Array 1 20201-19783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCAT010000010.1 Clostridium ihumii AP5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 20200 31 100.0 34 ............................... TTAAATATTATAAAAAGCATATTAGATAGCGGAA 20135 31 100.0 37 ............................... GAAGATGGACCATCCAGTTACTTCCCACTTTTATTGT 20067 31 100.0 37 ............................... GAAGATGGACCATCCAGTTACTTCCCACTTTTATTGT 19999 31 96.8 35 ..............................A CAAAATATCTAAGAATAAGCAAATTTTCTACTTTT 19933 31 100.0 33 ............................... AAATATTGTTATTAAACATAAGCAACCTCCTTT 19869 31 90.3 25 .................A....G..G..... AATGTAAATTTAATGGTTAATGTAG T [19841] Deletion [19814] 19812 30 67.7 0 T.....A.A...T.G.-A....G..A....A | ========== ====== ====== ====== =============================== ===================================== ================== 7 31 93.5 34 GTTAATGATTAACATAGGTTATATTTAAATG # Left flank : TGGCCATATTTTGACTTGCAAACAAAAATAGAATACAAAGCTAAAGAATATGGAATAGAAGTTATAAAAGTGAATCCTAAATATACATCAAAAAGATGTAGTAGATGTGGATGTATAAATGAGTTAAATAGAGATTGTAAAAAAAATCAGTCAAAATTCAAGTGTGTTAATGATGAATGTAATAATTATGAAAATGCTGACATTAATGCAGCGAAAAACATAGCATTACCATACATTGATAAGATTATAGAACAATGTTTAGAAACTAACAAAGTAGTATAGTTTTAATAAAGGGTGATTTACCATCCTAAGTAGAGAAGTAACACGCTTAAAAACATTGAAATTACTTGAAAGGAAGCATGTTAACACTCTTACAACCGCTCCAGTTGAAATTTGCTGGTAAAAAGCTAGTATAAAAAATGCTATAAGCATGGTGGGTACTATGATATAACCAATTAGAAAAATTAATAATTATTAGAGGAAATGGCTGAGTTACTAAG # Right flank : AATTATAAATATAATAAGAATATTGCACGAAATGAGCCTAGGAGTTTAGTTACTTCTAGGCTCATTTTTTATTAAAAATAATTGTCTAATAATAAATGTTTAATTCTAAATTTGTCGAATTTGTGTACAGAAAACAGTTAAAGAGGTAAAATTTTTAATGTAAGATTAAAATGAGGGGGATTTAAAATGAGTACATTTTTATTTTTAGCTGGAGGAGTAGGATTTCTTATTTCTATAATATTTATAATTGTAAATATTATTAGAAGAAAAAAAATAAAAAAACCTTTAATTGCTGGTGGGGTTTGTATATTTCTTTTTATAGTATCATTATCCATGCCAACTAGTACACCAACAAACAATTCAGTAGAATCAAATAAAAAAGAACCTGCAAGGGAAGTTACTAAAACAGAAACAAAGGAAAAACAAAAAGAATCATTGGAAACTAAACCAGTGACTACTGAAAAAAAAGTAGAGCCTAAAAAAGATGATAATAAGATAAC # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATGATTAACATAGGTTATATTTAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 33523-32853 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCAT010000009.1 Clostridium ihumii AP5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================================================================== ================== 33522 36 81.1 228 G......-......G.T...............AT..T ACAACAACATGTGATGTATTTAAATATGTAATGCTAAAATTTGTTTTAAGTACAAGTATACAGAAGAATAAACATTGAAAAATCAATATGTTGGTGATATGATAAGGTATGTAAGGTGGACAGAAAATGATGTAAAAAAGCATGTACTAAAACTAAAAAAGTAACATTCTAAGCTCGTCTTACATAGCTTATAAATGGCTAAAACAAAGGGAAATATGAAAAAATGCT T [33509] 33257 37 100.0 36 ..................................... TATAAACCTAACTATAGCAATATATAGCTTTCTCAT 33184 37 100.0 37 ..................................... AGTAAAGTATGCTATAATTAAAGTACTTTAATTGAAG 33110 37 100.0 35 ..................................... AACGTATCTTTCCAAAACTCATTAGGTTCTAAAAC 33038 37 100.0 36 ..................................... TGGAAACATGTTCTGTGGGGTTAAAGGATGCTTCAG 32965 37 100.0 36 ..................................... TGTCTTGTGTAACTTGAAAGCTTTTAGATGCATTAC 32892 37 91.9 0 ..............................AA....G | TG,A [32856,32877] ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================================================================== ================== 7 37 96.1 68 ATTTAAATATAAAATCCATTAAAACAAGGATTGAAAC # Left flank : ATAAATGAAGCTATTGAAGATGTTTTTAATATTGGTAAAAATGATGATGAGTTTTTAATAGACGGCAAAGAAAATATAACTTATCGTAAAAAAATAATAAAAGAAGAAGTAGAGTTCGGTTGTTATGATGATTATATTAATTATAAATTTCTAACACCTTGGATAGCTTTAAATCAAAAAAAAGTTTTAGAATATGAAAAGTCAAATTTATTAGAAAAGGAAGAGATATTAAAGAAAGTTTTAATAGGAAATTTAATATCTATGTCTAAAGGTTTAAATTATACTGTAGATAAACAAATTAAATGTTGGATTAACTTAAGTGAAAAGGAAGTTATGCTTAAGGGAATTAAACATATAGCATTTGTTGGAGAATTTAAGACAAATTTTATAATACCAGACTATTTAGGAATTGGAAAATCTGTATCAAGAGGATTTGGTACAGTTGAGAAACAATAATAAAATATATACAATGCAAGGTGTATGAAGTTTTAATACACCTT # Right flank : AATGCAATTAAGATTTACCTGCTAAAACAAAATATAAAATACGTATAGTCTTAGATATATCAACATCTAAGGCTATTTTCTATATAAATAAGTATAAAAACAAAAGTCTCTTGTAAATAATTAAAAACAAAAATATTTCCAAAAGTAATAAAATTAATATATGGTATAAAAAGTAAAATAGTATATTATAAAATTGTAGAGATAATTTTATGGGGGGATAGTTTATGGATAAGGTGATTGAGGAGAAGGCAAGGATATGTTTTGGAGAAGATGTGTCGTTAAAAAGTCTAGTGAGGCTTTTAGGTGGAGCACAGAAGCATGTTTATTTGGGGATCTTAGATGATGGATTTAAGTTTGTTGTTTATGTGTGGGATAAGAGCACTAGTTATTTTTCAGATTGTGAAAATGAAATTGATGATGTATTTTTGTCTAGCAGTGCTTTGATGTTTGAACTAAATAATAAGTTAATGGTTGAGCATGGGATAAAGACACCAAGGTTG # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATATAAAATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.08%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 2 42378-41969 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCAT010000009.1 Clostridium ihumii AP5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 42377 38 100.0 38 ...................................... TTAATATTAGCCATATGAAATTAGATGAAATAAATAGG 42301 38 100.0 37 ...................................... TAGTGAGTACATAAAATTAAATGAATTAGTACATATG 42226 38 100.0 36 ...................................... ATTAATAGAATTATTATATTCAAAAATTGGATGTAG 42152 38 100.0 36 ...................................... TAAAAGATTATGGAGATAATCCAACTAGATTTATTT 42078 38 100.0 35 ...................................... AGATACTTACAAAAGAAAATAAAGAATTAAAATCT 42005 37 86.8 0 ........................T.......-..TGT | ========== ====== ====== ====== ====================================== ====================================== ================== 6 38 97.8 37 ATTTAAATATAAAATCCATTAAAACAAGGATTGAAACA # Left flank : ATTATTATTACTTCACAACATTAATAAATAAAAATATAAAAATAAATAGCTGTAATGAGGGAACTTTAGAATGGGTCAGTATAAATCAAGTATTAGAAAAAGAAATGCCATTTACAGCTAAACAATGCTTAAAACATTATTTAAATATAGGAAAAAACAACGACAAAATATATGCAGGAATTATCACTAATAAACATGCTATATTCAATGAATTAAATGAATTTTAAAACATAGAAATATTAAATAAATAGCAGTTAAGACTTAAAACATAGATATTATAAAAATTAAGTTTATAGTTAGTGAATAAAAATTTATTTTTATATACAAGCATATTCAATAAGAAACCTTGAAAAATCAATGTATTGGTGTTAATATAAGGTATGTAAGGTGGACAGAAAATGATGCAAAAAAGCATGTACTAAAACTAAAAAAGCAACATTCTAAGCTCGTCTTACATATCTTATAAATGGCTAAAACAAAGTGAAAAATGAAAAAATGCT # Right flank : AGAGTCATGATTTATGGCTCTTTTTTTATTAGGTAAAAATATAATTATTTTACCTAATAATGTATAAATTTTATAATTTTTGTCATTAATATATTTAGAAAAGAAAGGAGGAATATTATGGAGTTAGTGATTAATTCAAGAGGTGCTTATTTAAGCAAGATAGATGAGCGTTTTCAAGTTTCTTTAGGAGGAGTTAAACAGGAGTTTTCAAGTAAAAAGGTTGAACGTATATTAATAACTACATCTACTAGTATTACAACAGATGCTTTAAAGTTAGCTATGGAAAATAATATTGATGTAGTTTTTTTAGAGTTTGATGGAAAACCATTTGGAAGAGTATGGCATTCGAAACTTGGAAGTATTACAACAATTAGAAGATATCAATTGAAGCTTAATGAAATAGAATTAGGAACAGAGTTAGTTAAAGAGTGGATAATTCAAAAAATTGATAATCAGATAGGAGTTTTAAACAAGTTGAAATTAAATAGAAGTGATGAAAA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATATAAAATCCATTAAAACAAGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //