Array 1 4365457-4371172 **** Predicted by CRISPRDetect 2.4 *** >NC_007908.1 Rhodoferax ferrireducens T118, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 4365457 37 100.0 35 ..................................... GAGAAAACCGGGCGCCTGGGTTTTGACGGCCCCGC 4365529 37 100.0 34 ..................................... TCGCTCGAAGGTATTGACACGACGCTGACCACGA 4365600 37 100.0 33 ..................................... TAGCGTAATCGAGCTAGATGCTGGAATACTTAA 4365670 37 100.0 36 ..................................... AAGTTCATCTACCTTATGTCAGATCGCCCAGATGGG 4365743 37 100.0 34 ..................................... CGATCGTTGGCCCCCTGCTGGCACCAGAGGCGGC 4365814 37 100.0 35 ..................................... GGTGCGGTCAAGATCGGGCAGCGTGACCCAGTCGG 4365886 37 100.0 35 ..................................... TCCCCCTTATCAACGCTTCGCGGCGCGACCTGGCG 4365958 37 100.0 35 ..................................... AAGTCTGATCTATCCCGCCTGGCGCGTGCATTCCC 4366030 37 100.0 34 ..................................... AATGCGACGGTGTTTGGCGACACCATCTATCTGG 4366101 37 100.0 35 ..................................... AGTCAATATCTTGTCGGTCACCGCCAGTTCGATAG 4366173 37 100.0 34 ..................................... GACTTCGCCGTCAACTCTGGTATCTCGACCGCAA 4366244 37 100.0 34 ..................................... ACTCCGCGGAATGCTTTGCGGAGCACGAAGCCTC 4366315 37 100.0 35 ..................................... TGGAAACTCGCCCAGCTCGGCGACAAGCCCTTGCG 4366387 37 100.0 35 ..................................... CTTACTTAAAGAACTCTCGGAGAATTCCATGAATG 4366459 37 100.0 35 ..................................... GCCGTGCTGGTGTGATCCAGACCAGTGAAGAGGCG 4366531 37 100.0 34 ..................................... ACTTCCAGCGCCAGAGCCAGCCAGCCATACGGGT 4366602 37 100.0 34 ..................................... CCGGTGGTGCGCCCGCGCAAGGTGTATGACCTGA 4366673 37 100.0 35 ..................................... AATCGTCGCGCTGCCCGTTGGCTTACGGTCGGAGC 4366745 37 100.0 34 ..................................... AGCACTGCCGGGCGTGTGGCCCGCGTCGCATAAC 4366816 37 100.0 35 ..................................... AGATGAAAAAACACTGAAACGATTTTGGTCGAAAG 4366888 37 100.0 35 ..................................... TGTTTGACTATCCCGAAGCCGACACGCGCATGCTG 4366960 37 100.0 34 ..................................... AGCGTGGTGTAAATCACAGCACGGCAAAACTCTC 4367031 37 100.0 34 ..................................... ATGCACATGGCGGCGGTGGGTCTTGTCACGCCTC 4367102 37 100.0 35 ..................................... ACCTTGGATTGCATGTAGGTCTGCACCTGATGCCC 4367174 37 100.0 35 ..................................... AGCGGCTTTCCTACCGCAGCCAATAACGGCAGCTT 4367246 37 100.0 34 ..................................... ATCGTCAAGGTGCCTGTGAGCCTGTTCCTGACAG 4367317 37 100.0 34 ..................................... CTTGTAGATGTCCAAGGGTGTCTTGCACGCGGGG 4367388 37 100.0 36 ..................................... GCACCGACTCGCGGCATTGTGCAAAAGGCACTCGGT 4367461 37 100.0 33 ..................................... AACTCAGGTGCAGACCGTCAAACAACTGGTGCA 4367531 37 100.0 34 ..................................... TACCAGGTTCCCGGCATGGATGCGCTATTGAGTT 4367602 37 100.0 33 ..................................... AAGCCACCAGTTGCGGCTGCTGACCGGCGTCAG 4367672 37 100.0 33 ..................................... GTGCAGATCGCCGCGCCGGTGGATTTTGCGATC 4367742 37 100.0 35 ..................................... TCCCCCTTATCAACGCTTCGCGGCGCGACCTGGCG 4367814 37 100.0 35 ..................................... TAGTCTCAACTGGTAATTGCGCCCCGTCATGGCTC 4367886 37 100.0 34 ..................................... ACAAAGGCGGCTACGCCCGTGTTGACGATTTGCA 4367957 37 100.0 36 ..................................... CCCTTAGATAAACTGTGATCGGTAGGCGTGCATTGC 4368030 37 100.0 34 ..................................... CTTTTGCGCAAGGGTCTGGACCATGGCAATGGTG 4368101 37 100.0 35 ..................................... AAGTCGGCGGATGAGGCTGGCATGGACCTGGACGC 4368173 37 100.0 34 ..................................... AAAGCACGCTAGCCAACTCGGTGCATGTTGATCG 4368244 37 100.0 36 ..................................... GCTCTTTTTCTTGATGGTGTTTCCCATGACTGAATC 4368317 37 100.0 35 ..................................... ACCCATCCCGCCCCACCACCAAGCGGTGAGCGGGC 4368389 37 100.0 35 ..................................... TTTTTTCGCCTTGCGTACAAGTCCCCGGCGGGCGG 4368461 37 100.0 35 ..................................... ATCGTAACCCACCGTTCCTGCGCCAGGTGCCGCCA 4368533 37 100.0 34 ..................................... ACATGCACCCTCTTTTCGTCCATGCGCTCCAGGA 4368604 37 100.0 34 ..................................... GGCAACAGTGGCTTGCAGCAGATCCAGGGTGAAC 4368675 37 100.0 35 ..................................... AAGGCGGCTTTGCAGCAGGCCGAGGATCAGGCGAC 4368747 37 100.0 35 ..................................... ACAGTTGCGGGGTGTCCTGCCACTGCGCCTTGATC 4368819 37 100.0 34 ..................................... AACGTTGACATTGCCGAGCAACTCAAGACGCAGA 4368890 37 100.0 34 ..................................... GATACAGCCAGCCGCAACGGAGAGCCATTTGAAG 4368961 37 100.0 34 ..................................... TTGGATGGCGTCACCCGCGCGCCAAAGATGAAAT 4369032 37 100.0 34 ..................................... GCACAAGACCCGCTGATCAAGATTGCGCACCTGA 4369103 37 100.0 35 ..................................... CATATAGACGGTGTAGGTGTCGGCGGCGGCGCCGG 4369175 37 100.0 35 ..................................... ACCATGGGTTTGTCGGGCGGCATCAGCTATGACCA 4369247 37 100.0 34 ..................................... GCGCAATGGAAGATGCGATCCAGCCTGGGTGCCG 4369318 37 100.0 35 ..................................... AACATCAGGGCGGCTTGTCTCTACGCCGGGAGAGA 4369390 37 100.0 35 ..................................... AATGTGTCTTTCACCATCAAGGCCGACCTGCAGGA 4369462 37 100.0 35 ..................................... TCCGATGCCATCGGAATGAACGGAAATCCCTCGGG 4369534 37 100.0 34 ..................................... CCGTGTGCTGTGCCACGCTGGACACTGATACCGC 4369605 37 100.0 34 ..................................... TTTTCCAACTTGGTGTGCGGCCGCGCCATGTTGC 4369676 37 100.0 34 ..................................... AGTCGTTTCCATATTGGTCCTTAGAAGTCGATGG 4369747 37 100.0 36 ..................................... GCTGACCCGGTGGACGCTGGCAAGATGGACGAGGTG 4369820 37 100.0 36 ..................................... GCTGACCCGGTGGACGCTGGCAAGATGGACGAGGTG 4369893 37 100.0 35 ..................................... GTGCGCATCACGGGATTGGCACGCGGCAACCATGG 4369965 37 100.0 35 ..................................... CAGCTTGTGATTTGCCCGGTGCCAGCAGGCGCATA 4370037 37 100.0 36 ..................................... AGCAGCGATCAGGTTGATATAAGCCTGGTCGTAGCT 4370110 37 100.0 36 ..................................... TTCGGTCAGAATCACCAAGCCGGCAGCCTTGGCAAT 4370183 37 100.0 34 ..................................... ACCAACCGCGGCGCCTGGGCGGCCATAACGCTGT 4370254 37 100.0 35 ..................................... TTCACCAGGCCATCCCCCGTGGGTAGTGTCTTGGG 4370326 37 100.0 35 ..................................... AAAAATAACAAAGGATAGCTATGTCGGATGGTCTT 4370398 37 100.0 35 ..................................... ATTTCACCCCTGCCTGAGTGAGAGGAAAGCACATG 4370470 37 100.0 35 ..................................... AAGCTGGGGGTGGGCAACGATGCAACCCCTGATTT 4370542 37 100.0 35 ..................................... GAACCCTAAGCTCGCCGAACAGATCCTGGCGGGCG 4370614 37 100.0 34 ..................................... AGAACCTGGTACACCGTGGCGGGGCCGTTGCTGG 4370685 37 100.0 35 ..................................... AAACGCTCGGCCAGCGCTATCTTGCGCATGCACTT 4370757 37 100.0 36 ..................................... CTTTGCCTGTAATAGCCTTCTTTAGCGCGGTAGGAG 4370830 37 100.0 36 ..................................... CTTGACCCATAGCTGGTCGCCGGGCTGGCCGTAGGG 4370903 37 100.0 36 ..................................... ACCGGCAATGGCCAGCTGATTCCGGCGCTGGACGCC 4370976 37 97.3 35 ............G........................ GTCACTGTCCCCTTGGTGAGGCAGTTTCGCCGTGG 4371048 37 100.0 7 ..................................... GTGAAAA Deletion [4371092] 4371092 36 75.7 7 TC..GA......GC.....-AT............... GTGAAAA G [4371106] Deletion [4371135] 4371136 36 75.7 0 TC..GA......GC.....-AT............... | G [4371150] ========== ====== ====== ====== ===================================== ==================================== ================== 81 37 99.4 34 GGATCGCCCGGCATTCATGTCGGGCGCGGATTGAAAC # Left flank : GCTACGACGTGAGTACCGAAACCAGGGCCGGACGGCGGCGCTTGCGAAGGGTTGCCAAAGTTTGCGAAAGTACCGGGCAGCGGGTACAGAAATCGGTTTTTGAGTGCCAGTTGGACGTTGCTCAATTTGAAGCACTTGAGCGGGAATTGCTCGCAGAGATCGACGCGCAGCAAGACTGCTTGCGCCTGTACCGCATACCCGGTACCCGCGGGTTTGAAGTTCTTGAGCACGGCGCCTTCAAGGCGGTGGATTTTGATGGGCCGCTGGTGCTTTGATTGCGCCCCGAAGTGCTCGCAGACGCATGGCCTGTGGTAAGGTCAATACCGCGAACCCCAAGTGGTTGACTTCTCCCTACAGGGTTCGCGCGCTACGCAAGCCATTGATTCAAATGATTTTCCAGAATCTCTCCACGTAAATCCACGGGGTTAGTCTTGTGGAGCAACGAGGTTCGCGCGAATGCACCAAAAATGCCTTTGCTTACAAGCCTTTGGCCGCGAAGC # Right flank : CACGCCGTTGTCTTGAGTTATATCCCTGCAGGTTCAGGTCAAGACTATGTCTTGCTATGCTTGCGCCCTTTGCAGTCATTCCCAAAGCCCAAAGGAACCCTGATGAAACCAACTTTAGGCAAGTCCCTGCTGGCGAGCGCCTTGCTGGCGCTGGCCGCTGCCGCCAGCGCAGGTCTGCCGGCCGTCAATGTCAAACAAGCCGCCGCGCTGCAAAGCAGCGGTGCACTGCTGCTCGACGTGCGCGAAGCCGATGAATACGCGCAGGGTCATGCGCCCGGCAGCACGCTGATCCCGCTGGGCCAGCTGGCGCAACGGCTGAAAGAAATCGCGCCCTTCAAGAACCAGCGGGTGGTGCTGATTTGCCGCTCCGGCCGGCGCTCGGCGCAGGCCACCGCGCTGCTTGAGACGGCAGGCTTCAGCGCTGCCTCCAACATTGAGGGCGGCATGCTGGCCTGGCAACAAGCCGGTTTGCCGGTGCTCACGGGTGCCGCTTCGCGCTA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCGCCCGGCATTCATGTCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.40,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 109569-111086 **** Predicted by CRISPRDetect 2.4 *** >NC_007901.1 Rhodoferax ferrireducens T118 plasmid unnamed1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 109569 30 96.7 32 .T............................ TGTGGCGCGACTCGTACTGATCTGATCAGTAA 109631 30 100.0 32 .............................. AAACGCTGGGTCGCCAGGGCGGCTTGATACTT 109693 30 100.0 32 .............................. GCGATTTCAGAACCTCATCAAGACAGGTTTTC 109755 30 96.7 32 A............................. CACAACCGCATCACAGTGACTGGCGCCTATTA 109817 30 100.0 32 .............................. GACAACCTGTACTGGCTTGGGACCAAGCCCAA 109879 30 100.0 32 .............................. TTGGACACTTGACCTGTGCCTCTGTACCTTAC 109941 30 100.0 32 .............................. CTCAGCTGCATGCCTCAATAGAGTTGCCATAT 110003 30 100.0 32 .............................. CGCAGTGTCCACCAAAGGGATGATCTTGCCTA 110065 30 100.0 32 .............................. AAACAGCGTGACTGCCAATTGGATATTGTCGA 110127 30 100.0 32 .............................. TTTGTGGTCATCGCCGTCCCTCTTCCAACACC 110189 30 100.0 32 .............................. CCACAAAACTTTCAACAGTCACATCATCATTC 110251 30 96.7 32 A............................. CCTCGCCAGTTCTCTGACTTCCTGCACAGCTA 110313 30 100.0 32 .............................. AGAAGAAAAGTTGGGATCGGCGAACACAATGT 110375 30 100.0 32 .............................. GGCTTTCGCGTGTTCTTACGCCCATCGGACTC 110437 30 96.7 32 ..........................A... TATGCAGGTGTCTACGAAATCGACCACACGTT 110499 30 100.0 32 .............................. ACGGCGTTCTGTTGAATTATCACGAGGCATAT 110561 30 96.7 32 ...............G.............. CGCTGTGGTTTCAGCAGGACCGGTGGCGCATC 110623 30 93.3 32 .......................A...A.. GCCATGGCGAAGCATGTGGACGGTGCTGCCCT 110685 30 96.7 32 .......A...................... CGTGGCCAAGAACCGTTGCGCCACCAGTCTAG 110747 30 100.0 32 .............................. GCCTGCAACCGGGTAACCACTGGCTGCCATTA 110809 30 96.7 32 A............................. CTTTGGCGCGTGACAAATAGGCGGAAAGATTG 110871 30 100.0 32 .............................. GAAGTAGTTGTGAAGAATGGATGGCTCGATTT 110933 30 100.0 32 .............................. GGCGTTTCTATATGGTGTGTCGACTGGTTTTA 110995 30 100.0 32 .............................. CTCAACCCGGCCACAGGACTCTTTGGTGTCTT 111057 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 25 30 98.8 32 CCTTCAATCCCCGCGCAACGCGGGGCGCAC # Left flank : ACGCTTGCGTTGGAACAGAAGAATGATCGGATCGGCGAACTCGCGCAATCTCTAGATTCTGTCCAGTCTCGATTGCAGCAGTCGGCTTCAAAGGAGGCGGTTGCAGTCACCAGGGGCAGTTTGATGGAGGAAAAGTTGCGCGCGCTTGAGGTGACCAATGCACGCCTGACTGCTGCCGAGAGTGATGAGCGTAAGAAGCGCCTTCTCACGTTGGATGAAAACCGCCAGATGGGGCTGGCGCTTGAGGCCACGAAACAGCAAAACCAGTCTCTAAACCTCCAGCTTGAGTCGATTCAAAGTAAAGCAAATGATTTGACCAAACGAGTTGAAAATGGTGAACAGAGAATAAGCGCCCTGTTGAAGAGAGTTCAAACGGCGCAATTGCCAAGCGAGCCTGCGGGCCGCCAGCGCCGAATTGGTCCTTTGCACAGGGCAATGAAGAAGACACAATTGACTAAAAAATAAATCGTGCTGGATTTTCGTGCCGTTCCATGAACACT # Right flank : CTCTGACATCTATGTTGTTGATTTAATTTGGTTTTTCAATTAGCTGCAATCCGTCGTACTCAATAATGCGCCTATCGTTGAGTCCGAGTTGCTTGAGTCGCACACCCATTGGATGTTTCTTGGACTGAGCAACAATCATTCCGACGCATTTTGATCTCTCTAGTATGGAGACAACTTCGAGCAGTTGCTTTGTGTTGACGGACCCTACAAACAGATGTGCCTGAGGTTCTAGGAAAAGGTTCCGCAACATGCCGCGCACAGATGTACTGGGTCCAACCAGACTAATCGTGACAATCATGATCCGTCCCAAAGATATTTTCAAGATGTCCAAGCAGTGTTTCAAACATGCTTTCCCTAGAGAACAAATCCCGACAACCATGCCGAACAGCCATGTTCAGGTTGGACGGACTGGTAGCTGCTATCTCAAACGCCAGCGGTACTACCGTCTTAAACTTCACCGTATCGGCTAAATCAAACACCAATGATCTCGGGTTCCCGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCAATCCCCGCGCAACGCGGGGCGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //