Array 1 139455-140582 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIZT01000001.1 Methylomonas sp. Kb3 scaffold10_size167160, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 139455 29 100.0 32 ............................. ACCTGTTCGACGGCGAATTCGGCCGCGTGACC 139516 29 100.0 32 ............................. CGTCCATGCTGCACCTACCCTACTCGCAAGGG 139577 29 100.0 32 ............................. ATTATTGGGAAATTGCCGCGCTAGACAAATTC 139638 29 100.0 32 ............................. ATTTGGCATTGGCAGCCGGGGTTGGCATGTCG 139699 29 100.0 33 ............................. CACTCCACGCGCCCGGTGTTTCTGCTGGCGTTT 139761 29 100.0 32 ............................. TTGTGTCCGTCTTGCAATGGGTCTGGTGTTAA 139822 29 100.0 32 ............................. AAAACAAAAGTTACGCGCTCAAACTAGATTCG 139883 29 100.0 32 ............................. AAGGCCGTGTGATTCGGCAATTAATTCCGCTA 139944 29 100.0 32 ............................. AAATAGACATATGGTTGCCTATCTGGTCTCAA 140005 29 100.0 32 ............................. ACAATAAATACACCGGCGAGAGCAGCCATGAC 140066 29 100.0 32 ............................. TACTGTTTGACCCGCAAAATGTAGCGTAATTA 140127 29 100.0 32 ............................. AATCACAACACGCGCGCGCCGAATAATCAGGT 140188 29 100.0 32 ............................. CACACGCCGCCTTGACTTGATAAGAACCGGCA 140249 29 100.0 32 ............................. GGATTCTGGCACGGAAAAGCGGCCTAAACGGG 140310 29 100.0 32 ............................. GCGGTGATGAGAAGGTGGATATTGTGTTTGCG 140371 29 100.0 32 ............................. GCAAAAATTTTGCTGATGACGGATGGCACTTA 140432 29 100.0 32 ............................. CTGGCAAAAGCCCTGGATATAACGCCCGGGGC 140493 29 100.0 32 ............................. TCCGCATCGGCAGAGACCACCAGCTTGGCCTG 140554 29 86.2 0 ...........G..............TGA | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : ATTGCCCCGGCCATTCCCAATGCGGAGGGCATCGGCGATGTTGGTCATCGTAGTTGAAAACGTGCCGCCCAGGCTGCGCGGACGCTTGGCGGTGTGGCTGATCGAAATCCGCGCCGGGGTTTACGTCGGCGACTTGTCGGCCAAGGTGCGGGAGATGATCTGGTCGCAAGTCGAGCAGGGCTTGGAGGAGGGCAACGCCGTGATGGCCTGGTCCACCAATACCGAATCCGGTTTTGATTTTATGACTTTAGGAAAGAATAGACGGCTACCGGTAGAGTTGGACGGCTTGAAACTGGTGTCGTTTTTTCCGCCGGAAGAGGCCGATTTGTCTCGCTCGCCCTCCGGGAGAGGGCCGGGGTGAAGGTGCACTAAATTCCTGTTGGGGTATAGGGCGCTGTAAGGGTAGTCGCCAGCTTTTTAACAACTTGGAAAATACCGAAAAATTTGGTGGAAATTTAGCCAGGTTATTTTTATATGCGTAACAATAAGTTACGATTAGT # Right flank : ACTTGTTGTTGACCTTCCTCATATCGACTCGTGGCTTTGGTGCAAGTGTCGAGGCATGGAATGCGGGGCGTATTCTGTTAAAACCGCTATTTCTGATCGGCTTGCCGGCAGGGAAATTGCTAAAATGCCTTGTTCGCCGGCGAAATGGAGGTTCTCCGGTATTCGTTGCCCCAGTTTGTATTGGCTCGGTTCCCCGTGATTAGAAGAGGAGTTTATTTGATGTTGCAGCAACACTTCGCCGAAGTTACCAGGGTCTATGCGCTGGAGATGATGGCCTTAAGCGGCCGCAAGTGCTGCGGATTTGTTGTTGTCATTAAATTGATATGAATAATATTCCACCCAAACGCGGCCTGGGCCGCGGGCTTGAAGCATTGTTAACCGATATGCCGGCTAAATCGGCAGCGGATAAATCAAGCATTAAGGCGGAAACCGTTCCGGGGCCAGCCGTCCGCCAAGAAAATAGCCATTTGCTTCAAGAAGCCGAAGTGTTAAAGACCCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39620-41750 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIZT01000009.1 Methylomonas sp. Kb3 scaffold15_size99485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 39620 36 77.8 37 TTCGGGC......T...................... CGAGGTCACATCATCAAGACTCATTTCCCGGATAACT T [39624] 39694 36 100.0 36 .................................... ACTCCACTTGAAGCTCCACCACGCCGGAGCCGAATT 39766 36 100.0 35 .................................... GGTTAAGTTGGTCTGGTCGGTAATGTCGGGATGTT 39837 36 100.0 40 .................................... AATCTCAACCCCGGCGGTTTAACGTGCAATTGCCAACTGA 39913 36 97.2 36 ...G................................ AGTCGATAAAGCATAAAAAACCCCCGCAAGCTCGCC 39985 36 100.0 36 .................................... CGCACGGCAAAATATTGTTCCGAGTCATGCAAGCAG 40057 36 100.0 36 .................................... GTGGCGCGAACAAGTTTTTAACCTGCAAGAACAATT 40129 36 100.0 36 .................................... ACCGAAGCAGTGCAAATAACAAATCCCCAACCAATA 40201 36 100.0 35 .................................... CCTTTCGACGGCGGCGAAGTCTACACCGTGCAATC 40272 36 100.0 36 .................................... GCCGGATAACGGTCTTATCACGACAAATAGAATTGG 40344 36 100.0 35 .................................... CCGAGAACGGCAGCAGCAAGGGGTTCAAATCGCAA 40415 36 100.0 37 .................................... CAGTATTGCCGCTATCACAATTGACATTGCATAGCCA 40488 36 100.0 35 .................................... AATAAAGGCGGGGAGCAGTACCGGCGAGGGCACCT 40559 36 100.0 37 .................................... TCTTGAACGAGCAGGTGGTATTGCCGAAGTTGAATAC 40632 36 100.0 37 .................................... CAAGCGGGCTGCGCTACCAATTGCGCCATGTCGGCAA 40705 36 100.0 36 .................................... GACCTGGGCAAGGTGGAAACCGCCGATTTAATCAAA 40777 36 100.0 36 .................................... TAAACAACATAATGACTTCCATGGCTACGTCATGTT 40849 36 100.0 36 .................................... TTCTCCGCATATTTAATAACCCTATGCGAAAGTGCT 40921 36 100.0 38 .................................... ATGGCGCCTGGCGTGACTCGTTCGGCGTCTACTTGTTC 40995 36 100.0 36 .................................... TGCGAAGAATGTGAAGGCGATGGATATGTAAGCCTG 41067 36 100.0 36 .................................... CGGAAAATTAACAACAGCCATATAACCTCCTTCGCA 41139 36 100.0 35 .................................... GGCAGTCGGCACGACCGGAGCGAAAGCGCAGTCTG 41210 36 100.0 36 .................................... GATCTCGGTCGGTGCGGATTTTGTCAAAGCACAGTT 41282 36 100.0 37 .................................... GGCGGGCTACAAAGAAAGTGCTCTCGCGCCTTATTTA 41355 36 100.0 37 .................................... GATACAGAGCCAATAAAAAGGAAAAACAATGAACAAC 41428 36 100.0 36 .................................... CGCCGCCGCTTTTAACTCGGGCGCGTATACCATGCC 41500 36 100.0 36 .................................... TTTAACATACCCGCTCAAATTGGTCGCTATGATACT 41572 36 100.0 36 .................................... TCAATAGCTACAGGTGACTTCTTTTTCCGTAAAGTT 41644 36 100.0 35 .................................... GACAGGTTTTATAAATAATTCAACTAAGGCAAAAA 41715 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 30 36 99.2 36 GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Left flank : ACGACATCCATCAGATGCGTCGTACCGCAGGCCAGAATGAACACCACAAACAGCCACAACACCCGGACATACGGAAAATCCTGCCGATGCCGCGCGAAATAACCCAAGGCAACCGGCAGCAAAAAGTAGGACAGGAATATCAAGCCATCGCTAATCACGAAGGTCCACAACAAACCCGGCGACCAGCTCAGGCAATAGCCATGCGGCATAAAATTATTGTCGGTCAGGAACTTTAGAATGTCATTCATGGCAGGAAGATCGGTAATAGTGATTTGCACGATTTAGGGAACTTGAACGACATACCGTCGCCCCGTATCCGTTAGCTAACGCATAACCCGCATTTGGATTCTCTAAATCCGATACAACTAAACATAGCAGCTAGCCCAAACAGCGTAAGGTTTAGCCACTTTTTATGTGGAATTAAATGCTGGCAGCAGGTAGATGGTTGGGGGGAATACGCTTGGATTATTGACCCGGCCCTATTTATCACGGATGTGCCG # Right flank : CAGCGCGGGCTGGAGGCCATGATTGGCGCGGCCTGCGCGGGCCGTTTGCGAGGACTACGTAAAACGGCCGTTCAACTTTAGCGGAAAAGTTTGCACCGCGCCAATCCAACTTGCTAAGTATTTGATTGTTAAAGAGCTGCCAGCTTGCGAGAGCTGACCGGTTTTTGCGCGCCACTACAGCGCTCGCAAAGCGGCGGCGGAAAATCCACATCAGACGATGACCGGCTGACGTTCCACCACATCGAAATCCTTCCCCAAACTGACCACCGAGGGCTTCACCGTTTCCGCCGGCCCGACATTGATGATCAGAACATGGTCGTCGCTATGATGGATGATGCCATCCAACAGCGCGATTAATTCCGCATGGCGCTTACGACTCAGCCGGCATTGAAACACCGACAATTGCAGCCAATCGCCATAACCTTTCATCAGCCGAAACACCCGCCGCCAGCGTTTGGTATCGCTGATGTCGTAAGTCACGATATACAGGTGTTCGAGGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.80,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA //