTCCCGTACCCGACCCGCCAGGGGGCGGATCCCCACCCCTCCCACACAGGATGCGCACAACAAAACGGACCACGTCATTGGACTCCTCAGCACAACACCAGAACAAACCCTCATCGTGAACCCA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATGCACCTAGCGGTGCGGGGTGCTCCCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 1296699-1297101 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067336.1 Actinomyces sp. HMT897 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1296699 37 100.0 35 ..................................... CTGATGTTTCTGTCGCGTTGGGCATTGATCTTCTC 1296771 37 100.0 38 ..................................... GTACTTGTAGACGGGGACAAACCGGGGCTTGCGCCCCG 1296846 37 100.0 35 ..................................... CAGAACCCAACGGCCTGCCAAAATGACAGGTGAGG 1296918 37 100.0 37 ..................................... GGAATGGACAATTCGGCGACGTCGACAACAATGTGGT 1296992 37 100.0 35 ..................................... CAGGTGAACTTGGACAGCTCCTCGTACTGCGAGGG 1297064 36 81.1 0 ......................A....-T...CT.GG | T,G [1297067,1297086] ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 96.9 36 GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Left flank : CGACTCACGGCCGAGGAGGTGTCCGAGGGCTGCGACTTTCGTGATAGATGGCGCCCTCTTTCCCTGAATCGCCTTCCCGATGGAGATCTCGTCCGGGTTTGCCGGAATGGTCGGAGGATCGCGTTCGTTCCGGTCGGGGCTCGGGGCCGGGCTCGTTTGGGCCCGGGTGTCCACGTCGGGTCCGGTCGGTGTGCAGGGGTGTCCTCGGCGGGGCCGACCCGGTTGGTGCTGGAGGTGCTGTTGTGGCTGGTGGGGCGGTATAGTGAACAGGGTGTCATGTTACATGTTTGCAAGATGGTGCTCCGACACCGACTTTTCCGCATGACCTGGTTGAAAGTTGGCGCGCGGAGGGCTCTGAGGGCCGTCGATGGCGCTTGGCGTGATTCCGCCACTATGTGCTAGTCTGAGCCCGGTGCTGGCCGGTCCGCAGGGGTGCTCCCGGGGCCGGTGGCGCTCCGGGCCCTCGAAGTGGCGTCATACCGCCACTCTCGGAGGCAGGG # Right flank : GGGCGTCTGGGTATGTCGAGTCCTCCTCATCGGGGAAGGGTTCCGGGGCGGGGTCGGTGGGGAGGGCACATTCTGCGTCCGGTTCGCCAGCCCCTGCCCGTCATCCTCCGCGAACGCGCACCTCCCATCTGCGCGTTTGACTGGAGACCTGCGCGCTCGCGGAGAACCGGGGGACTCCCGGCGGGGCCGTCCAGGCGGGCGCCGGACCCGCCGCCCACTGAATAACCTTCACTGACACAGCCGGTCCCTGAGGCGGAACGATCCGCTGCGTCGAATTCGGGCGAGGACGGTGAGGTCCTCGCCCTTCTTGCTGCTCGGCCGCGAATACCATCGCGAGCCGCACGGTCTCCCGGCCGCACGAGGACGACGGTCATCGAGCGGCGATCAGCGCGCCATCCGTGTCGGGTCATTAAGCCTTTCTCATCAGAAGCGGTGGCTTGGAGGCCGGAGTCGGCGCGATGACGCACGATCGTGGTGGGGCGTGTGAGGCTCCCGGGGCT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1573515-1575191 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067336.1 Actinomyces sp. HMT897 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1573515 28 100.0 33 ............................ CAAGAGGAATCATTTCAGGCACCGTAGGCCAAT 1573576 28 100.0 32 ............................ GGCCGCAGAACCGACCTCAGACGCCCCAAAAA 1573636 28 100.0 33 ............................ GGATATGGCCACGTAGAATATTGTCTCGCCGGG 1573697 28 100.0 33 ............................ TGTGGCGTCCGCCATGCGGAAAGGAGTATCATG 1573758 28 100.0 33 ............................ GGTCAGCCGGTGATTTGGGGGACTGAAGGTTTT 1573819 28 100.0 33 ............................ CCGCCATACCGGACTTCTCTTCGTGGTCAACAG 1573880 28 100.0 33 ............................ CCCCCACCCACAAGCCGCTCTAGACCCCTTACA 1573941 28 100.0 33 ............................ CACCGGCTCGGGCTTGTTGGACTTGTTGTCCAC 1574002 28 100.0 33 ............................ GGCCGTCAAAGTCAACGCTCGCCCACGCGGCCA 1574063 28 100.0 33 ............................ CATGGCCCTGAGGGCCGAGCGCGCCGACGCCTC 1574124 28 100.0 33 ............................ CGAAAGATTATCGTCAACCTGAACTACGCCAAC 1574185 28 100.0 33 ............................ GAGCTCTCAGAGCATGTTTTGACCCTGACCCCA 1574246 28 100.0 33 ............................ CATACGCTTGAACTCGGCCTCGCACACCGTGCT 1574307 28 100.0 33 ............................ TTTTCGTTTACGATATTGGTGTGCCGGTACGAA 1574368 28 100.0 33 ............................ CCGCTCCGGGAAGCACCCGGAGCGCAGCGAGAC 1574429 28 100.0 33 ............................ GTTTGACGACTTCAAAATTAACGGCAAGAAGTT 1574490 28 100.0 33 ............................ TGTGCCGCCTTTGGTGCGTAGGGTCATCATGTA 1574551 28 100.0 33 ............................ GTCCGCGCTGTAAGGAGCGGTGACGGAGATCAT 1574612 28 96.4 33 ............T............... GCCGATGGAGAAGCGGTCGATCACGCCGTCGCG 1574673 28 96.4 33 ............T............... CGGCTCGGCATCGGCGCCTGAGGAGCGGGACGA 1574734 28 100.0 33 ............................ CTCGCCCTCCTCGGCGGTGACGACCCTGGTCCA 1574795 28 100.0 33 ............................ GATCCGCTCACGCCGGTGAGGGGCGCCGACGTC 1574856 28 100.0 33 ............................ CCACGTGTGGCACTGCTCCCTGTCCCTGCGGCC 1574917 28 100.0 33 ............................ GTCGCGGTGCCCGTAGAGAGGTAGGTCACCCCA 1574978 28 100.0 33 ............................ CGCCTCCTTCATCGTCATGCGCTCGGACTCGTC 1575039 28 100.0 33 ............................ GATCCGCTCACGCCGGTGAGGGGCGCCGACGTC 1575100 28 100.0 34 ............................ CCCGTAGGACCAGCAGGCCAGCAGAACCGCGGGA 1575162 28 85.7 0 ............T..........G..CA | AC [1575184] ========== ====== ====== ====== ============================ ================================== ================== 28 28 99.2 33 GACAGCTCCGCGCATACGGAGATTAAGG # Left flank : AAGGACGCGCAGAGTCTTGAGACCCCTGACGGACTGGTGGCCGGGCAGCGGCTGACTGTCCGCGCGGTTGCCGAGAAGCGACGCGAGGACGAGAGCGGACGCACCCGCATCCGGGCGGTTCGGGACGAGGAGGCGGAGGACTGGGCGCGCGCGCTCCTGGGACGCCACGGCCTTGAGGTATGCGACCTCAAGGTGAGTCCCCGCTGGTTCCTGGGAAGCCGGGGGCAACGCTCCTTCATGGTCCGTGACCTCACAGCTACCGTGACAGCAGTACGAGAGGAGGCAGTACGTGCCTACGTCAGCGGTATCGGCCGCGGAAAGGCCTTTGGGTATGGCATGCCCATTGTGCTGTGATATCAGCACGTTTAACGTCGCTAAGTGCACAAACTGAGGTGCGACGCAGACACGCCTCTGGTACCCTTGCGGGGTCCGCAGCAGCCAGCAGGTCGGCAGTAAATGCACGACGACCACCCGCCCAACAAACCTGCAGGTCAGCTAGC # Right flank : ACGTGCATGTCGTCAATTCGGCCTCGCCCGTCGTCCGCCCTGTACCATATACAACCCTCGGTCAGCCCGCCAGCCGACCGCCATCGCTTGACGCACCGCGCAGGGCACCCTGGGGCTCACGGAATCATACGGATATCTCAGAGTCGGTAGGAGGGGCGGCACAAAAACTCGTGCAGTTTGCGCGACCTAATGCATTCTGCAAGAACTCGTACGCTCAGCGCCCGCACCTGACGCCCGGTACCGGACCAGGCCCCGGCAGCCCCAGGGCACCGCGGACCACAAGCCGGGGAGCTGGCCAGAGCGGGGTCCCCGCTGCCAGGCGGAGGGTGCGCCACGGCGGGCGGCCCGGCGCCAGGCGGGCAGGCGGGGCACGTCAGGTGCACACCGTGCGGACCCCAGCCGCAGCCTGGTGGCGGCTAGGCGGGCAGATGGGACACGTCTGGGGAGGCCAGGGTGCGCCACAGCGGTCGGCCTGCTGGTGCCGGGCGGGCACGCGGGGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACAGCTCCGCGCATACGGAGATTAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 1772341-1772584 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067336.1 Actinomyces sp. HMT897 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================== ================== 1772341 24 100.0 46 ........................ AATCTCTGCCGATACTTCGGCGGGAAGGAGGTGGTCTCAATGCACC 1772411 24 100.0 51 ........................ GCGCGAGAGCGTAAGGATATCATCTCCTTCGATGATGTGTCTCAATGCACC 1772486 24 95.8 51 ..............A......... AACGCGTTGACCCTGGACGACCTGAAGGTCGGTATGAAGTCTCAATGCACC 1772561 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =================================================== ================== 4 24 99.0 50 TAGCGGTGCGGGGTGCTCCCTGAC # Left flank : GGCTCGGACTCCTGACCTGCGTGGACATTGAGCGCACAAAAGTAGGAACGGGGTGGACCCGGCTCTGATCCTCAGATTGCGACAGAACTGACCGTCCGCCCACCACCGCCAGGACCGCGCACAACCCACCCACCCCCACCTCAGGACAGGACCAGGAGCGAGGTGGCGCGGGGCATAGGGACCGTAGCCCGCCGGGCCCGAGGCGGTGACGGAGGCAGTGCGGGGCACAGGGATTATGGCGACGGCCCCGCCCAGACACCAGACCAGACAGCAAAACAGCCCACCACCCACCTTAAAGGGGTGTCCCGTCACGCCGGTACAGGCCTCCCCGGACCAGCAGCCCGAGGTAGGTGGACCCGGCCCCCTGGCCGCACCAACACGGATGCGGCTGACCCACAGGAACACAAGACACCTTGCACGCGGGAGAGGGTCCGGCACACAGCACGACCTATAGCGCGGACAGCACAAGCCCACAACCAGTCCCTGTCCTATTCGCGCTA # Right flank : CCCTGCTCCTGGGAGGCGCGTGGTTGCAACGTTTCCAGGGGCTGGATCGCCACCGGCCCTGCGGGGCCCTTCCGGCAGGTGGCCGGAGCACCCCATTTCTACCACCTTTCGTTGGTATGACGCCACTCGCCACCGACGGCCCCAGAGGCCGATCCGGCGCCGGCTTTGGACGAGACCATGCGGAAAAGTGGCGGTCGAGAGGGGTGTCCCGCACCACACTGATGGTGACCAAGACCACAAGCGCGGCTGGCCTCAACCCCGCGAGCACCCACACGTGCGCCCCCTCCCCTCACTAGGTCCACTCCGGCACGGGTCCATTGTCGAGCGCGGGCGCCGTGCCACACACCCCCACCTGTCCCGCACAGGACACACGCAACAGACAGAGGCAGACCGTGCCATTGGGGTCCATTGTAGCGCGAACGGAATGGAATCTAATCGTGGACCGATTTGTCTGGGGCAGGTCGTGTGGCAGAGGAGGACTCTCTTCTTCTGTCGTCTGC # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.30, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGCGGTGCGGGGTGCTCCCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 5 1932490-1932814 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067336.1 Actinomyces sp. HMT897 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1932490 37 100.0 35 ..................................... ATGCACGTGGATCTTCATACCGACCTTCAGGTCGT 1932562 37 100.0 34 ..................................... ACTGTTTCTATCACACCAGAATATGCCTCTATCT 1932633 37 100.0 34 ..................................... CGGTCACGCCACGTCTCACACAGGAGCCGCCCTG 1932704 37 100.0 35 ..................................... GCGCCAGCGGCCATGAGCAGCCCACGGTAGTGGGT 1932776 37 78.4 0 ........C...T........T..A...G.A..GA.. | T,T [1932800,1932805] ========== ====== ====== ====== ===================================== =================================== ================== 5 37 95.7 35 GTCAGGGAGCACCCCGCACCGCTAGGTGCATTAAGAC # Left flank : TCAGGAGGCTGTTTTCGGGTCATGTGTGTGGAGGATATCTTTTCCTGCTGCCTGGCCTGCTCCGGACAAACCACTCGATCCTATTCTGTCCGCGCTGTAATGGAGTCCGACGACGTGGCCTGTCTTCTGCTTTGTACGTGTCCTGTACGGGATGGGTGGGGGCGGTGCTCGTGCTCGACGACTGGGCCTGTGCCGGAGGGGATCTGGTGAGGGGAGGGGGGCGCACGTGCGGATGCCCGCAGGGTTGAGGTCGACCGAGCTTGTGGTCTTGGTCACCATCACTGTGGCGCGGAACACCCCTCCCGACTGCCACTTTTCCGCATGGTCTCGTCCAAAGCCGGCGCCGGATCCGCTCCCGGGGCCGTCGGTGGCGAGTGGCGTCATACCAACGAAAGGTGGTAGAAATGAGGTGCTCCAGCCACCTGCCGGAAGGGCCCCGCAGGGCCGGTGGCGATCCAGCCCCTGGAAACGTTGCAACCACGCGCCTCCCAGGAGCAGGG # Right flank : CAAACTCTAATTGTAGAGGATAGAGCATCCCTAGTTGGTGCCGCTGGTGGAAGTGGTGCTGGTGTGCTGCTGTTCTGCCTGTGGGAGTCAGGGGCTGTCGGCCGGGTCGCTGTTACCGATGAGGAGCGGAAGCTCCTCGTGGAGAACAAACGGAGCGTGCCGTGTGTTCTCATGAGGGTGAAGTCGAGGGCGGTGCTGCTCCTGGCCGGGAGGACGAGACCACACCCCGGCAGCGGGAGGAGATCCCAGGGGGCTATATTGGTTCCCCGGGCCAGGACAGCCGAGTTGGAGCCCCGCGGTCCTGAACCAGCCAGGACAGTACCACCATTATCGACGCCCTCGCAGGCCTGACCCTTGGGGGCACCGGGGGAGAGTGATGTAGATGAACAACCCCACAACCAGACCTTGTTCTGTATACGCAGAACTTAGGCCCCAGAGTTTGTCTCTCCAGGTAGGCTGAGATTATGTCCGCCTCAGCTCCCGTCATGATCGATGTACCA # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCCCGCACCGCTAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 6 2385641-2385897 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067336.1 Actinomyces sp. HMT897 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2385641 37 100.0 37 ..................................... GCAGTAGCAGGTGTCCACGGTCTCACCCGCGTCCCAC 2385715 37 100.0 36 ..................................... CCACGATGGCTGGTTGCTGGCGATCACCTCCAGCCA 2385788 37 97.3 36 .....................T............... CCACGATGGCTGGTTGCTGGCGATCACCTCCAGCCA 2385861 37 97.3 0 .....................T............... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.7 37 GTCAGGGAGCACCCCGCACCGCTAGGTGCATTAAGAC # Left flank : CCTTCACCACCTACATCACCAACCGCACCTTCGACTACGACCTCGAGCACCTCCCAGTCACACCACCACACACCGATCTTGTTTAATTCCAGCCATATTAAGGAGTCCGACGACGTGGTCCACCTCTGTCTGTTGTGCACGTCCTGTGCGGGACGGATGGAGGTCTACGGCACGGCGCCCGCGCTCGACGACGGGGGCCTGTACCGGGGGATCTGGTGAGGGGGCGTGGTGCGGTGCCCGCGGGGTTGAGGCCGGTCGAGTCTGTGGTCTTGGTCACTACCGATGTGGTGCGGGACACCCCTCCCGACCGCCACTTTTCCGCATGGTCTCGTCCAAAGCCGGCGCCGGATCCGCTCCCGGGGTCGTCGGTGGCGAGTGGCGTCATACCAACGAAAGGTGGTAGAAATGGCCCCGTTCTGGCCACCTCCGGAAGGGCCTCCACAGGCCGGTGGCGATCCAGCCCCTGGAAACGTTGCAATCACGCGGCTCCCAGAGGCAGG # Right flank : CACGGCATCCACCGTGCCGGAATACGCTTCCATTTTAGGTCAGGGAGCACCCCGCATCCCTTTAGCCCTCTTGGTGCGGACGGGGCAGGGTCTGCTTGCGGGGGTCGGGGCTCCTGGTCACGCGGGTGAGGGTGGTGTGGGGGGACGTTTTGTGCGGGGCGGGACATTTTGTGCACAGGGTGACGTTTTGCGCAGAAGGTAACGAATCTGGGTTGTTTTCTGCGCAATCGGTTACCTTGTGCACAAAATGTTCCCCTAGGCGGCCGCACTGGTCCTCTTTGCCGGGAGGGCCGTCTCTGGCCTGGTCTCATGAGGTGGCCTCCTGTGGCGTGGTCAGGGTAAGGGGCCTGGTTGTGGGGGTGGGGTCGGAGGTGGGCCGTCGGGGTTGGCTTCCTTGTCGGGGTATCTGCTGGTTGTGTCGTCCTGTAGGGGTCGGGGCGCGGGGTGTTTGCTTCCGGGTTGAGGTAGCGTGCAGGTCGTGTGGGGGCGGGGGTGGTCGC # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCCCGCACCGCTAGGTGCATTAAGAC # Alternate repeat : GTCAGGGAGCACCCCGCACCGTTAGGTGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 7 2489671-2474812 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067336.1 Actinomyces sp. HMT897 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 2489670 29 96.6 32 ............................T GAAAGCCCGCGCCAAGTACACCGCCCTACTGC 2489609 29 100.0 32 ............................. GGGGAGGCACTTTTATGCCCACTTTTCCCAGC 2489548 29 100.0 32 ............................. TGTTTACTTTTTCACTGTTGATAACGGGGAGA 2489487 29 100.0 32 ............................. GCCCGGAATGCGTAGTCAGTAAAGGCCATATC 2489426 29 100.0 32 ............................. GACTATCAGCTCCATACAGGCGTCTGTCTCAG 2489365 29 100.0 32 ............................. GTGATGTAGTTCTCACAGAATCGGATAGTGAT 2489304 29 96.6 32 ............................G CCAAAATAAGGGCCCCCAAAACACACCCTAGA 2489243 29 100.0 32 ............................. CACAAACGAAACGTGTTCGTCAACTTGGATTA 2489182 29 96.6 32 ............................G TATTCGCGATAGCGTAGTCGGCGTATTCCTCA 2489121 29 100.0 32 ............................. GTGACGTAGTTCTCACAGAATCGGATAGTGAT 2489060 29 96.6 32 ............................G CCAAAATAAGGGCCCCCAAAACACACCCTAGA 2488999 29 100.0 32 ............................. CATATCCGATACTTCAGGTTTTTGGTGACCTG 2488938 29 100.0 32 ............................. CATATCCGATACTTCAGGTTTTTGGTGACCTG 2488877 29 96.6 32 ............................A ACGCTACGAAGGAGCAGAAGAATGGGCGGGAG 2488816 29 96.6 32 ............................G TCCTCGACCTGACACCCACAGGATGTCACCAC 2488755 29 96.6 32 ............................G TATTTCTGAAAAAACTTTGATCCCACCATCGC 2488694 29 96.6 32 ............................G GCGGAGGCGGAGAAGTGGAAGGCGCTCTCCCG 2488633 29 100.0 32 ............................. CCCAACACACCCCCACCAAACTTAGGTAAACC 2488572 29 96.6 32 ............................G GCCGGGGATCCCCTTGGAGATCTCCTGGTCAA 2488511 29 100.0 32 ............................. CCCAACACACCCCCACCAAACTTAGGTAAACC 2488450 29 96.6 32 ............................G GCCGGGGATCCCCTTGGAGATCTCCTGGTCAA 2488389 29 96.6 32 ............................G GAGCTTCAGAAGTGTCTAAACAATAGGGCCTT 2488328 29 100.0 32 ............................. AGGTAGAATCCCTCAGCAGCACCGCCAAGACC 2488267 29 100.0 32 ............................. CGTGGCGTTGAAGCCCATTCTTGGACTTTCTT 2488206 29 100.0 32 ............................. ACCTGTGGACAAGACATTTGTGCGATTACTGA 2488145 29 96.6 32 ............................T AGCGTTGACCTTGTCGACAAAAATGTCAAAAG 2488084 29 96.6 32 ............................G TCCAGGTGCGCCGATATCGTTATCACTTCCAC 2488023 29 96.6 32 ............................G TCAGCGTCGCGTGAGGCGACGTCGGCACTGAC 2487962 29 100.0 32 ............................. CGTCACGGGATAGAACTCGCGGCGATTAACAG 2487901 29 100.0 32 ............................. CGTCACGGGATAGAACTCGCGGCGATTAACAG 2487840 29 96.6 32 ............................T TAGTCATACACATAAGGTCAGACGGCGGCTTA 2487779 29 96.6 32 ............................T CCGGCCGGTATCGGCATAGAGTGTCGGCCAGA 2487718 29 100.0 32 ............................. TGAGACGTCAAGCCCGAATTTCTCGTTAATGA 2487657 29 100.0 32 ............................. GCAGCATCCGCTAATGCGAATAACGCGCTCAC 2487596 29 96.6 32 ............................G CGGGCCGTCGTCGCGGACCGGGCGGCCCGCGA 2487535 29 100.0 32 ............................. GTAGCCACCCTAACAACTGCCACTGACATCGC 2487474 29 100.0 32 ............................. TTGGGCGTGAGTTTCATCCTCAGTGGCGAGGA 2487413 29 100.0 32 ............................. TTGGGCGTGAGTTTCATCCTCAGTGGCGAGGA 2487352 29 100.0 32 ............................. GATTGGGTCTCGACTCATCCCTATGGGACATG 2487291 29 96.6 32 ............................T TCGGCGGCGGTGATCTCACCCTTCTGCATGGC 2487230 29 100.0 32 ............................. TGCTGAACGCGCCGGTGACGGTGTCCCAGCCG 2487169 29 96.6 32 ............................G GTTGGGCGCGCGTGGCGGATCCTGCGGGACGA 2487108 29 96.6 32 ............................G TCGGGTCGCCGTGACGCCGATCACACACGCAG 2487047 29 100.0 32 ............................. GCCTCGCTGGCCTCAGTGATCTCGGTCTCAGT 2486986 29 100.0 32 ............................. CCCCGCCGTCACCATGGGGAACCACACGGCTT 2486925 29 100.0 35 ............................. CCCCCCTCACGGTGCACGCCGCGCGCGTACCGTGC 2486861 29 96.6 32 ............................G CCATTCTAACCATCATCAAGATCCGGCAGGAA 2486800 29 96.6 32 ............................G GGGGCCGCTCAGCGCCTTCCCCTTCGACCGGG 2486739 29 96.6 32 ............................G CCCGGGAAAGGCCACCAGCGGCCCCGCCAGCG 2486678 29 96.6 32 ............................G TTGTGGACGTGTGACGCCGATCACGCACGCAG 2486617 29 96.6 32 ............................G TCGGGTCGCCGTGACGCTGGTCACGGTGCCCG 2486556 29 100.0 32 ............................. CGTATGATCCCCGAGATCACCAAGATGACAGG 2486495 29 100.0 32 ............................. CGGTCCTCCCTACCACGCCCCGTATCCACCCA 2486434 29 100.0 32 ............................. CGGTCCTCCCTACCACGCCCCGTATCCACCCA 2486373 29 96.6 32 ............................G TTGTTGACCACTGTGGCCCGCAGCACATCGTC 2486312 29 96.6 32 ............................T CCAATCCACACGAGCAAAAATAAGCGGACCGA 2486251 29 100.0 32 ............................. CCCCTCGTCAAGCGCTCCCTGGTGATCGTGGA 2486190 29 96.6 32 ............................G AGCAGCGGGATCGGCCGCAACGTCGACATCTT 2486129 29 96.6 33 ............................G CGAGAGTGCCGGTGGTCAGGCCGGGGGTCATCC 2486067 29 96.6 32 ............................T CGCACTGACCCAAGGCCGTCGGAAACGCCACC 2486006 29 96.6 32 ............................G TCTCCTCAGAGACGACGACGGGTTGACCCCGC 2485945 29 100.0 32 ............................. CGGACGAGCAGTGGCGGGAACTGCGCTTGGGC 2485884 29 96.6 32 ............................G TGAGGCCAAGGCGGCCCCACGGTTTCCCGTGG 2485823 29 100.0 32 ............................. GCCCCTGCCTGCCATGGAGATCCACCACCTAT 2485762 29 96.6 32 ............................T CCAATCCACAAGACGCAAAAAAGCTCTTCAGA 2485701 29 100.0 32 ............................. CGACCTCAGACACCCCAAAAACACCTAACCCA 2485640 29 96.6 33 ............................T TCTCCGGCGTAATGCTGGGCGTACCCCTGAGCA 2485578 29 96.6 32 ............................G CGGTTTTAGGTTGATTTTTCGGGATTCTCCTA 2485517 29 100.0 32 ............................. GCCTCCACCGTCGGGTCCTGGGGGGCGTCGCC 2485456 29 96.6 32 ............................G GCGTCGTCGCTGAGCGCGGGCTGACCGTAGTC 2485395 29 96.6 32 ............................G GCAGCTGTGAGGCTCCAGAGAATCGGTATCGG 2485334 29 100.0 32 ............................. GCTGTAGGCGCTTCTGGAAGAGGGCTTCTGTC 2485273 29 96.6 32 ............................G GACGCCCAGGCCCAGCAGGCCGCGACCCTGGC 2485212 29 100.0 32 ............................. TACGCCCTAGAAAGCGAGAAACGCCAGCCCTT 2485151 29 96.6 32 ............................A GGGGGACACATGACGACGGAAAGCCGCTCAGA 2485090 29 96.6 32 ............................G TCGGCCGAGCGGATGCCAAAGCACTCATGAAC 2485029 29 100.0 32 ............................. GCGTGGGGCGCGGTCACGAAGACCGCTATGGC 2484968 29 96.6 32 ............................G GACGCCATCCGCGCCGCCACACACCCAGCATG 2484907 29 96.6 32 ............................G CCAGAGCCACCATGCTCAACCACGCCCTCGAA 2484846 29 100.0 32 ............................. GTCCATCGCAAGATCACCGGGACTCGCACGAT 2484785 29 96.6 32 ............................A CGTCCACTGTCTGGAACTCGGCCGCAGCAAGC 2484724 29 96.6 32 ............................G CAGATGTACACTGGAGTCATCGGGAGGGCAGC 2484663 29 100.0 32 ............................. CGTTCCGAGGACCATGAAGAAGATATCCATCT 2484602 29 96.6 32 ............................T CGGGCCCCTACCGTCGGCGGCCGCGAGACGAG 2484541 29 96.6 32 ............................G AGCAGCGGGATCGGCCGCAACGTCGACATCTT 2484480 29 100.0 32 ............................. ATGTTGCCCTGGGATATGTAGGTCTTAAGCCA 2484419 29 100.0 32 ............................. CGCGCTTGCTAGGCCGATCAGTTCTCCGATCG 2484358 29 96.6 33 ............................G CTCACAGCTTCTCTGAACGGCCTTCCAGCCCAA 2484296 29 96.6 32 ............................T CAGGGGCGCGCGCTGAGGGACGTGACCCTGAC 2484235 29 100.0 32 ............................. CTGGCGGTACCACGCGCCCGGGGCGCCGGGGT 2484174 29 100.0 32 ............................. AGATCGGCGACATGGCGGATCAGATCGGGGAC 2484113 29 100.0 32 ............................. AGACGGTCGCAGCACGCACATATCATGCCATG 2484052 29 96.6 32 ............................G TCCCGGCCGCGTGACGCCAGTCACGCGGCAGA 2483991 29 96.6 32 ............................A GCGCGGTTCTCGCTCTCGTTGACCCCGCGTGA 2483930 29 96.6 32 ............................G CCAGCCAGGCTCAGGTACTCCCGGGGCTTCTT 2483869 29 100.0 32 ............................. ACTGCTACAAAGAACACGCAGGAGCCAATCCT 2483808 29 100.0 33 ............................. TCGCTCCTAGACCCCTTACAGGAGCTCTCAGGG 2483746 29 100.0 32 ............................. ACATAGCAAACCCCGGAATCCCGCCAACGCAG 2483685 29 96.6 32 ............................A AACCGCGGGGCCACCCCCCTTAAGACCACCAA 2483624 29 96.6 32 ............................G GCACCCCCGCTCACGCGGGGTCAACTGGACGG 2483563 29 96.6 32 ............................A CCCCATCCACCCCGGCCCACACCGGCACACCC 2483502 29 100.0 32 ............................. AGCATCTTCGACCGCTCCACGAAACCGCGAGC 2483441 29 100.0 32 ............................. ACATGGCAAGCCCCGGAATCCCGCCGTCGCGG 2483380 29 96.6 32 ............................G TCATTGAGCGCCTGGGTCAGCTCCTGCCAGAG 2483319 29 96.6 32 ............................T TTTCCCTTCGATATCAATTTCCTCGAGACTGA 2483258 29 96.6 32 ............................G GCGCTTAACGATATCCGCGAGGAGAACGACAA 2483197 29 96.6 32 ............................T GCCGGGCGTACCCCTGGGCATAGGGCCAGGCG 2483136 29 100.0 32 ............................. CCGGCACGGCCCCGCGGGAAACCACGGGGCCG 2483075 29 96.6 32 ............................G CGCGTACCGGCAACCTGCGAGTTGAACTCAGA 2483014 29 96.6 32 ............................G CGCGTACCGGCAACCTGCGAGTTGAACTCAGA 2482953 29 96.6 32 ............................T GTCATGACTCAGGTGATCCGTCACGTGGGTTT 2482892 29 100.0 32 ............................. TGAAAACATACTCCTGAAAATTGAAGCTGTCA 2482831 29 96.6 32 ............................T GCTAAACTCTTGCACCTTATGGAAGCTCATAA 2482770 29 96.6 32 ............................G CTGAAGGTCGCGCCCTTGGTGTTGCCTGCCTC 2482709 29 100.0 32 ............................. CGCGAAGGCGAGCTTCGCGCCGGTGACTATCC 2482648 29 96.6 33 ............................T CAGACGACAGGCTCGCCTGGCGGGGCCTCCAGG 2482586 29 96.6 32 ............................G ATACTCTGGACGCCGTCCTTCAGATTCGTAAA 2482525 29 96.6 32 ............................G GGGTCCCGGCCCCGGCCGCACGATTGGTCGCC 2482464 29 100.0 32 ............................. GGGCTGTGAACCGGGCCACGAGCTGGTCGCAC 2482403 29 100.0 32 ............................. CGGGTCAACTCCCGCCGGGAATTCTTCTACGC 2482342 29 100.0 32 ............................. CCCCGAATCGTGTCCCGGCGACCTGTGAGTTG 2482281 29 100.0 32 ............................. CTCATCACAATCCTTCCAGTCCAAAATGATGT 2482220 29 96.6 32 ............................G GACGCTTACATGGGTCCTGCCACCGTCACCGA 2482159 29 100.0 33 ............................. TGCGTCCTCACCGTCAGGGCCGGTAACGGCGAG 2482097 29 100.0 32 ............................. GGCGATGGGCCTTCCGGACATGATCGTAGCAG 2482036 29 96.6 32 ............................T TGAAAGTGCATTACTGGCATTTGCCGCTGCCG 2481975 29 96.6 32 ............................T ACCATCATCATCCGCATGGAAAAAGAAACCAT 2481914 29 96.6 33 ............................G ATACCGCGAATCGTCTGCCGGAACGTCTCAGGG 2481852 29 100.0 32 ............................. AGGATGTCCCCGGGCACCTTCGCGTCCCACGC 2481791 29 96.6 32 ............................G CTGGGCAGGCCAGTGTGCTTCGCGACCCACGA 2481730 29 96.6 32 ............................G AGGGAGCAACACGACAACGGAAAGCCGCTCAG 2481669 29 96.6 32 ............................T TGAGGGGGTAGAACACAATCCGGGGCGCCGGC 2481608 29 96.6 32 ............................G GGCCGCCAGCGGCCCCACTGGCACTCACGCGG 2481547 29 96.6 32 ............................G GCATCCCAGATCGGCTTGATGACGCCCTCCCA 2481486 29 96.6 32 ............................T ACGGCATGATCTCACGCATACGTGTCCGCAGC 2481425 29 100.0 32 ............................. TTCCCCTTCAATATCCGGTTCCTGGAGACTGA 2481364 29 100.0 32 ............................. GGTCACGTTAAAACTCTTGACGATATTGCTGG 2481303 29 96.6 32 ............................T GAGGCCACGGTGTACACCAACCAGGCCGGGCC 2481242 29 96.6 32 ............................G TCAGCGTCCGGATCCGCCCCCAGCCAGGCCCC 2481181 29 96.6 32 ............................G TCAGCGTCCGGATCCGCCCCCAGCCAGGCCCC 2481120 29 96.6 32 ............................T AACGGCCTACTAGGAGGTCACCCTCTTGTACT 2481059 29 100.0 33 ............................. GCTGCGGCACATGGTCAGACGGCGATCAGCAAC 2480997 29 96.6 32 ............................G CGACGCAGAATTGCGAATAGCGTTAAGAATGG 2480936 29 100.0 32 ............................. GAACGTAAGGGGCTCAGGCCACTCATGAGGCA 2480875 29 100.0 32 ............................. GCCAGTTGACAGCGTATTCGTCCGGTTACTGA 2480814 29 96.6 32 ............................T TCCCCTAAGGCGGAAGACACAGTTTCCAGCAC 2480753 29 96.6 32 ............................A CCTTCAGTTTCGCCGTCACCTGCCAGCCGAAC 2480692 29 96.6 32 ............................G TCATCACCGCCCTACAGGAGCACCTCACCACA 2480631 29 96.6 32 ............................G GAACACGATGACCACCCCCAACAAGAAGCCCC 2480570 29 96.6 44 ............................G TGAGGCCAAGGCGGCCCCACGGGAAACCGTGGGGCCGCCCCACC 2480497 29 96.6 32 ............................G GCCCTCCAGGTCGAGGAGGACCTGGCCGAAGG 2480436 29 100.0 32 ............................. GTTGCCTTCGTGTACATGTTTCTCCTCAGGGT 2480375 29 96.6 32 ............................T CGAGGACTTTCTTTCATGAGACGAGGACGCAT 2480314 29 100.0 32 ............................. ACCCCCCACCACAGCACACCCCGAAAAACGCG 2480253 29 96.6 32 ............................T CTGGCAGGGCAGGATCGACGAGGTGCGTACGG 2480192 29 96.6 32 ............................G AGTCTGGCTAATGTTCCCCTTCGTCGCCACGG 2480131 29 96.6 32 ............................A ACTTAGGTAAACCTAACCCACCCATAACCCTT 2480070 29 96.6 32 ............................G GACTTCTCCCGCCGCCGGACGTCATCATCACC 2480009 29 96.6 32 ............................T GGATAACCACGCGCTTCTACGGATGGACGGAC 2479948 29 100.0 31 ............................. CGCCCACGACGACCATACGACCGCGCCACGC 2479888 29 100.0 32 ............................. GGCCCCCAGCCCGAAAGGGCATCCCCGCTCAC 2479827 29 96.6 32 ............................G ACAACCTTGCCGTCGGCGTCGGTGATGACGCC 2479766 29 100.0 32 ............................. GTGCCCGACAAGGAGTAGTTTTGGCTGTTAAC 2479705 29 86.2 32 ...........GT.T.............G GGTAGCACAATTCGACAACCTTAAGATTCGTG 2479644 29 86.2 32 ...........GT.T.............T AAGCGAAAGTGCCCATTACCGAGCGTGCGAGT 2479583 29 86.2 32 ...........GT.T.............T GTGGGCGGTAGCAGTGAGGCGTCTAGTAGTGA 2479522 29 86.2 32 ...........GT.T.............T GTATGATCGGAAATCCTGAGGTCCGTCGGTGG 2479461 29 86.2 32 ...........GT.T.............T ACCCTGTCAACTGGGGTGAACGCTGCGGGTAA 2479400 29 86.2 32 ...........GT.T.............G CCGCTCAGAGACGCTCACAGCGCCCCTGAGCG 2479339 29 86.2 32 ...........GT.T.............G GCGACCGAGCGCCTCCGCCTGGACCACCTCCT 2479278 29 89.7 32 ...........GT.T.............. GTCCTCAAGATCGTCCGGGAGACCGGCGACGA 2479217 29 89.7 32 ...........GT.T.............. CCGTTTTTTATGACCTCTGATGAGGCCTCGCG 2479156 29 89.7 32 ...........GT.T.............. CACCTAACCCCCACAGGGCCACACACGACGGC 2479095 29 89.7 32 ...........GT.T.............. CCCAACACACCCCCACCAAACTTAGGTAAACC 2479034 29 89.7 32 ...........GT.T.............. ATGCGGCGCATGCGGGCTGAGTCCGTGCGCGT 2478973 29 86.2 32 ...........GT.T.............G GCCGCCTGGCCGGCCCCGACCGAGCCGGACGG 2478912 29 86.2 32 ...........GT.T.............T TGCGCCGATCCCTGACGTACAGTATACCTGCG 2478851 29 89.7 32 ...........GT.T.............. CACCGCATGAGAGAGAGTCATTCACATCACCC 2478790 29 89.7 32 ...........GT.T.............. CACCGCATGAGAGAGAGTCATTCACATCACCC 2478729 29 89.7 32 ...........GT.T.............. ATGCGGCGCATGCGGGCTGAGTCCGTGCGCGT 2478668 29 82.8 32 .C.........GT.T.............T CAGTGGCCACGTGACGCCAGTCACGCGGTCAC 2478607 29 89.7 32 ...........GT.T.............. CAGTGGCCACGTGACGCCAGTCACGCGGTCAC 2478546 29 86.2 33 ...........GT.T.............A GAAGGGTGAGCCTACTCACATGAGGTGCGTCTG 2478484 29 89.7 32 ...........GT.T.............. AAGGTGCTGGATCTGCTGACTGCCGTAGTCAG 2478423 29 86.2 32 ...........GT.T.............G GGTGGCGCGACATGGACGGGGGCTGGCAGGGG 2478362 29 89.7 32 ...........GT.T.............. TCAGACGTGCTGCGTGACGTAGTGCACGACTA 2478301 29 89.7 32 ...........GT.T.............. ACGACCGACGGCCTGCGCGAGGCGACCATCGG 2478240 29 89.7 32 ...........GT.T.............. ACGAGCTGGCGCGTGGGCTGCTCGGCCCCGGA 2478179 29 89.7 32 ...........GT.T.............. GCCCTCCGCCGCGCCGGCGTGGACGCGACCGC 2478118 29 89.7 32 ...........GT.T.............. CTGCGCCGCACTAATGCGGCGTACCAGCGCCT 2478057 29 86.2 32 ...........GT.T.............G CTGGTGTGGATGTACTCCCCCAGCGGGGTCTC 2477996 29 86.2 32 ...........GT.T.............G AAGTACTGAGAGCATAGGAAACGCCCGGTAGT 2477935 29 89.7 32 ...........GT.T.............. GGGTCCGCCACAGACCCTGGCGGGCAGCGGCG 2477874 29 89.7 32 ...........GT.T.............. GCGGGGTCAACTGTAAGAAGCGAGAGTGCCGG 2477813 29 89.7 32 ...........GT.T.............. GCGGAGTTCACCGCCTCGTGCAGGGTGTCAGA 2477752 29 86.2 32 ...........GT.T.............G GCGTATAGATCTCGTTACGAACGTAGTCAACT 2477691 29 89.7 32 ...........GT.T.............. GCCGATACTGTACAGCCAACGGCGGACCTCAG 2477630 29 86.2 32 ...........GT.T.............T TAGGGTTAGTGAGCCAGTTCACAACAGCGTCA 2477569 29 89.7 32 ...........GT.T.............. TGTGGCGTCAGGGTTACCAGGGCATTCTTCAT 2477508 29 86.2 32 ...........GT.T.............G AGGGCGGCGGCCCAGGTGGAGGAGGACGACGT 2477447 29 89.7 33 ...........GT.T.............. TACTCCTGGGCCGGCGCCCGGGGCCTGGCCGTC 2477385 29 86.2 32 ...........GT.T.............T CTCCTGGACGCCCAGGAGCGGATCGAGCGTGA 2477324 29 86.2 32 ...........GT.T.............G GCCGCGGACAGCCGACGCCCCGACCCCCGTCC 2477263 29 89.7 32 ...........GT.T.............. GCCCTGAAGGACACCGTCCGGGACGGCGTCAA 2477202 29 86.2 32 ...........GT.T.............G CCGCTGACAAAGCCCCCGCGGGGCCAGAGGTG 2477141 29 86.2 32 ...........GT.T.............T CATACATGATTGGTGGGTGGTGCGCGTGCCCG 2477080 29 86.2 32 ...........GT.T.............G ACATCCATGACCTCCACGGCGTACCCGCGGGA 2477019 29 86.2 32 ...........GT.T.............G GACGGCACCCTCATCACCGCCGAGGAGCTCAA 2476958 29 89.7 32 ...........GT.T.............. CATCTGCGGGATGACCGTCAGCGGCTCGGGCC 2476897 29 86.2 32 ...........GT.T.............G TTCTGCCGCATGCTCGCCGGACGCGGCGAGGT 2476836 29 86.2 32 ...........GT.T.............G CCCGCGACCTGGACCGACCCGGACCTGTTCGC 2476775 29 86.2 32 ...........GT.T.............G GCCACGAGCCTCCCGGCGGGACGCTACTGGCC 2476714 29 89.7 32 ...........GT.T.............. CCGACAAGGCAGGGGACGACGACACGGACGCC 2476653 29 86.2 33 ...........GT.T.............A CCGGCGCGGCAACGTGCGCAAGGGCCTGAACGT 2476591 29 89.7 32 ...........G..T.............A AGCCGTGGGATTGTCATACATATTCACAGGGC 2476530 29 86.2 32 ...........GT.T.............G TGGCTGCGCCTCGCAGCCCACGCCAAACGCCG 2476469 29 89.7 32 ...........G..T.............G CGCCGGTGGTGACGGCCCTTCCCGGGCTTCAG 2476408 29 93.1 32 ...........G..T.............. GTTACTAGCCTCGACGAGGTTTGTCAAGTGGT 2476347 29 93.1 32 ...........G..T.............. TGCGCTTGGGCTTCGACACCAAAGCTCGCCTA 2476286 29 89.7 32 ...........G..T.............G GACTCATGCCCCCGCCGGACGTCATCATCACC 2476225 29 89.7 32 ...........G..T.............G TCTTTTAACGTAACTGTTAATAAGGATTCTGC 2476164 29 93.1 32 ...........G..T.............. GCCGTCATGCGCCAGAAGGGCGAGAAGAAATG 2476103 29 93.1 13 ...........G..T.............. CGTAGCGGGGAAC Deletion [2476062] 2476061 29 86.2 32 ...........G.AT.............G GCCACCTGGGCGGACAAGACCCTTGTCGCCGA 2476000 29 89.7 32 ...........G.AT.............. GCGGAGTCCTGGGCCCCCCAGGCCGGGCGCAG 2475939 29 89.7 32 ...........G.AT.............. CCCAACACACCCCCACCAAACTTAGGTAAACC 2475878 29 89.7 32 ...........G.AT.............. CCCAACGGCTACAACACCGACTACGTCCGGGA 2475817 29 86.2 32 ...........G.AT.............G GTCAGCCTGCCCGACCCCATGCCCGCCATCAG 2475756 29 86.2 32 ...........G.AT.............T TCGTGGCGGCGATTCCCGCGTGCCCGCGCTCC 2475695 29 89.7 32 ...........G.AT.............. CCCGGAATCCCGCCGTCGCGATCACCCTAGCA 2475634 29 89.7 32 ...........G.AT.............. GCCCCAGGAAGGAGAGTCTCTGCGCCTACGGA 2475573 29 86.2 32 ...........G.AT.............G GCCCGGTGCGCCGATATCGTCATCACGTCAAC 2475512 29 89.7 32 ...........G.AT.............. GTCACCGAGGGGGTGACCCGCTGCTTCGCCCA 2475451 29 86.2 32 ...........G.AT.............G TCCTCCGGGGCCACCACGTCGGGGCGGCGCAG 2475390 29 89.7 32 ...........G.AT.............. CTCCGCTTCCCGTCGGAGTCGTAGCGGGAGGC 2475329 29 86.2 32 ...........G.AT.............G GGTCAGGTCTCCTCGGGCTCGTCGGGCCAGGC 2475268 29 86.2 32 ...........G.AT.............G AAGCACCCCGGCAGCACGGACATTTTGGCGAG 2475207 29 89.7 32 ...........G.A..............G GAGGTGCGGGGCTGATGGCCAAGAGCGTCACC 2475146 29 86.2 32 ...........G.AT.............G ACCAGCCAGTGGCCGCGCCCGTCGTGGACGGC 2475085 29 89.7 32 ...........GT.T.............. ATGGACTTGATGCCGTCGAGCAGGCCACGGAT 2475024 29 86.2 32 ...........GT.T.............G GAAAAACGCCATGCTCGTCACCCTTGAGCAGG 2474963 29 82.8 32 ........T..GT.T.............G TTCTCGGTCGTGAGCTTACCCTGACCGGCGGT 2474902 29 96.6 32 ............................G ACGGGGTCGGAGTTCTACCACGCCCCGGTAAA 2474841 29 89.7 0 ...........G..A.T............ | T [2474815] ========== ====== ====== ====== ============================= ============================================ ================== 244 29 94.8 32 GTAAACCCCGCACGCGCGGGGATGATCCC # Left flank : GCGGCAGTCTGTTGCCGGCGGCGCGAACTACGCCGAGGAGGATGCAGGAGGATGGTAGTTCTCATTCTCTCGGCAGCACCAGCGTCACTACGCGGGACTGTTACCCGGTGGCTCCTAGAAGTGTCATCCGGAGTGTTTGTTGGCCGTCTTTCGGCTCGTGTGCGTGAGCAGTTGTGGGAGCTGGTTCACGCCTACATTGGCGAGGGGCGCGCGCTACTGATCTGGACGGTGCGTTCCGAACAGCACTTCGCAGTCTCGTCGCTAGGCTACGATCGTGAGCCGGTTGACATTGAGGGGTGCCTGGTGATGAGGACGCCCTACCAGCAGATCGAGGGGGCACGGGCGGTCCCGGGCTCGGTCAAGCCGCCCAGGGAGTCGTGGTCCATCGCGGCTCGACGGCGGCGCTACCGCAACTCTGCCGAGCGGGCACTAGGTCAGCAGTGAAGGAAACCGGGGGGTGGTAGACTCCAGGACCGTTGGGATTCCAAGGATCGCCAAGT # Right flank : GTTCCCAGGGCATTGCATAGGGCCAGTCACGCATCACAGGACTCCAAGCTGCACTGGTTCTTACATACCTCATTAATCCTTGTACCGCCATTCTTCCGAACACCGAGATACCCGCATGGTTCCGAAGCCTTCCGGTCCTCCTCTGCAAGAAATAACGCAACATGCAAGAACTAGTGCTGCCCAGACGGTGGTCGTGACCCTCAAGACCTATCCCCGTAAGAGGTGCAGGCAATACCGTAAGGACGCCTGAACGGCGACAGGACTTGGAATTAGCCCGGCTACCTCCATAGCACGAGCAAGACAGGATCTAGTTGCGTGCTTATTCCGTCTGCGCCGCATGTCTAGGATGCGGTGGCCAGCAGCCTCCGTCGGGCCGGCTGGCGGTCACGGGCGCTAGCGCCAGCCGGACCTGCTGGCGGTTACGGGCAGGCTGTCAGCTGGCCCGGCTGGCGGAGTTGCACATTTTTTTTACAATCGGCGATCAGTAAACGGCGGGATCA # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCACGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //