Array 1 11668-13451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNK010000002.1 Thermococcus bergensis strain T7324 unitig_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 11668 30 100.0 37 .............................. AAAACTGACAGTGGAAAGGGTTGTCAAGAAACTCAGA 11735 30 100.0 37 .............................. TATGGAGGGTTTCATATATATAGAGGGTTTCATATGG 11802 30 100.0 37 .............................. TATAGGCAGAGGATAACGATAAGCAACAGCAACGCTT 11869 30 100.0 34 .............................. CTAAGTCCCCGAATTCCCTTAGCAGCCTTCTTAG 11933 30 100.0 37 .............................. TTGGCTCTATGTCCGCGTATTTGCGGACACGAACCCA 12000 30 100.0 37 .............................. AGTACAGCTGGAAAGAATCTACGAGGAGTACTATACA 12067 30 100.0 39 .............................. AAGAAGAGTGTCGACTTGATTATTGCAGACCCTCCTTAT 12136 30 100.0 37 .............................. CCTTTCCACTTTACTTACTTTTTTGTATTCTTCTTGC 12203 30 100.0 37 .............................. AACGTGCCGTGACAAATACATATACTTAGCCCAAATA 12270 30 100.0 36 .............................. CTTGCTTCGACAACTGCTATAGAGCTATCGAGCACA 12336 30 100.0 39 .............................. AATAGGTATGATATTGAGGGTATTGATGCACCTGAGCGG 12405 30 100.0 36 .............................. CTAGTAAATGCTCCAGTAGCACCACTGAAGTACAGA 12471 30 100.0 40 .............................. TTTCCGTGTTGGGAAGGGCAAAGGGCAAACTTATGTTTAT 12541 30 100.0 35 .............................. AAAAAGTTCACATTCATTTTCCTCAGATCTGCAAA 12606 30 100.0 39 .............................. TAAACCACCTGATCTCGAACAATGTTCGTGATTGCATCC 12675 30 100.0 39 .............................. GTTATCGGTCTTGCGGGTGTCCTCATGGGCATTATGTTC 12744 30 100.0 38 .............................. TAATAATATGACTATTGCGATAAAGCCAGAGGGTGGGA 12812 30 100.0 41 .............................. GACGACGGCGAGAAAGCGCTTAAGCTGAAGAACAACAAAAC 12883 30 100.0 36 .............................. AGAACAAACTAACAACTGTGTTCACCTTCATAGCTC 12949 30 100.0 38 .............................. AGGGTTACATATTGTCTTTCTTTTTTATTCAGCCGAAA 13017 30 100.0 37 .............................. GACACATAGGATACCTGGCTGGGAGGAGAAGGTTAAG 13084 30 100.0 38 .............................. TGGATTATGAGCCTCTTTCGGATATCACACCGAGCACA 13152 30 100.0 38 .............................. TATCTCTCTTAGGCATGCCCTACACGATCGTAAAAGAC 13220 30 100.0 36 .............................. CAGGTAAGCCCCCAAGCAAGCCCTCATCATCTTTTA 13286 30 100.0 39 .............................. AAAGCCTCGGGGTCAAATTTTAACCCTCTTTGTCTACAA 13355 30 100.0 37 .............................. CTTTCAGAGAAAACAGTCGATGTGAGCTTCCAGGTGC 13422 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 27 30 100.0 38 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Left flank : GAAAACTCAAAATGCTTATCCAATAGTCTTGTATCATGTTTGGATTCTCTCTTTTTGGTTTTTCTGCTTTCTGAAGGATTAATTTTGAGTTTAAGGCTCTAGGAATGCTCTGGAAGTCTTTAGTAACTGAAGGTTACTATCTTACAAAGAGTTACAAGTTTTTGAGAGTTTTGTAACGAAATTTTTTCGAAGTTTTGAGTTGAGGCTTCTTAGGGCTTCTTTGGTATTCTCTCCTCGTGGAAATTTAACCATTTTTAGTTTAAGGCGGTTTTATTGGGTTATTTTTGATTTAAGCTCCTATTTTGCCCCTGGAAGTCTTATGAACAAAGTTGGGCATGGGGAAAAAGGAGGAGCTTTAAGTAGGCTAGAGCTTTAAAGTTTTTTCTGGAAGCTCGAATTTGAGCTTTTTGAGGGGAGTTTTATTGACCCCTTGAAGAAAAGCTTATAAGATTCAAGCCTTCTAATTACTCTTTGAGGAGTTTAGAGGAAAAATCGCCCCT # Right flank : GCGCTTAGGCGAAATCTTAAAAACAATAAAAGCGAAATCAAAGAACTCTTTCCAGGATTTCCCTCAGGTCTTTCAAAAACTCCTCAAGGTGCTCCCTCTTTACGTGGGGCATCATAACTATCCTTATGTACCCCCTGTGGGCGCTTATTCCCCAGCCTCTGGCTTTGAGCTCGGCCTCAATTTTCTTAAGCTTCCTGGAGCCGAAGGAGACTATGTTCAACATGGGCTCCCTTATAAGGTATACCCCATTTAGACCCTTTATTTGCTCCGCGAACCAGTAAGCATTTTCCATAGCCTCCTTGACAACTCTCTTGTATCCTTCAAAGCCAAGATGCTTGAGGAGGGCCCATACTGCTATTGCATTTGCACCTGGCCTAGTGCCGGTAATGGTCGCCTGGAATATCTTTCCTCCAGCTAAATAAGGTGCTAAAACGTTTATGGCCTCTATGTACTTTTTCTTTCTAAAAACTATCCCCCCAGCAGGGATTGGGGCCATGCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 1 26693-27134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNK010000001.1 Thermococcus bergensis strain T7324 unitig_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 26693 30 100.0 41 .............................. TCGCTGACGTAATCTTAGTTCTCGAAGACCTCAGGAGGGGG 26764 30 100.0 37 .............................. CCTTTTTTCATCGTTTAGGCAATGATTTAATCATTAT 26831 30 100.0 38 .............................. AATTTTGTTCTCATTCTCTTCTGCGGTCTTTTTTCCCT 26899 30 100.0 39 .............................. CTAAATAAGGAGCTCCATCTTCAACTTCTGGAGGATCAT 26968 30 100.0 39 .............................. TATGTGGCTTTTGTCCCCTTTGACCTGGATATTTTGAAG 27037 30 100.0 38 .............................. TGTATGGGTTACAAAGGACGTTGCTGATGAGGTCGTGC 27105 30 90.0 0 .................A....G......T | ========== ====== ====== ====== ============================== ========================================= ================== 7 30 98.6 39 GTTCCAATAAGACTTTAGAAGAATTGAAAG # Left flank : ACTACGTAAGTGAATAACTGGATATCCTCCATATCACGTTTGGATTCTCTCTTTTTGGTTTTTCTGCTTTCTGAAGGATTAATTTTGAGTTTAAGGCTCTAGGAATGCTCTGGAAGTCTTTAGTAACTAAAAGTTACTATCAGACAAGGAGTTATGGTATTTTGGAGATTTTGTAACGAAATTTTTTCGGAATTTTGAAGAGAACCGTCTGGGAGCTCCTTGAGTACTCTCCCCTCGTGGAAATTTGACCTTTTTCGTTTTAAAGTGTTTTTGTGGACTTATTTTTGGTTTAAGCTTTTGTTTTTGTTCTGGAAGTCTCGTGAACAGGAATGAACATTAGAAATTCTGGGAGTTTTGGAGGGTTTGAGCAGTTTTATCTCTCCATATTATGCTGGAATTACAGACTTCTGGAGGCGTTGTTATTACCCCTTCATCGAAAGCCTTAAATATTTCGAGCTCTCTAATAGGCTTATAGAGGAATTCAAGCAAAAATCGCCCCT # Right flank : TGCTGAAATGTAAGGCACCTTAACCCAAACCACGGCCTGTTCCAAAAAGACTCCTGACATCCTCTACCTTCTCACCAGTTATGAAATATGAATGACGAAGTGATATTCTCCCCTTACCTGAACCCCCGACATCTCGAAAACGCTGGGTTTTTAAACTCTCACCCTTCTACTTTACCATATATCAAAGGGGAGGGTGAGAGAATGGACAAAGTTTATCTCACATGGTGGCAGGTTGATAGGGCAATCTTCTCACTTGCTGACAGCTTAAGAGAATACAAACCCGACGTCATCGTTGGGATCTCAAGGGGAGGCCTTATTCCAGCAGTAAGGCTTAGCCACATCCTCGGAGATGTGGAGTTCAAGGTAATCGACGTAAAGTTCTACAAGGACATAGGAGAGAGAGGAGAAAAGCCTGTGATAACAATCCCCCTCCATGGAGACCTCGAAGGAAAGAAGGTTGTAATAGTAGACGACGTCAGCGATACCGGAAAGACTCTCCA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAGAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 89344-87479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNK010000005.1 Thermococcus bergensis strain T7324 unitig_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 89343 30 100.0 39 .............................. GTCATAGTTTACAAAGCCTACTTTGACGTAACGCTCTTA 89274 30 100.0 39 .............................. TAATTGACCAGTCCAGCTTGACTAGTTCTACGCCGTGAT 89205 30 100.0 37 .............................. GTAGGGGGCTTTTTCGCAAGCATCATTATCAAGCTTT 89138 30 100.0 38 .............................. TGAACGCAACAATTCTCATCAAGGACGACAAACTGACA 89070 30 100.0 39 .............................. ACTCTTCAAATATATCTACCTCCACCATCTTTGCATACC 89001 30 100.0 39 .............................. TGTCATCTGGTCTCTTTGTTCATCTGTTATTTTCTCTTG 88932 30 100.0 38 .............................. AATGTCCAGCAACCAACGAGAAATCTCGACACAATCTA 88864 30 100.0 38 .............................. ACACCTCCCCATCTTCGGGAAAGACCCAACAAGAATGA 88796 30 100.0 45 .............................. TCATGAATGCATATGACAACAAAATACTTCAACAGTTACTCAAGA 88721 30 100.0 37 .............................. TATTGCATTGGGTATTCTCTGGGATACTGAATGTTCT 88654 30 100.0 41 .............................. CTCCAATACGAGATTTTCAAGCTACTCTCAAGGAATCAAGA 88583 30 100.0 38 .............................. TAAACGATGTCCTGCAAAAACAACAGTAAATCGTTGAG 88515 30 100.0 36 .............................. TTAATGCTAAGGAGGCTAGGGCTAGTAGTGTTACGT 88449 30 100.0 36 .............................. GATATTGCGGAGTTTTTGACTTCTCAATAATAAACC 88383 30 100.0 36 .............................. GGGTCGTGGTGGCTTCGTTTTGGCTTTCCTCTTCTA 88317 30 100.0 38 .............................. ATGGAATATTACACAAACCGGCGAAGTGTGTTGCATGT 88249 30 100.0 42 .............................. GACGATGTTTTTATTCTATTTGATGACTTTAACGGCACTGAA 88177 30 100.0 38 .............................. AAGAGTGGTTAGAAGAATGGATAGATCGAAGAATTAGC 88109 30 100.0 39 .............................. TAACGCGAAGATAACAAAGTTTATCGTCGATTCGAACAT 88040 30 100.0 36 .............................. CTTACAATACACGATTCAAGAAGACAAAAGTTGAAG 87974 30 100.0 35 .............................. CGTATAAGACAAGATGCAGACTGGATCATCGTTAC 87909 30 100.0 37 .............................. GCCGTTGCAACGAGTACAAGATTAGGAGCCGGTCGGT 87842 30 96.7 33 .................G............ CTAGTTTCCTCTTTTATCGTCGCCCTTACCCAA 87779 30 96.7 39 .................G............ TCCACATAACAGGGGACTGTTACGCAAAGATCCGTAAGA 87710 30 100.0 38 .............................. GCCCATACGATGTTCAACTATCTACTACGGCAAAAACG 87642 30 100.0 37 .............................. AATTGATCCCAGCCTATCCCCATTTTTGCTATCTCTT 87575 30 100.0 37 .............................. CTGCTTCAAACGTAATTTCACGAGTTGAGAAGTGCTC 87508 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 28 30 99.8 38 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Left flank : TTCGCAGGAGGATTGAGACTTTGTTTTCGAAGTTTTCTGAGTTTCTTCTGAAGCCGAGCAGGAGTGTTAGTTTGAGGGGGTTGGTTGTCAGGATTTTAGGGGCGATTCTGGCCGTGAATCTGGACAGATTATACAACTTCACAGATGGTGGGAACTAGGGTTTTAAAAGTTTATAACGAAATTTTTTCGAAATTCTAAACAAAGACTTTTTAGGACTTCTTTGGTATCCTCTCCTCATGGAAATTTAACCATTTTTAGTTTAAGGCGTTTTTGTGAGCTTATTTTTGATTTAAGCTCCTATTTCGCCTCTGGAAGTCTCATGAACATTCTTGAGCATTGACAAAAAGGAGGAGTTTCAAGTGTGGTTGAGTTTCAAGGTTTCTCTCAAGGGCTCGAATTCGAGCTTTCTGAGGGGAGTTTTATTGACCCTTTGAAGAAAAGTTTATAAGATTCGGGCCTTCTAATTACTCTTTGAGGAGTTTAGAGGAAAAATCGCCCCT # Right flank : AAAAAGAGTTGGACAGTTATGAACAACACTTTTAAACCTCACCAGCTACTCTATTTTGATGATAGCGTTAGGAATTGAGGGGACTGCACACACACTTGGCATAGGGATTGTGACGGAAGATAAGGTTCTCGCCAACGTATTTGATACTCTAACAACCGAAAAAGGTGGCATACACCCAAAGGAAGCCGCTGAACACCACGCAAGGCTCTTAAAGCCCCTTTTGAAAAAAGCCCTTAGAGAGGCTAAAATCAACATTGAAGATGTTGACGTAATTGCTTTTTCTCAAGGGCCAGGACTGGGGCCGGCTTTGAGGGTTGTGGCAACAGCCGCGAGGGCTTTGGCTATAAAATACAACAAACCCATTGTCGGGGTCAACCACTGCATCGCCCACGTGGAAATTACGAAGATGTTTGGAATAAAAGACCCGGTTGGCCTCTACGTAAGCGGGGGCAATACTCAGGTTCTTGCATTAGAAGGCGGTAGGTACAGAGTATTTGGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 2 187971-185439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNK010000005.1 Thermococcus bergensis strain T7324 unitig_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 187970 29 100.0 40 ............................. AGTCCGTTGCCGCTCTTATCAAGCCACTTGTTATTGACCG 187901 29 100.0 36 ............................. AAAACAAACTCTCCGTCTTCAGCATTCATTCCAAGC 187836 29 100.0 38 ............................. TTCGCTAATTGGCTTAACCTCACTCCTCACCCTCCCCT 187769 29 100.0 38 ............................. GCTAACCAATTAGCGAAATATGTTTTCCCCGAACCTGT 187702 29 100.0 38 ............................. GGTGGTTGCTATGAGAACTGTATTCGATGACAAAAGAA 187635 29 96.6 37 ............................C TGAAGGGGTATTTTGACGGTTCGCTTGTTGGCCAGGT 187569 29 100.0 39 ............................. AGCACAAAATCTCTCAGCTTCATTCTAGCAAGTACCTCC 187501 29 100.0 40 ............................. CCTTGTGCCTCTCAATAAGTTCCCTTGCAAGGGCTAAAAG 187432 29 100.0 37 ............................. AAAAGTTGCAGGCTCTTTTAGATGAAGGAATTATTAT 187366 29 100.0 37 ............................. CGTATTCGATACAGATATAAGCGAAGGCGGGGTTAAT 187300 29 100.0 44 ............................. AGCACTTTTGCGTATTGTGGTATGTATCGGGCTTCTTTTAGAAA 187227 29 100.0 39 ............................. ATCGCCCTTGCTGAGATTTTGACGTGCTCCCACAAGTGC 187159 29 100.0 40 ............................. ACTCTCCATTGAGGGGTAAACTCTCATTGAAGACGGGTTT 187090 29 100.0 39 ............................. AGGTCAATCCAGAAGTCATAGTCATTGTGTGACCTCAAC 187022 29 100.0 38 ............................. GATAAAGCAAGGGCATTCCCAGATACTTGGACTATACC 186955 29 100.0 40 ............................. CTGCGGAGACGCTTGGCAACTGCTTAGGGAGCTTCCAAAG 186886 29 100.0 41 ............................. TTGGATAATAAAGTAATCCTAGCGTCGCGTAATTTCCACCA 186816 29 100.0 42 ............................. AGTTCTTCCTCCTAAGCGCCGCTTTTGCCCTATTTGCGGCGT 186745 29 100.0 39 ............................. ATGTTCCGTGCCCTGATCCAAGTAAAACGGTATAAGGAA 186677 29 100.0 38 ............................. GTATATCCTCCAGTATACTTCTGAAGTCCTTAAGGAAC 186610 29 100.0 38 ............................. CTCTCGTTCTCGCTAAGTTTGTACTCCCCTTCACCGTT 186543 29 100.0 40 ............................. CCTCATGCTTTCATCCCTCCCTCAACTTTCACCATCCGGA 186474 29 100.0 39 ............................. ATCACCCTGAAATAGAGATAATGCTTCTCGGGTGGAAAG 186406 29 100.0 42 ............................. ACTTTTCTTCGAGCTCCACATACTTCAGCTCCTCATCAATCC 186335 29 100.0 38 ............................. ACTTGCCTTTTCTTACTTGAAAAATGTAGTAGTCATCA 186268 29 100.0 38 ............................. GCGAGGTAGGACTCTAAGTCTTCTCCCATTCATATCAC 186201 29 100.0 39 ............................. ACGCTTACTGGGGAGTAGATGTTGTTAAAGCAGATCTCG 186133 29 100.0 36 ............................. CTGCTCACATCCTCACTTTAAGACTGCAGAACCCAG 186068 29 100.0 38 ............................. CCGGGGTTGGAAAACGTCTCCTTTCTCAAACATTTCGT 186001 29 100.0 37 ............................. CTCAAGGGGCGCTTGGGGAAGAAGAATCCGGGAGCGA 185935 29 100.0 37 ............................. TCTAATTTCTTTACGTCGCAGTAGTTGAGCTCGTAGA 185869 29 100.0 38 ............................. CATAGAGCAAAGATGCTGCCCCCGTAAGTTACTTACGC 185802 29 100.0 36 ............................. AGATTTGTTCATCTGTGAACTGTGGCGCACTGATGA 185737 29 100.0 40 ............................. CTGGGTCTAATCCCTTCTTGTATAATTCCCATCGCTTCTC 185668 29 100.0 38 ............................. TCTTCTTGGGTATTGGCATCTTCACCATTCTTGACCAC 185601 29 100.0 38 ............................. ACTCTTTACCATACTTTGTCGCCAATTCATCTAACTCC 185534 29 100.0 38 ............................. AACAGGTGATGCTTTTGGGCTGGCGCATGGTCAGGGAG 185467 29 79.3 0 ................G.....C..TGGT | ========== ====== ====== ====== ============================= ============================================ ================== 38 29 99.4 39 GTTTCCGTAGAACGTAATCGTGTGGAAAG # Left flank : GTGCTACTCTTCGATGGGGAACCGGTTTTCGTGTTTTGAAGCTCTTTTTTCCTTCTTGTTCGTCCTTTGTTTTTGGTTTTAACTGCTTTGAAAAGTGTACACGAGGTTTAAAATGCTCGGAAGGGTTTTCGTTTTCTGTTTACCCTGTCAGTGGTAAGGCTTTGCCAAATGGATACGTTTGACGGAGAATGCATGGAAAGTCCCGGATAAGCAAATTGCGTGAAGTCCGTAGAGTTTGAATGGTTGAAAGGGTTTATATGACCATGGATTTTGTTTTCAATGGTTCTACCGCCCACAGATTTGCTAAATTTGGTTTCGATTTTTGGGAGGAGGTTTTCGGGTGCTTTAAGGTAAGCGGAGACGATTTAGTGCTTTTTGGCGGCTTTTTCATTTTTGCATCAAGTTTATAAATGGAGCGCAGTGCTACGGGTTTCCAGAGAAAGCCTTAAATAGGAGTTTGAAGATTACCTTATTTGTCAATCAGAGGAAAAAAGTGAAAG # Right flank : GCTATGAAGAAGCCCGTGTACATAACCCAGATGGGCGTCCTCGAGAGGAGGGGCAACACCCTCTTCTTCGAGAACGAGAACGGTAAGAAAGCCATACCCGTGAACTCTACGAGTGAGGTCTACTGCTTTAAACCCGTGACGCTGACGAGCGGGGCCATAAAGCTCCTCTCCGAGAAGGACGTTCCTGTACACTTCTACAACAAGTATGGTTATTACAGAGGCTCTTATATGCCGGTCGAGGACCAGGTGAGCGGGAGCGTTGTCATAAAGCAGGCGGAGCACTATCTCGATGAAGAAAAGCGCCTCTACATAGCAAAGCAGTTCGTCGAGGGCATAAAGGCCTCAATGCTCGCACTCCTTAAATCCTACCGCGCCGATGCCTCGGCAATTGAAGGGATTCCCGTCGATGGAGAAAGCCCGGCCGAGCTCATGGGCGTTGAAAGCACCCTTTGGAAGGAGTTCTACGCCCTCTTCGGCTCTCTCCTCAAGAACTTCGAGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACGTAATCGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 1164569-1162160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNK010000005.1 Thermococcus bergensis strain T7324 unitig_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1164568 30 100.0 37 .............................. TTTTTTGATTTTTGACACAACAACTGATAAGTATCAA 1164501 30 100.0 38 .............................. CGCTTAGGCAGGAAATGGGGAGTTTTTCAGGTCACAAT 1164433 30 100.0 44 .............................. TCGGGTGAGTTGGCTTTAATAACACTTATATTGTAATTAGGTAA 1164359 30 100.0 38 .............................. AGAGCTTAGTCAAGTGTTACCTACAAAACCAACAGAAG 1164291 30 100.0 39 .............................. CTTAATGATAATGCGATGATTAGACTTGTTATCAAAAAG 1164222 30 100.0 37 .............................. TTTTACAAATTTACAAGATTTGAGGACAAAGACAAGT 1164155 30 100.0 37 .............................. TACTGCAATCTCTCTCTAGCTTTAGCATCCCCTTTTG 1164088 30 100.0 31 .............................. TAGAAGAAGAAGAAGAAGGTGTGTGTGTGTG 1164027 30 100.0 38 .............................. TCAAACACGACTAGGCTTTACTTCTATGATAGAGGGAG 1163959 30 100.0 37 .............................. CTCTTAGAATATCACCCCATTCTGTCTCTATGTGTAT 1163892 30 100.0 41 .............................. AGCTCATGTTTAATATCTAAGAACAAGATAAAGAGCAGAAG 1163821 30 100.0 37 .............................. CCGTGAGGTTTTCAATAGATTTTACATCAATAAGTTA 1163754 30 100.0 34 .............................. AACTTTTTATCTGCAGCATGTAGCACTGCATCAG 1163690 30 100.0 37 .............................. TAATACACTTTTACTCACACGAGTAGTAATAAAGAAG 1163623 30 100.0 38 .............................. TAATACACTTTTACTATAGCGAGTAGTAAAAACCAACA 1163555 30 100.0 38 .............................. TCGTAACTTCTTTTTTTAATATTTTAAGGGGTTCTAGC 1163487 30 100.0 38 .............................. CTATTAACGCCCCAATAGCTAGAACCGGTAGACTAACC 1163419 30 100.0 41 .............................. AAACGTATTTATATTTGGTCATGTTAAACACTATTGGTTAA 1163348 30 100.0 38 .............................. TGTAGAACCTCATAAGCCTCGGATCAATATCGTTAAGC 1163280 30 100.0 44 .............................. TTGAAAGATTCTCGGAAGGAGAGATTAAACCCCCCTTCTCCCTC 1163206 30 100.0 37 .............................. AAGTCCTCGTAGACTCTTTCAAGCTGTACCTTGTCAA 1163139 30 100.0 37 .............................. TTTTTGCCGTTTTCTTCAATTTCGTTCCAGTCCGCTG 1163072 30 100.0 37 .............................. CTCCTCAGGTGTAGGGAGGTATTCATATTCACACCCC 1163005 30 96.7 38 .................A............ AGCATAAGCACCCAACTTAGAAGCAATGATAAGCCCAA 1162937 30 96.7 37 .................A............ AATGCTGTATAATTTGAGTCAAGAAAAGCAACCTCTA 1162870 30 96.7 37 .................A............ TATCTCTGTATTGATATAATAGATAAATCACAAATAG 1162803 30 96.7 38 .................A............ AGCGGATATATAGACGCCGCCGGTTCAAGTGAACCAGC 1162735 30 96.7 38 .................A............ ATTCATCTTTTGGGCAATATGCAATGTATCTTGGCAGT 1162667 30 96.7 36 .................A............ ACCAGCTACGCCTAAAAGAAATTCTACAACATCCCC 1162601 30 96.7 38 .................A............ CTTTTGGTCTCTATAACTCCAACAAAAACTAAATTCTC 1162533 30 96.7 35 .................A............ TTGAATTCTTCGAAGGGTATAGGGATGACGAAGGA 1162468 30 96.7 38 .................A............ AATGGTGTTGATGTAGTCATAAGCCGTCCTCCAGTCCA 1162400 30 96.7 37 .................A............ ATCGCTTGGAAGCTGGCTCAGAATAGAGCTTAATCCT 1162333 30 96.7 37 .................A............ TGCGGACGCCATCCAATTCAAACTCTGGATACTGCAG 1162266 30 96.7 42 .................A............ CTGCCTGCTCTAGATTATGCTATTATTGTGGAAACTTCAAAG 1162194 30 83.3 0 .................A..A...CA...A | G,G,AGA [1162172,1162177,1162179] ========== ====== ====== ====== ============================== ============================================ ================== 36 30 98.4 38 GTTCCAATAAGACTTTAGAAGAATTGAAAG # Left flank : AACACGCTTTCTTTTATGTTTTTTGGAATGTTATCACGTTAGAATAGTCCTATTTTTAGTTCACTCTTGTATTAGAGAATTAAATTTGAAATCATTCTATAAGAGGGTTTTGGAAGTCTTTAGTAACTAAAAGTTACTATCAGACAAAGAGTTACAAAATTTTGAGGTTTTTGTAACGAAATTTTTTCGGAATTTTGAACGGGGTCTTTTTAGAGCTTCTCTGATACTCTCTCCTCGTGGAAATTTAACCTTTTTGAATTTAAGGATGTTTTAAGGCTTTGTTTTTGATTTTGGCTTTTATTTTGTCTCTGGAAGTCTCATGGACAAGATTGGACATGGAGGAAAAAGAGTAAGTTCAGGCGAGTGAGTGCTTTGAAGTCTTCTCTAGTGGCTTGGATTCGAGCTTTTTGAGGGGATTTTTATTGACCCTTTGTGGAAAGGCTTATAAATTTCAAGTTCTCTAATTACTTTGTAGGGAGTTTAGAGGAAAATTCGCCCCT # Right flank : ATCCTTAGCACTATTCTCGGGCGACTCTGTTGATGAGCCTTAGTATGTAGCCATTCTCTTCAACAAGCGTTGCCCCTCTATTTCTCGGGACGCCAAGTTCAACTGCACCATTAATCCCGTGCTCCTTCAGGAAGTCGTGAGCCTTTGCCTTTATGGCCTCATACTCGCTTCTCTTTATCAGTCCGTAGACCGTTGGCCCCCAGGAGCTTTGGCCACAGCCGTATGTGTTTTCGCTCAAGAACTCCATGATGAGCTTAACGTCTTCCCTGAATTCCCCACCTTGGTACTCTTCAAAGTACTTCCCAACAAGCTTTTGGATTTCGCTTAAGTGTTTTCCAAACTCTTCAATGTTTCTCTCTTTTAGGGCAGGCAGCAGTCCGAGAAGAATCCTGTAGGAGATTTTTTCCGCTATACTGCTTTCTCCTTTTACGCTCTGCATTATTGGTTTTTCTTCTTCCTCATCAAACCCCCTCTTTGTTTCCGGAATTATCAGGAGAAAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAGAAGAATTGAAAG # Alternate repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //