Array 1 3146-2787 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPCC01000175.1 Campylobacter concisus strain AAUH-40UCf 1098004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3145 30 100.0 35 .............................. AAATTCCTCCTTTCTGAGGAGTTTTATAATAAGCC 3080 30 100.0 34 .............................. ATTATAGGTTCTGGAGCTTTAGAACATCCATTAA 3016 30 100.0 36 .............................. GCCGCACTTCTAGCGATAATAGAAATCCTTAAAGGG 2950 30 100.0 38 .............................. TCATGGGAGCGTTCAACATCTTCAACAGTGCTGGTGCG 2882 30 100.0 36 .............................. CTGCGCACGTTGGTGTCGTTTTCTAGGTCGTCTAGG 2816 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTCAAGATGATCTCGCGCCTTTGTGAGACGCTCACGGTGGGTGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAAGGCTTTAGGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAATGCTTGAAATTTAGGGCTTGGCGTATTTACACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : AACGCAGAAGCGACAAATTTAAAAGCCAAAGATTTTCAGAGAAGAGATTTAAATAATATAATTGCTATCTTGCAAAGATGTATCAAACAAACGATAATATTGTTTTATGCAGATACTTCGAAAAACCAAAACCCCAGCCAATACAGCAAAAAAAGAAACTAGAAATAATAATGAAATAGACTAAGCATAAACCAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGCTTTGAATTCTCCTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATGCCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCAGCTAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAATAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAATATCTCTTTTGCTTTTTTAATATCATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 11309-9651 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPCC01000007.1 Campylobacter concisus strain AAUH-40UCf 1097836, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 11308 37 100.0 39 ..................................... TCGGGTGATTTGCGATAAATAATAACTTTTTCATTTTGT 11232 37 100.0 43 ..................................... TCTTCATGGATATGCTCTTGTTTGCCCACGAAGAAAATTTTTA 11152 37 100.0 42 ..................................... TGACAACTGATTTGACCGAAGCCAAAACGCTATCAATATGAA 11073 37 100.0 39 ..................................... CAAATGCTGCAAAAGCCAAGACGGCTAATATAGCTGTCA 10997 37 100.0 40 ..................................... TCAACTCCGACAAAGTCAAGAGAGTAGAATTCAAGCTTGA 10920 37 100.0 38 ..................................... GAAATCGAGGATATGGCTTGGAATGGTAGGCTCCAAGT 10845 37 100.0 46 ..................................... TAACTCTGGATGGAATCTATCTCTCTCATAAAATTCGAGAAGTTTC 10762 37 100.0 38 ..................................... GTTAAAGCTATATCAAGGCGATACTGGTGCATGGCCAA 10687 37 97.3 36 ................A.................... TTTGTCTGATTAGATCAAGCACTGCTTTTTCATAGC 10614 37 100.0 42 ..................................... ACCAGCCATTGGTTCCGCCTCCTGAACAAAGCAGGCAAAACT 10535 37 100.0 45 ..................................... ATCTCGCGGTGGATTTTGGGTTTAATGCTATAGAAGCATCTTCAC 10453 37 100.0 44 ..................................... AATCTCCTGTAGATAAAAAACGATAATTTGGTTGTAGCATGTGT 10372 37 100.0 44 ..................................... CCTTCTCTAGAGATTTCTGATTCCAGATATTTTTCTGGGGACAA 10291 37 97.3 36 ..................A.................. ACATGTTACACTCCTTATCTTAGTTCTATTATATGC 10218 37 97.3 35 .................A................... CATCTTACATATTTGTTACGGTAGATCTGGATAGC 10146 37 100.0 40 ..................................... ATAAAGACTGCTCCCCACTGAGCAATGTCTGTGTGGACGT 10069 37 100.0 38 ..................................... GGCTGAACAACCCATTCTGCAACTTTCTTTTGTATTTT 9994 37 100.0 40 ..................................... GTTGCTGCAAGAAAGCAAGCACGAGGCTCGCCAACTGCAA 9917 37 100.0 42 ..................................... TTGCGACCTCTCCTAGATCGCGCACAATATTGACAATATGAA 9838 37 100.0 42 ..................................... ATTTTCATAAACAGCCCAACAATTATTCTCTGCATGACATAC 9759 37 94.6 35 ..TA................................. TCTATATATGGCTTCATTTCGCCAAAACCAGTAAC 9687 37 91.9 0 ...C.......T........................T | ========== ====== ====== ====== ===================================== ============================================== ================== 22 37 99.0 40 ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : AAAAGCTGCATGGCAAAAAGCGAGACCTTAGGTGATGGCAAGATATTTTGCCCAAGCGACACCTACGTCTAAGCGCCTTTTTTAGGGATTTGATTTTCGAACTTTTATAAATTTCAAAACGCCCTTTTTACCGCGTTTTTATGTTTTATTAAGTTTCAAAATCTTCGAAAATCTCAAATTTCCCTATCCCAAAAAAACTTTCTCGAACTTTTGCATTTTTGCACTTTTAAAGTTGCCTTTTTTAGGCACTTAGCATAGAGCCCAAATTTGCCAAAATTCGAAAATCACACAAATTTTCACTTTTCATTTTAGATTTTCGAACTTTTTAGCTTTTATAAATGCCCTTAAACTCGCTATCTTAAGCTACTTGTAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCACCTATTAATAGTTCTTTTAAAACTCATTGTTAATTTACAAGCGTTTTTTGGGCT # Right flank : AGACATATCTATCGAGCATAGTTCTCAAGCATTAATTCATAGATACATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGCTAAATTGACTATATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGACATATGGGGCGCTTCATCTTTTGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGTCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //