Array 1 70482-70936 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657742.1 Streptomyces sp. SPB78 supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================================== ================== 70482 28 82.1 216 .C.A........CC..........T... GGGCCGCCGGGCGATCGAGTGGACCCGCTACCTGTCGGCCCTGCGCTGGTAGGGATCAGTCGCGCAGCCGAGCAGCTGTCGGGGGTTACGGTGTTGACGTGGAGGGTGAGAGCTGGTGGGGTCAGGCGGTTGTTTCTGTTCTGGGCTCAGCGGTCGGCCGGAAAGCGACTGAAGGAAAACTGGCAGACCGGCTGGTATGACTGCAGGTCAGCAAGT 70726 28 100.0 33 ............................ GCCCTGAGGCGGGCCTTCTTGATGACGAGGTGG 70787 28 100.0 33 ............................ GCAGGCGGGCGCCCGCCGCCTCCGCGCCGCCGT 70848 28 100.0 33 ............................ TGCCTGGGTGTGCGATTTGGGCGGTTCGTCTGG 70909 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================================== ================== 5 28 96.4 79 GTCGGCCCCGCGAGCGCGGGGATCCTCC # Left flank : GACGCAGACCCAGTTCGCCGAGGATTCCGGGGGCAAGGGCTGGCACCGCATCACCGGGTCCATCCGGGGCAAGGTCCGCACCACCGCGAAGAACGACTCGACGTTCGGGCTGACCTGCAACAAGCGCCCGAAGAAGCAGCACCCTTACCGGCTGGAGGCGCGCGGATACGCCACGGCCGACGACGGGACCAAGGTCAAGGGGTACCTGGAGTACGGTAAGGACTCCAAGTGGAAGTGCCGCTGACAGGAGACCCGCCCATGAGCGGCTTCGGATACACCCCAGCCGACCCCGCCACGGGAGAGCCCGCCCGGTTCAACGGATGCATCCCCCTGCCGGGCAACGTCGAGCTCGTAGACGACATGAGCGACATTGCCCTCAAGGACCGCATGCACGGTTTCCTCTTCGACGACGAGGACGGCGCGCCGCAGGCGGCCTGAACCCAGCCGCAGGCCCGTGACCGGTAATCGGCTCGGGCTGCGCGACCCCACGGGTCCTCTCC # Right flank : CGCAGACTGATATCAGAGGGCGGAATGAGAGTACATGGGAGTTTTGTCGTCGCCTGAGCGTGTGGCGGTGGGGCATCCCGGCCGTTCGGTGGTCATTGGCATGTTGGGCTGGCCGCCGTGAGCGAGCGCGAGCCCTACAAGACCGACGTGAGCGACGAGCAGTGGGCGCTGGTCGAGCCGGTGATCACCGCGTGGAAGGCCGCGCATCCCTCGGTCAGCGGCCATCAGGGCCGATACGCGATGCGGGAGATCGTCAACGCACTGCTCTACCGGGGCCGGACCGGTTGCCAGTGGGACCTGCTCCCGCACGACTTTCCGCCGCCCGGCGCGGTGAAGTACTACTTCTACACCTGGCGTGACGACGGCATCGATCAGACCATTCACGACCTGCTGCGCTGGCAGGTGCGGGAAATAGCGCGTCGGAAGGCGGACCCGAGCCTGGTGGTGCTCGATACCCAGAGCGTGCACGCGGCGGCTGGAGTGCACGCGCAGACGACGGG # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-3, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGAGCGCGGGGATCCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGAGCGCGGGGATCCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 270735-270586 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657742.1 Streptomyces sp. SPB78 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 270734 29 96.6 32 ............................G CTCGGCCAGGTCCGGGTGCCGTTCGAGCTGTA 270673 29 100.0 30 ............................. CAACCAGGATCCACCCCAGACCCCTTGGAG 270614 29 69.0 0 ACGTACGG.C................... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 88.5 32 GTACGGCCCGCGCGCGCAGGGGATGACCC # Left flank : CCGGCCGGAAAGTACGGCAGAAGGCCGGCCTCAACAGGGCGATCCTCGACACGGCCATGGCGGAGACCCGCCGCCAACTCACCTACAAGACTTCCTGGTACGGCTCTCAGCTCGCGGTCCTCGACCGCTGGTGGCCGTCCAGCAAGACCTGCTCCGACTGCGGATGGCGAGACTCAAGCCTCACGCTGAGCGAGCGGGTGTTCCACTGCGCTGTGTGCGGCCTGAAACTGGACCGCGACCTCAACGCGGCCCGCAACATCGAACGGCACACCGCGGCACAACCCACGCCGCAGCAAGTCGCCTGGGGTAAGAAGGGGGAGACTCAAAACGCCCGTGGAGAGCCTGTAAGACTTCCCCGCCCCCGGGCGGGGAAGCAGGGCCCAGCGAAACGGGAAGACGCCCGGCTCAGCCAGGCGCCACCTCGGCGGGGCAACCCGCCGACATCCCCGCAAGCGCGCAAAGAGAAAGCAAAGCCATCCTGAACGTGCAGGTCAAAAAGG # Right flank : AGCAAGGCCCAGTCGGCGGTGACGCGCTGTCCTTCCGGTGGAGTCCTGCAGCGGCCCGGGGCGTGCGCCCGCCGAGCGGCCGGCACCGGAAGACCTGGGAGAGGTGCTCGATCGGGTGGTTCCGGGGCCACCGGTATGCCGCGGAACGGAGGACCGCGTCGGCGCAGGGGCGGCGAGGTGCTGGCCGCGGTCATCCTCGGGACGCGCCGGGACCAGTCGCCACCTGATCACACCGATAGGCGCCTCCGCGGCGAACTTGTACGGCAGTCGGGTCTCATCCGAACGTGGCGACCAGCCGTCCGATGACCTCCCCGCGCTGGAGCCGGCCGATTCCGTCGGCGATCTCCTCGAAGCCGATCTCGGTGATGCGTGAGGACAGCTTGCCGTCGGCGACGAGATCCAGCACCGCCGCGCAGTCTTCTTTCGTCCCTGCCTGTGAGCCGACGAGTTCGACCTCGTTGAGGGTGAGCGCCTGGAGGTCGATCTCGGCGCGCGCGCGG # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGGCCCGCGCGCGCAGGGGATGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCGGCCCGGGCGCGCAGGGGGTGACCG with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3246849-3244871 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657742.1 Streptomyces sp. SPB78 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3246848 30 100.0 31 .............................. GATTCCTCGCGGACGACGGTGCCCGTGTGCG 3246787 30 100.0 31 .............................. TGCCGTTCGGTAGCCGCCGGACGGTGTAGCC 3246726 30 96.7 31 .............................A GCGCGGACGCGACGCTCGGGCTGAAGAAGGG 3246665 30 96.7 31 .............................C TCGCCACGACGGGGAAAATCACCGGGGAGCT 3246604 30 100.0 31 .............................. CTCCGGCCTGCCCGCTGTCGGCCTCCTGGTA 3246543 30 100.0 31 .............................. ACGCGGGCCGCGTCCCACCAAAGGCAGCGCT 3246482 30 96.7 31 .............................C GCACCACCTATCAGCATGCGGGGTCGTGGTG 3246421 30 96.7 31 .............................A CGCGGGGGGGCTGCGCCGGTCGGAAGGTGGC 3246360 30 93.3 31 ............................TC GCCCTCGCCCTCTACCCCCTCACCGCCGTGC 3246299 30 96.7 31 .............................A CGGCCACCTCCCTCCGCGTCAGCCTCTCCGG 3246238 30 96.7 31 ............................T. GCCTGACCTGCGTAAACCAGCACGGCTAGGG 3246177 30 96.7 31 .............................C GGTGCCCGACATCTCGGTGCGCCGCCTGTCC 3246116 30 96.7 31 .............................A CCGCCAGGCGCTGCTCCCCGCCCTCTTCGTA 3246055 30 100.0 31 .............................. ATCTGGAAGCGCGGTTCGTCAGCGGGGGAGG 3245994 30 96.7 31 .............................A TCACCTGGTTGTCCAGGACATCCATGTTCAG 3245933 30 100.0 31 .............................. ATCGCGGCGAGCAGGGCCTGGGCGCCGGGGG 3245872 30 96.7 31 .............................T TGTTCACGGTGGACTGGTCCATGTTCATGGC 3245811 30 96.7 31 .............................T CGGGCAACGGGGCAGTGATCAGTGATCCGGA 3245750 28 93.3 31 ........--.................... ACGGCCTCGGCAGCATCTCCCGCCAGGTCCA 3245691 30 96.7 31 .............................C GCGCCGCTGGGCCCAGCAGCCCGAGCAGGTC 3245630 30 96.7 31 .............................A ACTCCGCCTTCATGGCTCGGGTGGTCATCGA 3245569 30 93.3 31 .T...........................C GGGCGGCGACAACGTCTTCGGCATCGCCGAC 3245508 30 93.3 31 .T...........................C AGGAGCGGGCCAGTAGGCCCGCAGCCGTCTA 3245447 30 96.7 31 .T............................ CGAGCCTCGCCCGTCTGTGCCCGCCCGACGA 3245386 30 90.0 31 .T.....T.....................C AGGCCGCCGGGTCCTCGGGAAGCGCGAGCTG 3245325 30 93.3 31 .T...........................C GCGTCGGGAACACCGGCGGCGGCAACTCCTG 3245264 30 93.3 31 .T...........................T GGGCGAGGGCCTGGGTGAAGGGCTCCTGCTT 3245203 30 93.3 29 .T...........................C GACAACCACCTGGCCGACGCGCTGGCCGC 3245144 30 96.7 31 .T............................ CCCAGCCCGGAAGTGCTCGCACGCATTGCCG 3245083 30 96.7 31 .T............................ AGCACGCGCCGAGCGCTGCCGCCCGCGCGTA 3245022 30 90.0 31 .T.......................G..T. TGCCGCTTTTCGCGGCGGCGGGCGCAGCGAA 3244961 30 90.0 31 .T.........A....T............. CCGAGGGCATCCAGCAGTGGGCAACGCGCCT 3244900 30 90.0 0 .T.....T.............T........ | ========== ====== ====== ====== ============================== =============================== ================== 33 30 95.8 31 CCGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : ACATCGCGGTCATGCGGGCCGCCGTCGTCGCCCTGGAGTGCGCGGACGAGCCGGTGAGCAAGGCGCGGGCGGACCTGGAGTTCCACGAGGCCATCGCCGTCGCGGCCGGGAATCCCGTACTGCGGATCATGCTCTCGTCCATCAGCGGGATGATGTTCGAGATGATGCTGCGCTCGAATTCGGACCCGAGCATCGCCGAGCCGGGCGTCCCGCACCACCCGGAGATCTTCGAGGCCATCGAGCGCCGCGACGCGGAGCTGGCGGTCGAACGGATGAGGGCGCACCTGCAGTTGGGACTGCGGACGTACGGGCGGGACCTGGACGTACAGGTGGACGTGATGGCGAAGCAGCACATTGAGATGTTGTTGGGGGAGGGGCGGGGGTGAGGGGGGACGGAGGTCGGGCCGCCATGGGTTGTATGCCGGATGTTGTAGATATGCCGGAATTCGCAATTGTTGCGCGAACGGCTCCGGGGCGGGGGTAAACCCCCAGGTCGGAAA # Right flank : CGTCGTCAACGGCGCGACCCGGGGGCTGCTTCCTGCGTGCGCAGATGTAGTCCCGCCCCAGCGGAGGCGTGGTCACCAACGGCGAGCGCTCCCGGTACCTGACGGCTCCCCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3251909-3250720 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657742.1 Streptomyces sp. SPB78 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3251908 30 96.7 31 .............................C TTGTCGAGATTCACGGTTTCTCCTTTCTACG 3251847 30 96.7 31 .............................T AATCCGGATGACGGCATTGTCGGGGAGATCG 3251786 30 100.0 31 .............................. TGAGGCCCACCCACGTGCGGACGGGCGGGAG 3251725 30 100.0 31 .............................. GCCCGCCGGACGGGCCGATCGCGGGCGGTGA 3251664 30 100.0 31 .............................. GGCATGGACCGCTACACGAAGGACGTGCAGA 3251603 30 96.7 31 .............................A TCGGTACAGCGGTTATCGGTGAGAACGATCA 3251542 30 96.7 31 .............................A CGAGCCGGATACGACCGGGCTCAATGCGGCG 3251481 30 100.0 31 .............................. CCTCCAGCGCGCCGTACGCGGCGGGCAGGAG 3251420 30 100.0 31 .............................. CGCCACAGGTAGACGGGCGAGCGCAGGGTGT 3251359 30 96.7 31 .............................T CGACGCCGCCTGAGCCTGCACATCAATCACT 3251298 30 93.3 31 ............................TT AGAGACGCAACCGGCCACACTCGTCGCGGAA 3251237 30 96.7 31 .............................C AGTCGCGCACCTGCGCTTCGTCGGCGCGTTC 3251176 30 96.7 31 .............................C GCTGAGAGGTTTCCACGGCGTCTGCGCCTTG 3251115 29 96.7 31 ....................-......... GAGTTCATAGTGCCGTACGTTCCCAACCCCT 3251055 30 96.7 32 .............................C CGCGCATGTACAGCGAGCTAGCTCGCTCGGCG 3250993 30 96.7 31 .............................C GTGCGTCCGCCCGAGCCCGCAACGGCATCGG 3250932 30 100.0 31 .............................. GAGTGTCTGCACGTGCAGACAACCTTGCGAT 3250871 30 93.3 31 ........G....................C AGGTACGGCGCGGCCGTCAGTGGTACCCCAC 3250810 30 90.0 31 .........A...............C...T CGGCGAGCCCGCGCGGCCCGCGCTCGCCGCG 3250749 30 83.3 0 ...........AT.C...........T..A | ========== ====== ====== ====== ============================== ================================ ================== 20 30 96.3 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : CGGTACGGGGGGCGCGGACGGGGCTCTGCGAAGGCGCGCGGCGGGGCCCACCGACCCCCCGTACCCCGGCCCCTGCCCCACCGTGCCCCCGAGGATGCCCACCGAGCGCCCCCTGTGCCGGGATTCCGGGGCGGGGGAGGGGGGAGTGGCGCGGTGGCGGTGGCGGTGGGGATCACCGTACGGGGAATGCGGGGGCGCGTCGTGGGGCCGAGGGTTCCGGCGCCTCGGGGTGCGATCCGCTGCGTGGCGCGCGTCGTGGGGCCGAGGGTATCGGCGCCCCGGGGTGCGATCCGCTGCGTGGCGGCCCCGGGGGCGAGCCGGCTGCGGGCGGGGTGGCCGTGTGGGGGCGGGCGTGGATGGGCGTGGTCACGCGGGGGCGGGCGTTAGGCTGCGGAAGGTCCGAAGAGCTCGGGCGCCGAACCGTCTTGTCCGAAAAGCCGGACTCTCCACTTCTTGCTGAATCGACGCCATCTCGAAGGCAAAAGGGCTGCTCACGCAGA # Right flank : CTGCGGCACGGCGCCGCAGGGCGGTTCTACGCCGATCCGGGCCGTTTCAGCAGCAGTTCGTCCCCTGCGCGGAAGCGCTCGATGCCACCCTCCTCCCACGTCACCACCACGAACAGGCCACCCATCGCTCCGATGTCTGTCTTCGCCGTCTTCACGGTGCGCCACCGCCCCTCGTAGCCGATCCGGTCTCCCGGGCCGATGAGAGCGGCCACCCTGGTCGGCGTCACCGCTCCGGCTCCTCGACCCGCACGATCCGCTCCAGTGGTACGTCCCACTCGATGCCGCCGCCCGGCGGGCGCAGGAACGCCTGGCTGGCGACCAACCGGTTCTCCCTCTTGGTGCGCTCCTCCAGGACCCAGGTCAGGTATCCCGTGCGCTCCGAGATCTTGTCCCTCACCAGCGTGCCGGCCGGGTACGGCAGCGGTCCTTCGCACAGCATCGTTTCCCCGTTGCCGCTCACTCCCGACCGCCCTTGCGCAGAGCGTCGGCCAGCCGCGCAG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3497760-3495942 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657742.1 Streptomyces sp. SPB78 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 3497759 28 100.0 33 ............................ CACCGTCCGCCAGCAGCCCGCGCCGTACGACGA 3497698 28 100.0 33 ............................ CCGAAAATCACGAGGTAGCACGCGGTCGAAAGG 3497637 28 100.0 33 ............................ CGCGGACGGACTGCCCGGCCCCCAGACGTGGGC 3497576 28 100.0 33 ............................ CAGGGCGTCGGCCGCCTCGCAGGCCATGCGGCG 3497515 28 100.0 33 ............................ CGCCAACCAGTACCTCCACCGTGCTCCCGCCCG 3497454 28 100.0 33 ............................ CGCGGCGACCGGTGCGAAGCAAGTCCACCGCTG G [3497437] 3497392 28 100.0 33 ............................ CGGCGGCGGCGTCGCACTGGTTCGCGCGGAGGC G [3497375] 3497330 28 100.0 33 ............................ CAAGCTCGTCGCCAACCTGGGCAAGCTGGACAT 3497269 28 100.0 33 ............................ CGTCTACCCCATGACAGCAACCACCCGGATTCC 3497208 28 100.0 33 ............................ CGCAAGATGCAGGGTGCTGGGGACGACGCCGAG 3497147 28 100.0 33 ............................ CTGCTCGCGGTCCGCCGCCGAGGCCGCGGTGAG 3497086 28 100.0 33 ............................ CGCACTCGTCGCTGATCTGCTCGTGATCCACGA 3497025 28 100.0 48 ............................ CCAGCGGGGCTCGAAGGGGGACCTGGCGCTCCCGGCTGTGGCGTTCCG 3496949 28 100.0 33 ............................ CTCGCCAGCAACGCGGTCGCGTTCGGGACTCGC 3496888 28 100.0 33 ............................ CGCGGAAGGGCGGTCCGCGATGTCGAGCATCGA 3496827 28 100.0 33 ............................ CGACGGTCCCGAGGTTCTCCAGGATGTGCAGCA 3496766 28 100.0 33 ............................ CCGCGAGGCCATCCACGCCGGCCAGCCCTATGG 3496705 28 100.0 33 ............................ CCAGACCGACACGGACGGCAACGCCCGGCTCTA 3496644 28 100.0 33 ............................ CTACTACCCGCCCGCGTACCGCATCAACGGCGA 3496583 28 100.0 33 ............................ GGCGGCGCCGCAGTCGGGAGGCGTTGACGAGGA 3496522 28 100.0 33 ............................ CGCTGGGCTGGAGGGCGGGCGTGCGGGGCATGC 3496461 28 100.0 33 ............................ CGGCATTCCTGCGCCGGCCGCCAGCGCGGCGAG 3496400 28 100.0 33 ............................ CTGCCGCGTCCCGGTGGGCGCGCGGCTCGGAAA G [3496383] 3496338 28 100.0 33 ............................ CGCGACCGCGCCGCCCCCAGTCGCCCTCGTCCG 3496277 28 100.0 33 ............................ CCAGGCGTCGAGCGCGGAGAGAACCGCGCGCTG 3496216 28 100.0 33 ............................ CGGCGGCGGCTGGGTCAGCGACGTCGGGACGAC 3496155 28 96.4 33 ..........A................. CTCGGCGTCGGTGCCGCCTCGGTCGGGGTGCGC 3496094 28 100.0 34 ............................ CCCCATCGCTCGGAGTGAAAGTGCCAGAGGTGCT 3496032 28 100.0 33 ............................ CGAGGCGACCTGGTGCAGCTCACGCACGCCGTC 3495971 28 85.7 0 .........C...C......A...C... | C,T [3495959,3495969] ========== ====== ====== ====== ============================ ================================================ ================== 30 28 99.4 34 CCGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : ACGCCACCGACTCCGAACAGGGCTACGCCTTCCGCACCCACGACCACAAGTGGCATCCAGTCGACCATGAGGGCTTGACCCTCATCTTCCGCCCTTCGGGCCGCTCTACGCCCCCTCCCGCGTCGGCTTCCAAGGGATGGAGCAAAGCTTCCAAGCGCCGTCGATTCGGCAACAAGCCGTAGCTGACACGACCGATCGCGGCTCTTCGCCGCTGGCCGGAGGCCCGGCGCATTTGCGCGGCGGCGCCTGATCGCATCGGAGCACCTGCGCGCCGCAACGGCCCGCGTCCGCACCTGGCGTCACGCCCACGTCAGGAGGAACCGAACCGAGGCGTCAGTATCGGTGAGCGGAGCCCAGCAGGCAGGTGGCTCGACGCGAGTACCTCGCGTGTGGCCCGGGAGACGCCCCGGGACCCAGAAGTCCCTTTTTTCCGTATGTCCGTATCTCTCATCCTTGCTCAACGAGGCACCGCACCTTGATAAAAGCCCAGCTCACAAAGA # Right flank : CGTCATCACCGTGACCGCGAGCGCGGACCGTCTGTTCCCCTGAAGATGGTCCCCCCGCCGTTCCCAACCTTGGCGCGGGGTCTTGGCCGGCTCTGCTCGGCGGTCCGTGAGGCCCTCTGTGGCAGGCCAGCAGTACGCCGTCTCGTCTCTGAGAAGCCCGGACAACAAGGTCCCAGGCCATCGAACTGGGGCTTTCGCATGGACCGGGCGACGAGACTCGAACTCGCCCTCTGGACATGGAATCACCCGGCGCCGGCTGTCCCGCGCTCCTGAGCTGCGCCGACGAGCCGCCACGTCCGCTCAAACGGCTGTGGGCGACGCCGTTGATGTCCGCTGTTCGCTGCCCCTACTGACAGTTGTTGTACGCCGCCCCGGCAGTGCGCGCGAGGAGGAGGCTGTCTTGGGGCGGTCGCTATCCGACGGCCGAATGCGTTCAGCCCGTCAGGTGAAGGCTAGGGCGTGTCTTCAATTGATCTTGAGTGGTGGATCATGGTCGGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //