Array 1 78854-78337 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQHQ01000028.1 Leptospira mayottensis strain 201601116 contig_00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78853 29 100.0 32 ............................. TAGGAGCGACACGTCCCGCGACTACTGAGCGC 78792 29 100.0 32 ............................. CAAAACACCATGATTGTCGCCCATGAGTTCGT 78731 29 100.0 32 ............................. TTACCGATTCCACGCCCATCAGAACGGAAGGG 78670 29 100.0 32 ............................. GGATTCTCGGTTTACTGGAAAGTTGAAACGGA 78609 29 100.0 32 ............................. TGAGGTCGATATAAATCCAAAAGTTATCTTAG 78548 29 100.0 32 ............................. ACACCTGAAATAATTTTTCTTGGCTGGAAGAC 78487 29 100.0 32 ............................. GCAATACGGGCAGAACTGAAAATTAAATTTCC 78426 29 100.0 31 ............................. ATAATAAAATTGATAATAAAGAGAAAGAAAA 78366 29 89.7 0 .........................G.TT | T [78341] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : TACTTAAAAGAATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAGCCGGGCGTTTTTGTAGCTTCCATTAACGCTAGAGTTCGAGATCAAATTTGGAAAAAAATTTCCGAAGAATGGAAATCGGACGCGATCATGTTGTATTCGAGCAACTCGGAACAGGGTTACGGCATCCGCTCTCACGGCGATCCTTCTCGCGAGATTATGGACTTTGACGGTTTACTTCTAATGTCCAAACCCGATTCTAAACACGATCAGAAAGTAATCATGAGTGTTTCCGATTTTTCTAAGGTTACCGAAGACGAAGTTTCTCCTTTTTCAGATCTTAAAGGCTTTTTCAACGAAAAGGCAAACTCCCTTCTTTTAGAAGCAGATGATCCTAATGAATCTAAAGAACAGACATAATTCTTAAGACTCCTATACAAACTTTTAGC # Right flank : TCAATTCCTAACCGGTGTCGGATTTCTATTTTTTATATATGTAAGGTGAATCAGAGGATCAAATTTTTTACACGTGGATTACTAACTTTAACGATTGTACAAGTAACTTGGTCCGCAAAATCCGCTCAAAGATTATAAGCTGGAAAAAATCATAACGAAACGTATCGCAGAAGAACAAATCCAGAAGACATACAAGGAATCTGAATCTAATTATAAAAATTATTTCCTTTAAAGATTTCTTGAATTGTTTCAAACTTTAATATAAATTTTCCTTTTATCTAAGAAACTTAAGATTCCCCACCAAACAGACAAATGAAGAACCGCGTATAACAACGATGCAAGATACGGATCTGCAATGAAAACAAGTTTAGAAAAAAACCAGGTTTTGATCCCAATCGATTTTCCATTTTCTGACATGATTGTCCAAAGGTTGAGAGTCCTCGCGAGTATTCCGGAGCCTACAAAGACTAAAATCGCATTTTTACCGAATACGAGTAACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 746-107 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQHQ01000267.1 Leptospira mayottensis strain 201601116 contig_00179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 745 29 100.0 32 ............................. ACTTTCAGGAGTTTTTTTCCTACGACGTATTT 684 29 100.0 32 ............................. TATTGGGATAAGATAACTGTTAAGCTTAATCA 623 29 100.0 32 ............................. CAGAAGAGGCAAAAGAGAGACAGGCTGCAAAA 562 29 100.0 32 ............................. ACATGAACCCGTCGAGAGGTTTTGAGTATCCC 501 29 100.0 32 ............................. GGCGAGGGCTACACTACTGAGCAGGTAGAGGA 440 29 100.0 32 ............................. TGACAGCTATTAAAGAATTGTCATTAGGATTA 379 29 100.0 32 ............................. TTTGTTTATAAACGCAGTTCCTGAACTAATAA 318 29 100.0 32 ............................. ACAATGTGGCCAGTGCTTTGTTATGGAGTTGG 257 29 100.0 32 ............................. ATGATCTTTTCCCCGTCAGTTAACCCGAACCC 196 29 100.0 32 ............................. TCGGCAACCGGTTTTTCGTTAAAGTAAATCCA 135 29 86.2 0 ........................C.TTA | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.7 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : ATTCTAAGATGACATAATATGTAAAATACTATACGAACTTTTAG # Right flank : AAAAGTTACAGAGAATAAAATTTATCTTTGTTTGAGATGCCCCCGTTTTTAGTACCAGTGTAAAGTGTCAAAATCCACTTAAGCAGAGCGTCTTAAATATTCCTCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 22426-23130 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQHQ01000090.1 Leptospira mayottensis strain 201601116 contig_00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 22426 29 100.0 38 ............................. TCGGGTCGCGACCCCGTAGGAGCGACACGTCCCGCGAC 22493 29 100.0 32 ............................. AAACACATTTGCTTTTTGTGAATCATTAATAA 22554 29 100.0 31 ............................. TAAAAAGTTCAATAGAAGTTCAAGCTCCTAA 22614 29 100.0 32 ............................. GGAGATTTAACGTCTCCTATTCCGAACCAACC 22675 29 100.0 32 ............................. GGGATAACGCGTTTGCCTAATACGTAATTTGA 22736 29 100.0 32 ............................. AATCTCGATCTGTTCCTCACGGTTCGGTGTGT 22797 29 100.0 32 ............................. GGAGAGAACGCGTTTGAAAAAATCAAACGGTC 22858 29 96.6 32 ............................C TTGACAGTGACCGCACCCTTTTTAGTGAGCCG 22919 29 100.0 32 ............................. TTTTAGTGTCGAACGTCGGGCCACTCGGCCCA 22980 29 100.0 32 ............................. GAGAGAGAAATCCGCAGGCTCTCGAAAATCTA 23041 29 100.0 32 ............................. ACGGAGAAGTTCGATTCCCGGACGGAAGAGCG 23102 29 89.7 0 ..........................ATT | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 98.9 33 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : CCGGATAATTGTGAATCTTGTTACGTTCGAAGTACTAATGCGATTCTTATACCGGTTCCAGATATTTCAATGAAAATTGATTTAGAGATATGAAAGACTCAACAGTTTATCGTAGAATGGAGAATCTTTTATATTTCAAAACGACAGTTCCTTGGAGAACTAACTCCGGTGAGATATTTTAGACAATCCGTTTAGAGGTTTTTCGCAATTTCAGTCGGTATTTTAAATGGGGCCATCTTACTTTTACTCTTTTCAATTTTGTTTTTGGCTACTTCCTTTTTTTCAGCAGAAAAAAGTCAGCGCGTTTTAGTTGTTAATGACAATCTTCAAACACGGATTCTGCACCGCATATCAGTGGGACTTGATTACGGGTAAAGTTGTAAAAAGCTTCCTTAGAAGCTCGTGTTCTTAGTAAGACGATTTGCCATCATAAATTAACTTGGACACGAAACCCAAAAATAGATTGCAAAATCCAGATTTATCCTATACAAGTTTTTAGC # Right flank : TTTCAGTCAAAACAGATCAGTAATAAAAATTCGGGAATAGAATCCAATTTAGAACTTTCAGTGTAAAAAACTAAGAACCAGTCTCAAAACCTAAAAATGTAGGAACTCTTACCAATTTTAAACAAGCCGCACAAAAACGGTATAAACCGCCAATGCGACGTAATCTGTGGGAACTCCCACATTTTCTTAGAAACTTACCGGACACGAAAGATACTCTTTGAAGGTGTTGAGACGAACTCTAAAACAAGCATAAGGCGATAAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGATTGAGATACCTTCCAACCGGATTCGGTAATTTTCATAAGAGTATTGTTTTGATCCAAAGATTCGAAAATCATTTCCGTTTTGGTTTTATATCCGCCAACAGTTAGAAGCTCATTTTCACCCTCATAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46-987 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQHQ01000001.1 Leptospira mayottensis strain 201601116 contig_00090, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46 29 100.0 32 ............................. AAAGCACACCCTTTGTATACATGTTTTTCCAA 107 29 100.0 32 ............................. GATATTACCAGTAAGCTCAAAAAATGTAGCAA 168 29 96.6 32 ............................T CGACTTGAGCGTCTTTTTCTTTATTCCACCAT 229 29 100.0 32 ............................. AAATCTATCAAGTGGAAGTCTCAGCGGATCTG 290 29 100.0 32 ............................. CGCATCAGAACAATCCAATGAAGACTCAGGGC 351 29 100.0 32 ............................. ATCGTGGATCGACTTTGCTTCCTTTGCCATCT 412 29 100.0 32 ............................. TCCCGCCGGTTTAATTCATCAAACATTCACAT 473 29 100.0 32 ............................. TCGCACCACTGCTGGAACCTGTCCATCGCCAA 534 29 100.0 32 ............................. TTTATGAATCCACATCCAGGAGAAATGCTCGC 595 29 100.0 32 ............................. TCTATGTTGACATTTTTTTATCTCCAATTCCA 656 29 100.0 32 ............................. TGGTCACTCCTCGGATTTCTTTCTGTAGTCCT 717 29 96.6 32 .........G................... TCAGTCGGGATTGTTCGGATCGAACATACGGG 778 29 100.0 32 ............................. TAGGCTATAGCTATAACATTTATTGCCATAGC 839 29 100.0 32 ............................. CAAACTGGCCAAATTTGACCAGTTTACGTTTT 900 27 89.7 32 ........--..........A........ TTTTCCCATCCTTCGCTTGCGCGTTTCATTTG 959 29 82.8 0 .........G..............C.TTA | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.9 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : ATTCTAAGATGACATAATATGTAAAATACTATACGAACTTTTAGCC # Right flank : AAAAGTTACAGAGAATAAAATTTATCTTTGTTAAATTGAGAATTTTTACAACGTAGAATCCATGAATTCAACTTTAAGTTTTTAATATTCCTATTTTGTGGAAATTTCACTTTCGCAAAGGTGAATGATGGACTTAGGAATTACGATCGGAACATAAAGAATATATCTTAAAAGTCCTTTGTTTAATCTCGAAAAACGAAGTTTCAAAACGGAATAATACTATTTAGAAGCCAAAAAGTTTGAAAAAGAGAAGTGGTAAACCAAAGATAATGATGATTTACTAATTTATAGCATATTGGAAATGATGAAATTGATATGCGGAATTTTATTGTCGTTTTAATTTTTACCGTATTTACTTTTTCCGGTTTATTGGCGAAAACTTCCGATTTCAACGGTGAATGTAAACCGAAAGAATGGATCTGTATTCTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTTCAAAACCAAACACCTTCGGGAGAATATCCTTTTAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //