Array 1 81927-80263 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURF01000037.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002073 CFSAN002073_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 81926 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 81865 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 81804 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 81743 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 81676 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 81615 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 81554 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 81493 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 81432 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 81371 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 81310 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 81249 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 81188 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 81127 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 81066 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 81005 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 80944 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 80883 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 80822 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 80719 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 80658 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 80597 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 80536 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 80475 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 80414 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 80353 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 80292 29 96.6 0 A............................ | A [80265] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 99311-98185 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURF01000037.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002073 CFSAN002073_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99310 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 99249 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 99188 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 99127 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 99066 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 99005 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98944 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 98883 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 98822 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98761 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98700 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98639 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98578 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 98517 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 98456 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 98395 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 98334 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 98273 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 98212 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //