Array 1 86478-85189 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXF01000070.1 Pseudomonas aeruginosa strain ENV-566 PA4_F3_NODE_9_length_205678_cov_30.7688_ID_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 86477 28 100.0 32 ............................ GCGCACCCTGGGCACTTGTCCTCATCCGGTTC 86417 28 100.0 32 ............................ AGGTGGTTGGATAGGTTCATGTCGGCCAGCAT 86357 28 100.0 32 ............................ TCCGGCGGATCATGGCCGAGCGCAAGCTTCGC 86297 28 100.0 32 ............................ TCGAAATGATGGTTCCCTACGAGGACCTGCAG 86237 28 100.0 32 ............................ CCTTTGTGCCGTGCCATGACCATGACCAGGCC 86177 28 100.0 32 ............................ AGCAGAACAAGGAGCATTCGATAAGCCACACG 86117 28 100.0 32 ............................ GGGCAGATTCACGTCGTGTGCCCCTTCACATG 86057 28 100.0 33 ............................ CTCAAGCTGGGTCTGCCCAACCGTGGCGGAATA 85996 28 100.0 32 ............................ TTTCGCGCTGCCTGCTCAGCACGGAGCATGTC 85936 28 100.0 32 ............................ TCGTTGACCCGCTGGCGCCAGAGCATTTCGCG 85876 28 100.0 32 ............................ TGGAGCAGGTCAGCACCGCGCTGGCCGCGCAA 85816 28 100.0 32 ............................ ATGATCGGATTGCCCTTCTCGTCGCGCTCGAT 85756 28 100.0 32 ............................ ATCTCAAAATCGTCGCAGCCAGTTAGCAAACT 85696 28 100.0 32 ............................ AAGCACTCTGGTATGCGCTGGTTGCAAAGTAC 85636 28 100.0 32 ............................ ATGTCTCACCTCGCGTTCGCGTGCATGCGGCT 85576 28 100.0 32 ............................ GTCTACGGATTCGCCGGATTCGTGCCTGAGTG 85516 28 100.0 32 ............................ ATCGCCGTCAGAGCCGCCACCGCTGCCGCCAG 85456 28 100.0 32 ............................ ATTATGCGAGGCCACTTTTGGTACCGGCAGAG 85396 28 100.0 32 ............................ TATCCCTCCCTCTTTTGGCATGTGTCAAAACA 85336 28 100.0 32 ............................ CTCCCCAGCGCAGGCCGAGCAGGCAGAGGCGG 85276 28 100.0 32 ............................ AAGCAGCGCGAAGCGTTTTTGAAGCACCTGGG 85216 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAAGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGTCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCAGACAGGAAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAACAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGTGAATGCCGCCATAGACGGTATCCGCCGGTCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATTCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGGTGCCGGGCCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCACTAAGCAACAGCGCCCCCCCTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 139-1248 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXF01000013.1 Pseudomonas aeruginosa strain ENV-566 PA4_F3_NODE_36_length_48882_cov_28.3533_ID_71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 139 28 100.0 32 ............................ TTGGCGCGGATCCAGTCCGCCTCGTTGTCGAA 199 28 100.0 32 ............................ TACAGCATCAGCGAAACCGTCTGTGAGGATTG 259 28 100.0 32 ............................ AACGACGAGGCGCGTCCCTACGGCGCCATAGT 319 28 100.0 32 ............................ AAGATCATGGTGCGGCGCGCTGCTTTTTTTCC 379 28 100.0 32 ............................ AACTCGTGCTTGATCGCCTTCTGCCTGGCCTC 439 28 100.0 32 ............................ GGCACGCGAACGCCTGGTGGCCTTGAGTAGGT 499 28 100.0 32 ............................ ACCGGATAGTTCGCGCCGTTCTGTGCGTTCGC 559 28 100.0 32 ............................ TTGGTGGCCTCCGCTGTCTGCCTCATGAAGCC 619 28 100.0 32 ............................ TCGATCTCGCGCAGTTCCTTGCGGATGTGGTC 679 28 100.0 33 ............................ TGTTCTGGGGTTAGGCTGCCGGCGATCATTTCT 740 28 100.0 32 ............................ AGCACGGCATCAACTTCAGCCTGGCGATCATT 800 28 100.0 32 ............................ TTGCCGAACGGGTTGTTCTTCACGAACGCGCA 860 28 100.0 32 ............................ TGGGAGGGATGCCACTGTGACCGTCGCCCTAC 920 28 100.0 33 ............................ TGGTCGAGCCGACCGATGTAGCGCGCATCTGTT 981 28 100.0 32 ............................ ATCAGCACCCGGCGGCATGGCCCGCGCCGTGC 1041 28 100.0 32 ............................ ACACCAGCAGGGCGACGGTCACAGCGGCATCC 1101 28 100.0 32 ............................ CACCGCCCCGCCTCTACTTACAAACCGCCTTA 1161 28 100.0 32 ............................ TTTTCCGTAGCCTGCCCGGACATTGCCCTGGC 1221 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : AACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACGTCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCCCGCCCATCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10460-9773 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXF01000013.1 Pseudomonas aeruginosa strain ENV-566 PA4_F3_NODE_36_length_48882_cov_28.3533_ID_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10459 28 100.0 32 ............................ ACCTGGCAGACGTTCGTTCACCTCTGGCGTAG 10399 28 100.0 32 ............................ ACCGGGCCGACGACACCACGCCGTTAGGAGAC 10339 28 100.0 32 ............................ TCGGCGTCACGCTTGAAGATGCCCCAGTTCTT 10279 28 100.0 32 ............................ ATCGGAAAAGCAGGAACCAGCGGTACGCTGCC 10219 28 100.0 32 ............................ AGACACCGCCGGCGGTGCCGAGGCCGACCAGT 10159 28 100.0 32 ............................ TCTAGGGCGCCACGGAAGCCCACATAACCCAG 10099 28 100.0 32 ............................ GGATGCAGCCTCGACCTGCTTGGCGGCCCCCT 10039 28 100.0 32 ............................ TTGGTGGCGTCGGCGTCGATGTGCAGGCCCGG 9979 28 100.0 32 ............................ ATGCCGAGTACGTCGAGCAGCGGAGACGCATG 9919 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 9859 27 89.3 32 A....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 9800 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGGTGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGCTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //