Array 1 75115-75482 **** Predicted by CRISPRDetect 2.4 *** >NC_011978.1 Thermotoga neapolitana DSM 4359, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 75115 30 76.7 36 AGGGTT...............T........ CGAAATCGTGGTTTACTTCCAGAATGCCGGTGGATT 75181 30 93.3 39 .............A.......T........ GTGCTGTAATAGGATTTTTCCTCAGAAAGAAACTTTTTG 75250 30 93.3 37 .............A.......T........ CAAAAGAGACTTTCCCCAACCACTCTCCAAACCAGAA 75317 30 100.0 36 .............................. TTGGAAACTTGGGAAGGAGGAGTCTTGTTTGGTTTA 75383 30 100.0 40 .............................. CAAGAACGAATCGATGCCGTATTCGTTCCGTGTCAGAACG 75453 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 93.9 38 GTTTCCATACCTCTAAGGAAGGATTGAAAC # Left flank : CCAGAGCCCTTCCACAGTGCAGGAACGTCCACAACAGCAGTTTCCACAGGAACGTTCCATTGACGACAGATGTCTTCTACGAATTTTCTGTCCCTTTCTGAACTTTCTCTTATTCTGTGATCGAGATGAGCACCCAGAACTTCGATCTTCAAAAGGGGGGAGAGTTTCTTCAGGATGTACAGGAGGGTCATCGAATCTATTCCACCGGAGACGGCAACGAGAACAATGTCACCTTCACCGATCAAGCGATTTTCCTTCACGAATTCTAGGAACCTTTCCTCAAATTCTTCGGTAATGTTTCACACCCCTCTATGAAAAGAAATGGAGCCAGCGGTGGGACTCGAACCCACAACCTGCGCATTACGAATGCGCCGCTCTGCCGGTTGAGCTACGCTGGCCTCCCTCTAGTTTCTATTTTACCAGCAGGTGGGAGAATTTCAAGACCGGTTGGTAAAAGATTCCCCAGTGAGAGTATGGGGAGATAATGAATGTTTTTCAAA # Right flank : CCGTTGGATTTCAAAGAAATTATACCACAAGGCATTTCAAAAAGCAAGAGTACATGAGAACATACAGAGGGTGTTTCATCACAGGTGATTCTAACACACAGAAAGATTCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAATGAAAAGCCTAAAGAAAGACAAAATCAAAAGATAAATTATCCTAACCTAGGTCAGGGCATTTTGGAGTGTTTCAAGGGAAAACCGTCTAGTTCCTGTTTTCACAAGTTTGTTCAAAAAGGTCCCCCTTAAAAGGTTAGAGACTAAGTGTGTGGTTTCTTTATTCATGATAGATACATAAACACAGATGAAGACATATTCTCATATCATGTTTCACATTCTCGCTCATTATTCCATTTTCCATGCATACATCACCTCTCTCAAACCCGCATGAATTTTTTCGTTACCGGTAATTGCATACTCTGTATCACACATCCAATGCCAGTTACAATCACCACCCACCTTGTGAAT # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGGATTGAAAC # Alternate repeat : GTTTCCATACCTCAAAGGAAGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 2 272187-271825 **** Predicted by CRISPRDetect 2.4 *** >NC_011978.1 Thermotoga neapolitana DSM 4359, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 272186 30 93.3 36 ....T........A................ GAGGTGAAAAGAAGGCTGTCCTCTACCCCCTCCAGT 272120 30 100.0 37 .............................. GTATATCACAAAAAGGCAAAAAGAGCAGAACTCACAA 272053 30 100.0 37 .............................. CCAGAATTATTTCATCAGAAACACCAACCAATTTTTC 271986 30 100.0 36 .............................. CAGACTCGCTTTGAAAATGCACGGCTTTGACGTGGA 271920 30 100.0 36 .............................. ATGTCTCTACCGCCACTCCGTCTGGAACAATTCCTG 271854 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.9 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : ATCATGCTGGTATCCGTTGTTGAAAGAACAAGGGAAATAGGCATAAAGATGGCAATAGGTGCCTCAAGGATCAGAATTCTCATGGAATTTCTTGTGGAAAGCGTTGTTATCACCTTCGTTGCCGGTGCTATAGGAGTTGCCCTGGGAATACTTGGATCAAACACGATCGTCAACACCTTTGGAAGCTCCTACGGATTGAAAGCCTTCGTTGATCCCTTTTCTGTGATCATCGCTTTTGGTGTCTCCGCGAGCGTTGGGTTGTTCTTCGGGTTCTATCCTGCATACAGGGCCTCCAGACTGAGCCCAATAGAGGCTTTGAGGTACGAATGAACCTCCCCCTGCACTCAACATGGGTGCAGGGGCTTTTAAACAAACCGAACCTTCCTGATGAATTTTCCCCACAAGAGCATTCCCATCTGATTGTGAGGATTTTCTTACCGTTTCCATACCTCAAGTATTGAAACATTGCGTACAAGGCCGGGTTGGTGGGAAATATTCAT # Right flank : CCGTTGGATTTCAAGGGAATCATACCACAGAGCATGTCAGAAAGCAAGAGTATATGAGAACATACAAAGGGTGTTTCATCACAGGTGATTCTAACACACAGAAAGATCCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAATGAAAAGCCTAAAGAAAGACAAAATCAAAAGATAAATTATCCTAACCTAGGTCAGGGCATTTTGGAGTGTTTCAAGGGAAAACCGTCTAGTTCCTGTTTTCACAAGTTTGTTCAAAAAGGTCCCCCTTAAAAGGTTAGAGACTAAGTGTGTGGTTTCTTTATTCATGATAGATATATGATGATAGATGAAGACATATTCTCATATTCTGTTTCACTTTCTTGCTCATTATTCCCTTTCTCTTGCATACATCACCTCTCTCAAACCCGCATGAATTTTTTCGTTACCGACAGTTGCATACTCTACATCGCACATCAGAAGCCAGTTACAATCACTACCCACCTTGTGAAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 3 311328-311756 **** Predicted by CRISPRDetect 2.4 *** >NC_011978.1 Thermotoga neapolitana DSM 4359, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 311328 30 86.7 35 C............T...A...G........ TTGACATTGTCAAAAGAACGTGGCACTAAACAACG T [311333] 311394 30 96.7 36 .............T................ GATTAGTTTTTACCATGTATTGGTAATCTTGTCAAT 311460 30 100.0 39 .............................. GGGAGTCCTACGTTGGATATCCACAGACGGCAGAGTACA 311529 30 100.0 37 .............................. GTGGAGAAGGCTTTTATCTCAATGGATATCGTTGGTA 311596 30 100.0 36 .............................. CGCGAAAGCAAAACTCCACGCCCTCAAAGCGCCTTT 311662 30 100.0 35 .............................. TCAGTTCGAACACAACCTGGCGACGTTTGTCTCGT 311727 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 97.6 36 GTTTCCATACCTCAAAGGAAGTATTGAAAC # Left flank : ATCTCTTTCACAATTTCGGATATACGTTTTCCTGTCTTTATTTCCAGTCCCTTTGAGAGATTCAGAACCATCGAAGGTTTTTTCGAAAGCCTGGAAAGATGTTCCCTTACGTGCTGCACAGGGATCGCTATCACGAGTATGTCGGTGCTTTTCAGTTCGTCGAGATTGTTCGTCGCTCTGACAGAGATTTCCATTTCATCTATGTAAGGACTGGTGTGGGAGTTGTTTATAAGATCTGCGATTTCCTTTCTTCTTGCCCACAGAATCACTTCTTCTCCGTTTTCCTTTAAAAGTTGAGCAAAGACTGTCCCCCAACTTCCAGCCCCGAGAACGAAAAATCTCATCTTTCAGCCTCCCTGAACACTTTCTATCTGGAATTTTAACAGATTGAAGTATTGAAACAGGATATCCCATACAGGGAGCAACACAAGGAGGGTATCGAAACATGGATTTGCAGTATGCGTGGGAAGGATTTTCATATCTCTTTGGAGCAACAAAAT # Right flank : CCCGTTGGATTTCAAAGAAATTATACCACAAAGCATTTCAAAAAGCAAGAGTATATGAGAACATACAGAGGGTGTTTCATCACAGGTGATTCTAACACACAGAAAGGCTCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCATAGAAAGCCTAAAGAAAGGCAAAATCGAAAGATAAATTATCCTAACCTAGGTCAGGCCATTTTGAGTTGTTTTATGGGAAAATCTACTAGTTCTCATTTTCACAAATTTGTTTAAAAAGGTACTCCTTAAAAGGTTAGAGACTAAGTACGTGGTTTCTTTATTCATGATAGATACACGATAGAATATGAAGAAATATTCTCATACCCTGTTTCACATTCTCGCTCATTATTCCATTTTCCATGCATACATTACCTCTCTCAAACCCGCATGAATTTTTTCGTTACCGGTAATTGCATACTCCGTATCGCACATCAGGAGTCAGTTACAATCACCACCCACTTTGTGAA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCAAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 4 705247-704816 **** Predicted by CRISPRDetect 2.4 *** >NC_011978.1 Thermotoga neapolitana DSM 4359, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 705246 30 83.3 36 ..AAT.........G....T.......... TGCTAATTGTAAAAGAGAAGCCTGGCTCATGGCTCA A [705244] 705179 30 96.7 35 A............................. AGAATTCCCAAACGCTTACTTCACGCAAAGAAAAA 705114 30 100.0 40 .............................. TCGGTGCCGTCATGTCCTACCATATACGACAGTGTCCTTT 705044 30 100.0 36 .............................. GAGGTGGAAAGAAGATCAACCCTCACCCCCTCAAGA 704978 30 100.0 36 .............................. AAGGCAACGTTCTGAGATTCACACTTACACGAAACA 704912 30 100.0 37 .............................. GAGTTCGAGGTTTGCTCCGGCACCGTGAGGAACTACG 704845 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 7 30 97.1 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : ATCTATCCTTTTCTGCCCTTGTTAAAACAGCGCTTCCCATGATTTTAAAGGTCACCGTTTTGGATGTTATGATCTTTGGAACAGGAAGATCCACACCTGCAACCTTCAATCCGTTCATGATTGAATCCTGCGAAACGATGTAGTTATATAAATAACCCACCATCTGGGGAATAGAGGAAGAAAAATTAAAAAAAATAGGAGACTCAAAGATTATCGAGTCTCCGGAGATATCTTTTATTTTGTTGAAACCAACACTGAAGACATAGGGTTTTGGTATTCGATCGTGAGAATTAACAATTTCTTCAAACGGTGTACGCTTATACACTTGCTTCAATAGAGACATAAAGATTCTTCTGTAATCAGCAGGAAATTTACCCTCAGAACCACTTTCGGGCTGGATTTTAACGAATATTCTCATATTCAATCCCCCTGCCTCCCCCGGTACAACAGGATTAGGGATGAGGATGTTTTGAGGTCAGAGCACAGGATACTTTTGGTGG # Right flank : CCGTTGGATTTCAGAGAAATTATACCACAAAGCATTTCAAAAAGCAAGAATATATGAGGACATACAGAAGGTGTTTCATCACAGGTGATTCTAACACACAGAAAGATCAAGTCAAGTACTGTTTGGAAAAATGGAATAATTACATAGTCAATAGAAAGCCTAAAGAAAGACAAAATCAAAAGATAAATTATCCTAACCTAGGTCAGGGCATTTTGAGTTGTTTTATGGGAAAATCAACTAGTTCTCATTTTCACAAATTTGTTCAAAAAGGCACTCCTTAAAAGGTTAGAGACTAAGTGTGTGGTTTCTTTATTCATGATAGATACATAAACACAGATGAAGACATATTCTCATACCCTGTTTCACATTCTCGCTCATTATTCCATTTTCCATGCATACATCACCTCTCTCAAACCCGCATGAATTTTTTCGTTACCGACAGTTGCATACTCCGTATCGCACATCAGGAGTCAGTTACAATCACCACCCGCTTTGTGAAT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 5 713422-715292 **** Predicted by CRISPRDetect 2.4 *** >NC_011978.1 Thermotoga neapolitana DSM 4359, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 713422 29 100.0 38 ............................. GCACAAATGTGTGTGTGTCGGCGTTTTTGTGGCGCCAG 713489 29 100.0 36 ............................. GAAACTGCCCACGCCGTACCAGAGCGTTGGCGCCAG 713554 29 100.0 36 ............................. GGGGATTACTCCCCGCTAAACTCTACCGCTATCCAG 713619 29 100.0 36 ............................. AAGCCATCAGGACAGAAATAGACACGATAGCGCTCA 713684 29 100.0 38 ............................. ATGACATTTATAAACTATTTCATTCCAGGGGATTACTC 713751 29 100.0 37 ............................. AGCTCTTTCGATGCGACAGTCGGCGAGTATGGAGTGT 713817 29 100.0 36 ............................. CTCTACCCTCAATTAAGATCGACTGTCACATATCAA 713882 29 100.0 37 ............................. TTGTAACCAGCCACGGCGATCTATCTGCCCTGTGAAA 713948 29 100.0 37 ............................. CAATCTAGAAGGAGGGGATTGAGATGGTCAAGTATGA 714014 29 100.0 36 ............................. ATTCACAACTATATCTATGTGTTCGAGTGTAATCTC 714079 29 100.0 38 ............................. AAGATAAGAATCTTCACCTTAAATCTCCTCCCACACCA 714146 29 100.0 36 ............................. GGCGACAGAAGCCGCCAGTGTCGTTTGCAAACTGCG 714211 29 100.0 36 ............................. GTAGGGAAGCTAGAGGTGGTAGGATGAGTGAATGGA 714276 29 100.0 38 ............................. CAATCTTCTCTAACTCATTGGCGTTCTGAAAGATTTCA 714343 29 100.0 36 ............................. ATCTAGATAGAGGACATTTATAGGGTCTCGTGTTTT 714408 29 100.0 37 ............................. CGTTCTGCAGGGGGTCTTTTTCAATCTCCCTGTCCAG 714474 29 100.0 39 ............................. CTATATGGACAGACTCCTATATCCGCTTCCTGTATGAAA 714542 29 100.0 38 ............................. TTCCTCCCTTACCTCATCGTGATGCGCACACCTTTCTG 714609 29 100.0 36 ............................. TTTTCTTGAAGTCTTCCTCTACTCTTTTTTTATATC 714674 29 100.0 36 ............................. TGATAAAAAAGGAGTTCGTTGAAAAGCTGATGAAAA 714739 29 100.0 37 ............................. CTTTACCTCGTGATGAAGGCGGGGGTAGGTATATCCG 714805 29 100.0 36 ............................. TCTATACAATTTTATCTCTTTGAGGGTGTTGGCGCA 714870 29 100.0 36 ............................. TGTCTTCTCTCCTATCCGCCTGCCGTTTTTGGGAAT 714935 29 100.0 38 ............................. TGCTATCACTTCCTTACCTCTGTATCTCGTACTCGATC 715002 29 100.0 37 ............................. CTTGAGAAGGCTGCTGCACAGGCTGACGCATGGATCG 715068 29 100.0 36 ............................. ATGGTCGGGTCATTCCCCTCCTTGTCTCTGAACAAC 715133 29 100.0 36 ............................. CAGAACTCCTTCCACCTGTTCACCGCTGCTTTGAAC 715198 29 100.0 36 ............................. TGCGGTGTGATAGGTCACACTCCCACCTCACACAAC 715263 29 93.1 0 ..........................T.G | A [715288] ========== ====== ====== ====== ============================= ======================================= ================== 29 29 99.8 37 GTTTTTATCTTCCTAAGAGGAATATGAAC # Left flank : GCTTCAACAAACCATTCTTCACAGGAAATTGAAAAGGAAAATTAAATATCAATCTCTCATAAGGCTAGAAGCATACAAAATCATAAAGCATTTGCTTGGAGAGGATGAATACAGGCCTCTTAAAGTGTGGTGGTGATAGTGGTAAAGGTTATACTGGTCTATGACATTTCAACAGAGACCAAGGAAGGTGTTAAGCGTTTAAACAAGGTGAGAAAAATTGCCAGGAGGTATCTTGACCATATACAGAAATCTGTCTTTGAAGGTGAACTGACAGAAGGAGAGGTCGAGAAATTGAAATTCGAATTATCATGTGTTATAGATAAGAACGAAGATTTCGTAATAATCTATAAAATGCCGCCTTCCATTATGATGGAAAGAGACTTTCTAACGAATACAGAGGATCCCTCCTCGAATTTCATCTAGACAAAACTGGAGGTTTGACGCAAAATCTGTTCAAAAGAATGGTTGTTTCATGCTTTTTTACTAAGAAAATAACTGCG # Right flank : GAATGGTGGAAAAATGCCAACTGTTACTCTATTCCTCACAAACAGCATACTAAAGCAATATTTTCTGGTTCATCGTTTTTGAAGATCCAGAAAGACCGATCGGAAGTTCGGAAAAAAAGAATATAAGGGAAAGATTCATAGAAATGCTCAAAACCTATGGGCTGGGTGCGAAGACGAATTATGGATATGGCCGATTCGATGATATTTTATGATAAGATTTAAAGAAATTGTGATACAATCTCAGGTAAGGATTCCGAACTTTTTGAGATCTCGAAGAGAACGTGCCACGAGCCTGGAAGGCTCTGGCCGTTCTTTTTTTTAGGTGGGGGGAACATGAAAAACGGACGCTTCGAGTTCTTGAAGAGGGTCTTGGGTTCCATTCAGAGTATTCGAGGGTTTGTCCTTTTTGAAAGTGTGGGCGGAGAACTTTCTGTGAAGACGTCGGTTGGGAAGGTGCCCCTCTTTTTCAAAGAAGGTTTTTCTTTCACAACGGATGAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTCCTAAGAGGAATATGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 961163-961392 **** Predicted by CRISPRDetect 2.4 *** >NC_011978.1 Thermotoga neapolitana DSM 4359, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 961163 30 100.0 37 .............................. CTTTATCAGATGATCAAAAGGCTTGAAAAGGAGGATG 961230 30 100.0 37 .............................. AGTCCAGAGCCAGAGCCATCCACGTTCTGGAGTTTTG 961297 30 100.0 36 .............................. CCGCATAGTCCAGGTCAGAAAACGGCCCTCCGATGG 961363 30 96.7 0 .............A................ | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : TACGAATGCTCTATGAGATCTTCTCTATCCAGAAACCTCTCCAGTTCTCTGGAAAAGAGTTCGCAGTCTCTCACACTCACGTATCCCACCGGGTTGTCTATAACGACCCTGAGGACCCAGCCTCTGCTTTCTCTTCTGTACTGTATGTCGAAGATTTCCAGGCCTTGCTTTTCAGCAATTCTTTCCGCTTCTTTTCTAACCTTTTCTACAATCATCTCTTCGAACATACTATCAACCACCCCCTAGTGAACGAAAAACCGGGACACGAAGTCCCGGCCTTTCTCTGGCGGAGAGGGTGGGATTTGAACCCACGGGTGGCTTTTGGCCACCACACGCTCTCCAGGCGTGCGCCTTAGACCCCTCGGCCACCTCTCCTCTCCGTACCAAGAAAGTATTATACACTTGTTTTTTCAATAATTCAAGAGGAGCGTGTTTGTTTTTTTAATTTCATGCATTTGAAAGGAGAACCGAACAGAAAGATTGAAAAATTTCTATACTTT # Right flank : CCCGTTGGATTTCAAAGAAATTATACCACAAAGCATATCAAAAAGCAAGAGTATATGAGGACATACAGAAGGTGTTTCATCACAGGTGATTCTAACACACAGAAAGACCCAGTCAAGTACTGTTTGGAAAAATGGAATAAGGGAGCCTAGGTCAGGCTATTTCGGTGTGTTTTATGGGAAAATCAACTAGTTCCTGTTTTCACAAGTTTGTTTAAAAAGGTACTCCTTAAAAGGTTAGAGGCTAAGTATGTGGTTTCTTTATTTGTGCCAGATACATGAACACAGATGAAGACATATTCTCATATCCTATTTCATATTCTCGCTCACTATTCCATTTTCCATGCATACATCACCTCTCTCAAACCCGCATGAATTTTTTCGTTACCGGTAATTGCATACTCCACATCCTTCTTCTCATGCCCGTTACAATCACCACCCGCTTTGTGAATAAATGGAACTTACCGTGGTTTAGTGAATAAAAAATAGTTGCTAGCATCTTA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 7 1152422-1152061 **** Predicted by CRISPRDetect 2.4 *** >NC_011978.1 Thermotoga neapolitana DSM 4359, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1152421 30 96.7 36 .............T................ CAAGATACGAGATTTTCTTGTGCTCCTTGTCTCCCG 1152355 30 100.0 36 .............................. CGGCGGAGCTGTTGACAAGATTGACCGGGATCGAAA 1152289 30 100.0 36 .............................. TTACGTTATGCCCGAGATGTCATAATCGGGCTCATA 1152223 30 100.0 37 .............................. GTAGATGCAAGGCTCAGGTTTGCCTCAAGAATAGGAG 1152156 30 100.0 36 .............................. GCTCACATATGCCTTCACAGGGTATATCTGATTCTC 1152090 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 99.5 36 GTTTCCATACCTCAAAGGAAGTATTGAAAC # Left flank : TCACGGTACTTCAGGGGTTTATAATTCTGTTTTTCACGTACTTTCTGGCGGAGAACCTGAAGATCTCCGGTCTGATACCGGCTCTCATCGTCGGTTTCCTCATGTCCGTTACGATCGCCAGCTTTGGCATAGCACTCGCCCTGAAAATGGAAAGCACAGAAGGTTTTCAGATGATAATGATGACACTGATGATGCCTCTGATATTCCTGAGCGGAGCCATGTATCCGATAGACTCCATGCCGAACTGGATGAAAGCGATCGCCTACATCAACCCACTGACCTATGCGGTCGATGCCTCAAGAGGTTACCTGGTTGGATCACACGTGATGAAGTTTTCCTTTGGAATGGACTGGGGCATTTTGAGCATACTGATGGTCGTGGGACTTCTTCTTGCAACAGAGAGTTTCGAAAGGGCAAGGATAAGTTGAAAACGATCTTTCAGAATAAACAGAGGCGGGGATTTCCCCGCCTTTTTTGTTTTTGGGTGGTTTTCATACTTC # Right flank : CCGATGGATTTCAAGGAAATTATACCACAAAGCATATCAAAAAGCAAGAGTATATGGGAACATACAGAGGATATTTCATCACAGGTGATTCTAACACACAGAAAGACCCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAATGAAAAGCCTAAAGAAAGACAAAATCAAAAGATAAATTATCCTAACCTAGGTCAGGGCATTTTGGAGTGTTTCAAGGGAAAACCGTCTAGTTCCTGTTTTCACAAGTTTGTTCAAAAAGGTCCCCCTTAAAAGGTTAGAGACTAAGTGTGTGGTTTCTTTATTCATGATAGATATATGATGATAGATGAAGACATATTCTCATATTCTGTTTCACATTTTCGTTTACTATTCCATTTTTCCTGCATACATCACCTCTCTCAAACCCGCATGAATTTTTTCGTTACCGGTAATTGCATACTCCGTACCCTTCTTTCCATGCCAGTTACAATTACCACCCACCTTGTGAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCAAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA //