Array 1 152788-153939 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAFFHH010000001.1 Streptococcus suis strain ZJNB072 Scaffold1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
    152788	    32	 100.0	    34	................................	ATTTTTTGTTAACACTGCTTTTTCCTCTCGATCA 	
    152854	    32	 100.0	    34	................................	TTGTAGCGACATTTGGTCACTCGCATGGCATCGT 	
    152920	    32	 100.0	    34	................................	AAAAGATGATGGATCATATTCCTATTTGCGTCAA 	
    152986	    32	 100.0	    35	................................	AGAGGGTGTAGAGTTGATGGACTCAGTACCCTCAA	
    153053	    32	 100.0	    33	................................	TTGCTCATGAGAGACATATAGACTGACGGACTT  	
    153118	    32	 100.0	    35	................................	CATAAGGAATACACAAAATTTACAAATGCGGAGGA	
    153185	    32	 100.0	    33	................................	ATGAACACTATGACCTCAGTTAATAGTGAGCAG  	
    153250	    32	 100.0	    33	................................	TAAAGACTATCTCATGAAACATGGCTCGTATGT  	
    153315	    32	 100.0	    32	................................	AAAGCTGGTGCAAAATACTCCAGCACATTCAC   	
    153379	    32	 100.0	    35	................................	ACGTCGCTTCTCTACATCCATGGTCATTGATTAAC	
    153446	    32	 100.0	    35	................................	CACAAAATCGCTTTTAGATAGCCTATGAAAAAGTC	
    153513	    32	 100.0	    35	................................	GTACTGTCTGCTTGGGTATAATCTGTAAGAGTGCC	
    153580	    32	 100.0	    34	................................	TGCAAACATGGAAGCTACACGTAACTCAGCCTGT 	
    153646	    32	 100.0	    33	................................	TGCTGAGATTGACTTTCAAACTTTCCTAAACCG  	
    153711	    32	  96.9	    33	........................G.......	ATTCAGAGGAACAGCATCTTTTGCATCTGCATT  	
    153776	    32	  93.8	    33	.........C..............G.......	CTTGTCCAGAGGGTAAGACACTGAAAGGAAATT  	
    153841	    32	 100.0	    33	................................	TTATCTCGATACTAACCAAATAATTGCCAACAA  	
    153906	    32	  87.5	     0	.........C.............AG......C	|                                  	C,T [153912,153935]
==========	======	======	======	================================	===================================	==================
        18	    32	  98.8	    34	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                   	       

# Left flank :   GCAAAGGCTATTCGAGGGGAGTTGGACAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACGGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGATTTTGGTCAACGTGTGCAACATTCTGACTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGATAAGGAGCAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACGAGATACTAGTTATGATCCTGATCAAGGAGTCCTTCTGTTGTAGATTATCTCTGCGAATCGGACTTACTCATTAAATGTGGGGAGATTCGCGTGAAAAGCATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTCTATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCGCT
# Right flank :  CAGCAATTGGATTGTTTTTGCAATCACTTAAGATTCTATTTTCAATGAGAGCATCTAATTTTCCTCCAAGATTTCCTCCAAGATTTCTAACTCCCTCTTGTCCATTCAAAGTTTTCCATGATATACTATATGTAATCGTTTTATTTCAAAGGAGACAAGGATGACAAACTTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGGCTGACGGCATGATTGTTGGGCTAGGGACTGGCTCGACGGCTTACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAGGAGGGCTTACAAATCACAGGCGTAACGACCTCTCATGCCACGGCTGAGCATGCTGCGTCCCTCGGGATTCCCCTAAAAAACATCGACGAGGTTGATCACGTGGACTTGACGGTGGACGGAGCCGATGAGGTGGACGGAGCCTTCAATGGTATCAAGGGAGGCGGTGCCGCACTGCTTATGGAGAAGGTGGTCGCGGTCAACAGCAAGGACT

# Questionable array : NO	 Score: 9.20
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.90,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.41,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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