Array 1 1043955-1048496 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070897.1 Leptolyngbya sp. 7M chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1043955 28 100.0 33 ............................ ACAGGTCGCTGATTTTCTTACCACCGAGCTTGA 1044016 28 100.0 33 ............................ GATATCGCTCCGATGTCTATAAATGAATTCGTG 1044077 28 100.0 33 ............................ TAATGGAAGACCTGATCGACCGGATCAAAACCG 1044138 28 100.0 33 ............................ AATAGTAGGGGATAGATACTGAAACCCTCTAGC 1044199 28 100.0 33 ............................ GTTAGCAAGTCCGAACTGAAAAAATTGGGCTAC 1044260 28 100.0 33 ............................ TCACCCCGGATCAATGCCGCCACCGCTCGAATC 1044321 28 100.0 33 ............................ GACAACACGATCTTCGGATTCAACCCGCTTTTG 1044382 28 100.0 33 ............................ TTTTCATCGACGAACTGAAATCACTGCTAACGG 1044443 28 100.0 34 ............................ TGTGCATACTGCTGTTAGTTGCCAGCTTCCCTCC 1044505 28 100.0 33 ............................ TTCGTCGAGTCCGTCGTAGGTGTGCCAGAACGC 1044566 28 100.0 33 ............................ GCTTTTATAGCTTATGCTCGTACCCTGGGTTTA 1044627 28 100.0 33 ............................ GTCGGTAAAACGGCACGAGTAGCTTGCGTATGC 1044688 28 100.0 33 ............................ TTCTGCAACGTTAAATTTGCCAGCACTTCGCAA 1044749 28 100.0 33 ............................ GAAACATAACCCCCGTTACCACGCTCAACGTCA 1044810 28 100.0 33 ............................ GTCGGCGACAAAATTTGACGCTGTAGTTTGAAA 1044871 28 100.0 33 ............................ GAATAGCCGCCGAACACGCGAACACGCCGCAGG 1044932 28 100.0 33 ............................ TACACTACCGTTATCTGGAGCCAACCAAAAAAA 1044993 28 100.0 33 ............................ GTTTAATTCTTCAAGAGAAGAAGCGGTATATAA 1045054 28 100.0 33 ............................ GCACCACGCACTATCAGGGAACTTTATGACACA 1045115 28 100.0 33 ............................ GCGATAGCCCGCCAACAGTTGCGACCTGGCACT 1045176 28 100.0 33 ............................ TTTCCATAGTTTCACGCCAGTTAATCCTCTCAT 1045237 28 100.0 33 ............................ GACCCGACCGAATTCCAGCGTCTTTTGCTTCTT 1045298 28 100.0 33 ............................ GCGTCACCGTCAACCTGCCGTCGTTCCGAAAAC 1045359 28 100.0 33 ............................ GCTAAAGACTGTGCTCACATCAATGCAGCAGGA 1045420 28 100.0 33 ............................ GAGGGTCAGTGGGAGGATCGGTCTATTCGCGAT 1045481 28 100.0 33 ............................ GCGAAAGCAATTTTTTCTCACGTGGCTTACGTG 1045542 28 100.0 33 ............................ AGTGATTGCCGATAGGCAAGCACTCGTAGAGTT 1045603 28 100.0 33 ............................ ACTGGTGTTCCTACTATCGCGGCCATCGATATA 1045664 28 100.0 32 ............................ TGATCTTGGTTCGCGAAACGTTGCGAAAGGAA 1045724 28 100.0 33 ............................ GCAACACGTCGAAGCTGAACAGATCGCGGCTCT 1045785 28 100.0 33 ............................ GTTCCGCGGCGAAGAGATCTAAACACTCAAACA 1045846 28 100.0 33 ............................ GTCAGGGATCAGATACAAGCGACGACGTCGAAT 1045907 28 100.0 33 ............................ TAGACAACAAACTATCGATGCGGAACTTGCTAG 1045968 28 100.0 33 ............................ AGGCCTTGAGGCGCGCCAGGCGTTGTTCGTTGG 1046029 28 100.0 33 ............................ GGCCGTCTTTCGCTTTGCAGAGCTCCGCGCGGC 1046090 28 100.0 33 ............................ GATGACAGGCATCACGACCGATCAGGGGACGAC 1046151 28 100.0 33 ............................ GCGACGTGAGACTTTTTGATTTAAAGGCAAAGC 1046212 28 100.0 33 ............................ GTCCTTACGGCAGTACCTTGCAGAGTGGATGCA 1046273 28 100.0 33 ............................ GATTTTTGGGAGGCGAAACTAATGCAAATCATC 1046334 28 100.0 33 ............................ TTCTGCGTTTCACGAAACGGCGGCAACCCCTTG 1046395 28 100.0 33 ............................ TGGCCGAAATCGTCCGCGAAGATCGCAAAGAAG 1046456 28 100.0 33 ............................ GTTGTTGAAAGAGGCCCTCTTTGGCGACGAGGA 1046517 28 100.0 33 ............................ GGTGGTGAGTAGGTTGTACATAGGAGGAGAAGC 1046578 28 100.0 33 ............................ GATCGAGTCCAGGAATTCTTTTGCCTCGGACTT 1046639 28 100.0 33 ............................ GCAACGTCGTGGATTCGTCGCGGTAACCTGCAT 1046700 28 100.0 32 ............................ TCGACCGACGACACAGAACGCAGAGACGCGGC 1046760 28 100.0 33 ............................ AGCTGCCTAGACATTCGAACATTCGATTCCAGC 1046821 28 100.0 33 ............................ GGGCGTCTGGCGTCATTATGACATCGGACCACC 1046882 28 100.0 33 ............................ GCCTTCAAGACAAATTACGCCTCGGGTTCTGTG 1046943 28 100.0 33 ............................ ACGAGCGGTTGCATCGGTCTGTAACTAGGTCTG 1047004 28 100.0 33 ............................ GTTCTACCGCATTCGACAGCCTACGAATGTGGT 1047065 28 100.0 33 ............................ CTTGCAGTGAACCTCCCTAAACGGTGGTCATAT 1047126 28 100.0 33 ............................ CGTGCCGGTCTGGTGATAACCTGTAGATGTTAG 1047187 28 100.0 33 ............................ ACGTAACTCGGCTATACGCTTGATCTCAAACGA 1047248 28 100.0 33 ............................ ATATCAGATACCCGCCAACGCCAGCCGCGATTA 1047309 28 100.0 33 ............................ ACTGAGATCCGATGTCAACAAGAATCTTAAGGC 1047370 28 100.0 33 ............................ TCCAGATTTCCTTTTATTCGCACTTTCCCAATT 1047431 28 100.0 33 ............................ ACTAGTGATGGGCGGCGGTTACGGGTTAATGGT 1047492 28 100.0 33 ............................ CACCCGAGCGGCGCCCGCCGCACTGATACAGGT 1047553 28 100.0 33 ............................ TTTGTTGATTCGTTGAATCACAGGCGCCGCCGC 1047614 28 100.0 33 ............................ GCCGGATGTTTTCGAACTTAATCTACTGACTAC 1047675 28 100.0 33 ............................ GCCGAAGCGGAAGCCGCTTCGATGACCTCATCT 1047736 28 100.0 33 ............................ GCCGAACGTGATCAACAGAATTGTCGCCAATCT 1047797 28 100.0 35 ............................ GTTCAGCCGGTAGCTCAATTTTTTGTCGTTGTTTC 1047860 28 100.0 33 ............................ GTTAAATGGTCGCTTATTTGCTCACATAATTGG 1047921 28 100.0 33 ............................ TAAGAGGAGCACATATGCAGACAGAGCACACCA 1047982 28 100.0 33 ............................ GCTTCGCCCGATTAACTCTTGGCAAGCGTTACG 1048043 28 100.0 33 ............................ GGAACTCGGCGAATGCTTTAGGTTCCGCGTCTG 1048104 28 100.0 33 ............................ TTGTTCTTCCAATCGATTAACTAGATTACCGGA 1048165 28 100.0 33 ............................ TATAGGTACAGCTCTAAAGAATTATCAGGTTAA 1048226 28 100.0 33 ............................ TGTCGGAAGTAGCGGTATTTAACATAATTCTAA 1048287 28 100.0 33 ............................ ACTCGCGCCGTTTCCGGCTGGAATATACGAAGT 1048348 28 100.0 33 ............................ TCGATTTTGACCGAGTCATCTCTGTCTAGGGTT 1048409 28 100.0 33 ............................ CGTCTGGCGAATGTCGAACCAATCTTCGAAACG 1048470 27 82.1 0 ...A........T..........-..GA | ========== ====== ====== ====== ============================ =================================== ================== 75 28 99.8 33 GATGTCTCCACGCATGTGGAGATGAACC # Left flank : GATGATGCCGAGGTCGAGTTCGATCTGGACGATTTTGCCTTGGGAGGCCTCTGGGATGGCGGCGACCGCTCCGTCCCCGGCGGTGTGAATTATGCTGAAGAATTTCCAGAGGCCGAAAATGAGGAGGAGAACCAGTTATGATAGTGCTGCTGCTGGAAAAAGTGCCGCCTTCGCTTCGCGGCGAGATAACCCGCTGGATGGTAGAACTCAAAACCGGCGTCTTCGCCGGTCATCTTTCTGCCCTGGTACGCGATAAATTGTGGGACCATATCTGCTCAAAGACCCGCGGCGGCGGCGCTATGATGCTCTACAACGCCGCGAACGAACAGGGCTACGACATCCGTACCCACGGCGAAACCTCCAGAAAGATCCGCTCTTTTGACGGCCTTCTGCTAGCAACCGTGCCCAAAAAAGATAAAAAAGAACCGCCGTAAGAATTCGTAACATCGCCGCCGAGACTTAGCTTGCAAAAATCTCCTGAAACATAGTATTTTCCAAGT # Right flank : AATTAGAGTGACTAGATGACTAACCGAGATGAAGATGGCAAGCCAAAGAGTAGTTTAGGTCAGGGATATTTGCCTGCTGAGGGTGAAGATCTGTACAAATTATCAAAATAAATGCGCCACCAAACGATGATCGTTATCATAATAGGAAACTCTGTGTGTCTTTTCATATCAAAACCCACAGAGTTCCACCTAAATACAAAGAGCGGGTGATCTGATCGCTGGTGTTTCTTGATATTTAACCTGAGAATATTTACGCCGGTTCCTGAGCGTGGATAAGACGGCGTGTTTGATCGCCAAAGAGCACGTCTATCTTCTGCGGTTCGAGAACGGCAGTAACCTCACCGTGGCCAAATTTATCATGCATCATTGCCTGCCCCTTTCTGTATTTCTTAAAACGATCATAGGGCGCGGCTGTCTTGCCTTTGCCAACGGAGACGCTTGTTTTTACACCACGATTGAAAGTGCTTACACCCTCACATTCGCTGCAGATAGCTTTTGAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTCTCCACGCATGTGGAGATGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 2081181-2082939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070897.1 Leptolyngbya sp. 7M chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 2081181 35 100.0 35 ................................... GATTTCCTTATGGTTCTTAGGGTTTGCATGAGTAT 2081251 35 100.0 37 ................................... CAATACGGCTCAAAGTCCCCTTTAGCCTCTTGGTAGT 2081323 35 100.0 39 ................................... ACATTCTTCACCATATTCTTGACTGCCAGCGACTCTACA 2081397 35 100.0 40 ................................... ACAACACTGTCTACAGTCTCTTGAAGCCTCTGTAAATCCT 2081472 35 100.0 36 ................................... TTCTACGTAAATAATAAAGGAATCGAACTCTGTGTT 2081543 35 100.0 36 ................................... CCGAAAACTGCTGATAAGCAATCCAGTATTAACGTC 2081614 35 100.0 38 ................................... ATTGATCCTTTTTGTTTACGCGATAGCTTTCGCTGTTT 2081687 35 100.0 35 ................................... AAGGGATACGGGTAGTACTCCGGTAGCATGTAGAG 2081757 35 100.0 35 ................................... TCGTGAAGAATTTGGTTGACCAGAACCTTAAACGG 2081827 35 100.0 39 ................................... TCTGGGTTGTTCCAATCCAGAGGCTCTAGAGCCTTCAAG 2081901 35 100.0 38 ................................... TGGTGGATATGATGCCCAGTGGTACAGCTATTCTCTTT 2081974 35 100.0 35 ................................... TAAAGTAGCCTCTAACAAATCGTAGGCTAAGCTGT 2082044 35 100.0 39 ................................... AATCTGCTAGAAGCTCGTTAAACCGATCTGCGACTTCAG 2082118 35 100.0 37 ................................... ATTCGAAAGGAATTGAAGTCAAAGGTAGTTCTTGGTT 2082190 35 100.0 38 ................................... ATAGAGTAGATAGGGCCTGCACACTTCTGAGTTGTACC 2082263 35 100.0 38 ................................... AAACGAGCTGACTTGAATTTGGGATAGCCTGACTTGAG 2082336 35 100.0 35 ................................... AAGTCAGGTATGTCAGGCTTCGACGGCTCCTACTA 2082406 35 100.0 38 ................................... TAAATAGGCCCTGTCGTAGTCTTTTAAGGTTATTCGGT 2082479 35 100.0 36 ................................... TCTTCTTGACAAATAGTGCCTAGTTCATCGTGGACT 2082550 35 100.0 36 ................................... CCCTCTAGAACTAAGCCTAGGGTTTCTGCGTGGGGT 2082621 35 100.0 34 ................................... TCTTCGTGGCACTTCCTAACTAGCTGTTCAATTC 2082690 35 100.0 37 ................................... ACTCCGAGGCCATGTACAGGTACCAATCTGCACCCTG 2082762 35 100.0 35 ................................... AAGTAGAACGTGTAGTCCACGTACCGTACCCCGGG 2082832 35 100.0 34 ................................... AACAAGCTAATTTTTGTTATTTGCGAGGCTTTAG 2082901 35 88.6 0 ........................C.T.T.....G | AT,TT [2082927,2082933] ========== ====== ====== ====== =================================== ======================================== ================== 25 35 99.5 37 ATGTTTGATTCCTTTCCCCGCAAGGGGACGGAAAC # Left flank : GGGCCGGACATTTTGAAATCCGCGAGCCTTTAAGCCTCGAAATTCTCTTGTGTCTTGGCTTAATTGAGGGAAGTGTTTGGCAGAGGAGGGTGTTCCAAGTGAGAGGAAGGTGAGGAGCGGCGGAGAGGGAGAGATGAGGCAGGAGGGTGTCCCAGGGAAGGGGGAGAAGGGGAAGAGCATCCATAGAAGTTTGACAGTGGAGAAACGGTTGCCATTCGGACAAGGTCTGCTGCTCTAGTTTAGTGGTCTCTTTGCTCTGGCTTGACTGTTTGAGAGAAAATGTTTATGCTATGAACACTTTTAACCCGTTTCAAGGATGTCTGCTGAACCTTGAAAACCGCATAACTCCGTTGACCTGCTTGAATCGCTCTCCAGGTCTGGGTTTGGGGTTTATTCTCCACTGGCCTATTAGAAGCGATTCTCATTTATTCAGCTGATCATCTGACCTCCTTGAAAATGTTGTCTAGGAGCTTTGCTACATAATCATTCTGGAGGGCGCT # Right flank : GTCAAGAAATCAATGAATGATTAAGGGGTTGAACAAACGAATGCAAAAAATGTTTTAGAGCAGGATAAATGAGCGACTCAAGCAGACACATGAGCCACACTATCTCCAACATGATTGACGAATCAATTGAGATAAAGGCGAGGATTATCTCTCCATAACCTGGTGGATAAGAAACCTGGTGGATAAGATAACAACACTGACCCCCTGAACAAGGTGGGCGATCGCCCCTAATTAGGTAGAAACTTGCCAGGGTTGGCGATCGCGGATTATCGCATTGAGAATTCGCAGCAACTTGTGCATACAAGCCACCAATGCCACCTTCTTGGCTTTCCCCTGCTCCAGCAGACGGTCATAAAATGCCTTGATCTTGGGATTAAACCGCACCGCCGACAGCGTGGCCATGTAAAGCACCGATCGCACATTCGCCCGTCCTCCCCAGATCGTGCGATTACCGCGAAACTTGCCACTGTCGCGGTTAAACGGAGCCACCCCCACCAAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTTGATTCCTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 5446276-5447742 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070897.1 Leptolyngbya sp. 7M chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 5446276 36 100.0 35 .................................... CACTTTAAGTTCAAAAAGTACTTGGAAGGCTATAA 5446347 36 100.0 36 .................................... TTGAGTCAATTAGCAGATGTTTTTTGAATCAATTAG 5446419 36 100.0 36 .................................... CAAGGTGTTTAAGTCCTATTGACCTGCACGTGGCGA 5446491 36 100.0 36 .................................... TAGTCCTAACTCATCAATAATTTTGGCCTTACATAA 5446563 36 100.0 36 .................................... AATAGATTCATTGATGGTTCTTAACCCTAATAGATT 5446635 36 100.0 36 .................................... GATTGTACTGTTGACGCTATCAGACCAGGATTTGGC 5446707 36 100.0 37 .................................... TCGAAAAACTCCTGGACTTCAGAAGAAACTTCCTCTT 5446780 36 100.0 36 .................................... AGAATCCATTACCCTCAACCAACTTGTACTCGATGG 5446852 36 100.0 36 .................................... ACAAAGCTATCACTGGACTATACTGAAACGTATAAT 5446924 36 100.0 35 .................................... AACCTAGACTTACCGTGTCTAGGAGGACAACTAAT 5446995 36 100.0 35 .................................... AATCGTCAAAATTGTGTACAATGGTTGCAAACTAC 5447066 36 100.0 34 .................................... GATTGTAAAGTTTTGTTAAGTACTCTTCTAATAG 5447136 36 100.0 34 .................................... AGTTAGTAGGAGAGGCCTTTGATGGGGCCTTTGA 5447206 36 100.0 35 .................................... TGATATATTTTCCGAGTTGATATCCTGGTGTAGTT 5447277 36 100.0 34 .................................... ATGTTACAACTCCGTCTATCTACGAAAGCTCTAA 5447347 36 100.0 36 .................................... AGTAATTTTCTGTGTCTAATTCTTTATAGATGTAGT 5447419 36 100.0 36 .................................... TCCTAAAACTTCTTGGATTCCACTGGGTAAACTAGA 5447491 36 100.0 36 .................................... TAGCCCTAAACAACGGGTCTACCTTATCAATGTTGG 5447563 36 100.0 37 .................................... CCTGGCCAAGTTCGGTCTCGAGAACTACGAGGTTTCC 5447636 36 100.0 35 .................................... CAGGTTCCAAACATCACGTGCTCCTTCAGTAATAC 5447707 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 21 36 100.0 36 GTGCTCAACGCCTCACGGCATCAAAGGTTAATTCAC # Left flank : CAGATCGTTACTGCTGATGAAATTCTAACCCGCATCAGGCATTATCAACTTCTGCCAAAATTGCGGCGAGAACTGATTATCGATCAAGCAATTGCGACAATTGAGTGCACGCCGGATCAAATTGAGCAAGCCCAGCACCAGTTAATCACCGAATATCACCTAGACTCAGATGCAGCCAAACAAGCATTTTGCAGAAGCCGCGATTTAACGACTGAAGATCTGGAGTCTCTGCTGATCCGCTTGATTCGGATTGAGAAGTTCAAACACCAGAATTGGGATGTCAAACTCCCGTCTTATTTTCTTCAGCGTAAGCAGGCATTGGATCAAGTGATTTATTCCTTTATTCGGCTTAAGGACGAGGAGATTGCCCGCGAATTTTATTTCCGGCTGCATGAACAAGAGCAATCCTTTGCAGAATTGGTGCAGGAATACTCGCAAGATGCAAAAGCCAAAGGTTAATTCACACTATAACTTATGCTAATATTATTATTATAACATGG # Right flank : CATAATCAAAAACCTTGGCTAACTCAGATTCCAAATAGGTCAGCTCCAAACAACACGGCCCCATTGAGTTGGGCTTGGCTCAGATCGGCCCCGCTGAGATTAGCATGGCTAAAGTTGGCCTGAATCAGGTTGGCCGCTGCCAAATTAGCGCCCATCAGCTGGACGTAGACTAATCCAGCTCGGTTGAGATCACAGCCAGGACATTCTTTAGTAGTCAGCAGTTGCTGGGTGTGTTCCAGATTTTCCGCATAGGCAGCGGGCATTCCTCCTCCTGCTACCAGCAAGGTCAAGGCAACAACGCCGGGAAGGTAAGCTCTCATAGATTCACACGCTCACTAGTGGATCGTTCAAAGTGTACTGAAAAAATTCTCTGCTGGCAGCAATAGCAGTAAAACGTAGCAGTGATTAGGTAAGAGACTTGTCTCCAGCCGATTCAGTTCGGCAAAAACACATCTTGCCAGCTATCAAAGCCAAACTCCTGCTGAAACTCTTCGATTACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTCACGGCATCAAAGGTTAATTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 4 5543999-5542655 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070897.1 Leptolyngbya sp. 7M chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 5543998 23 100.0 51 ....................... AATTTTTCCCCATCAGAGTCCTCCTTATTTAATTAATCTTGCAGTCTCTTA 5543924 23 100.0 50 ....................... ATCTAGCATTGAGATTGGCTTGGTTGGCAGGTTGATCTTGCAGTCTCTTA 5543851 23 100.0 51 ....................... ATTTCTAGCTGCTGACTGGAGTTTCGGGCATTCCCGCCTTGCAGTCTCTTA 5543777 23 100.0 49 ....................... TGCATTGCGCTGGGCGATTGGGACGCAGCAGAGGACTTGCAGTCTCTTA 5543705 23 100.0 49 ....................... TAGATCAGCAGATTCAAGCATTGCTTACTTTGATTCTTGCAGTCTCTTA 5543633 23 100.0 50 ....................... GATCGATAGTCAATTTTGGTTTTGATTCTCTTGGTTCTTGCAGTCTCTTA 5543560 23 100.0 49 ....................... ATGTCCCTAGAAAATCTTTAATAATGGGCATGATTCTTGCAGTCTCTTA 5543488 23 100.0 50 ....................... ACCGAAGCCTGCCAGTGCTTCGCAAGAGATTCAGAACTTGCAGTCTCTTA 5543415 23 100.0 52 ....................... TTTTGATGCGTTGTCTGCCCGGTTGCGGCGCGTTCGTGCTTGCAGTCTCTTA 5543340 23 100.0 51 ....................... ATTTCTACATTAATGCATTTGCTGATGGTGGATCTTACTTGCAGTCTCTTA 5543266 23 100.0 50 ....................... CTACCGCTCCCCACAAAGGACCCTATGATTTGAGAGCTTGCAGTCTCTTA 5543193 23 100.0 51 ....................... TTGCAGGGACCAATATTGGTACCACGTTGCCGACTCCCTTGCAGTCTCTTA 5543119 23 100.0 51 ....................... AAATTGATAGATCGACTTCTGACACGTCCGCCGGAATCTTGCAGTCTCTTA 5543045 23 100.0 50 ....................... AACTGTGCAATTCGTTTCCAGTTCACATCACTCACCCTTGCAGTCTCTTA 5542972 23 100.0 51 ....................... CTTGTCAAATCGCGTTTCACCAGATGCGCCTGCTGGCCTTGCAGTCTCTTA 5542898 23 100.0 51 ....................... GTTGCGCCCAGCAGTCGAATTCGAGATTGCATGGGCACTTGCAGTCTCTTA 5542824 23 100.0 50 ....................... GAGTGCGGGCTTCCCGCCTAGTTGCTAATCTTCGAACTTGCAGTCTCTTA 5542751 23 100.0 51 ....................... GGTTGCGATCCAATTCGTAATTATGCTTTTTCAAGGTCTTGCAGTCTCTTA 5542677 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ==================================================== ================== 19 23 100.0 50 CTTCCCCGAAAGGGGACGGAAAC # Left flank : AGACTCAAGCCAGCACTTGGGGATAAACCGTTATCACAAGTATGGTGTAGGGCTGATAGATCACTCCGGCTCAACATCCTAACTGCAATGAGTTTGACAATATTGTGATTTTTGTTACTTTTTAGCTATTTTATAGCTCAGTTTAAGAATTGCCTGCGGTTCCAGTCTGGCATTTCTGTTTACAATCTTTAACCGTATGGTCAGCTCTTGTTATCTAAATCAAGGGGAAACAAAAGGTAAAACTGAATACAAATTAACTCAAGCTTCTACCGTATCACTAAGCAAATTCCTTCGAGCGTTTAGAGGCTAGCAATAAAACTTCCCATACCACTCAGAACTTACTTTCGATTAGATACAGCGTTCATAAATAGGTTGTGAACAAGGGGGTGTGGGGGCGAAGCCCCCACGCAGGGGTTCCACCCCTGCACCCCGTTCAAACTGGGACGGAAACACACCTACACCGCTTTTAGAACGATTTGGCTCACCCTTGCAGTCTCTTA # Right flank : AATTTCTCTGCCGGGCGCATTTCATATCCGTTCATGCTTGCAGTCCTGCTTGACTGACAAAACTAAGAAGCTGGAAAGCGGCTGAGAACGATGAATTCACGCTCGATTCACAGCGTTAAATTTGAATCGGCTCTACGCTTATCATATGGTCAGGAATCCCGCTTCGGGTAGGGTATTACAGAAAAATGGGTTTATCCAGGAAGGGTTACTGCGCCAACGAGTTCGAAAATGGGGAGTCCTTGAAGATGCAAAATTATGGGCAATGCTGCGACAGGACTGGTGCGATCAAATAGGGTTTGTAAATTGCTATTGTCATGTTGCTACTGAACCCGCCTGCGCGTGAACGATGGGCTAGTGAATCGAGTAGACTAAAGCACATTGAAGCGATTGTCTAGTCTGGTTTGGCAGACTTTTCGCTGACCTATGATTGCTCTGCCAACCAGAGAAAGACGAGGTAAAAAGCTGAATCATCAAACAACATCAGATAGATTCTCTAAATA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCCCGAAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //