Array 1 6764-5277 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYQW01000033.1 Streptococcus agalactiae strain GCH43 33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6763 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 6697 36 100.0 30 .................................... AAACAGTATTTAAAATTTGTGATATTTTAG 6631 36 100.0 30 .................................... TACAAATTCCTAAATAGCTAAACCCAATAA 6565 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 6499 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 6433 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 6367 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 6301 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 6235 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 6169 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 6103 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 6037 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 5971 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 5905 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 5839 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 5773 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 5707 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 5641 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 5575 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 5509 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 5444 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 5378 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 5312 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //