Array 1 640434-639926 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080635.1 Shewanella putrefaciens strain YZ-J chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 640433 28 100.0 32 ............................ TCTGGATCAATATCAATATCTACTTCAGCAAA 640373 28 100.0 32 ............................ TAGAAGCGCATGCAGGCAATGGGTGAAGACAT 640313 28 100.0 32 ............................ AGAATCATAGCCTTCTACATTGTGCAGCGGAT 640253 28 100.0 32 ............................ TGCATCGTCATTAGCTGGCAATTCAGGCTTAG 640193 28 100.0 32 ............................ TGCCATATCGGCGGCGGCATCAATGTAATTTT 640133 28 100.0 32 ............................ ATTTTAGGAATAAATCATATATTTGTAGTTAA 640073 28 100.0 32 ............................ CAATTGAGATTACTTTGGCTGGTTGTCGAAAC 640013 28 100.0 32 ............................ AATCATCGACATTAATACCGATGAACTTTATG 639953 28 92.9 0 ..........................TG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACGGGGTCTGCAGCGATAACCAATTTGTAGAACGCTATAACCAAGGGCATCAACAGTATCTCGTCAATAAGCGTTTGGCGGAAATCGCAGACCGTTTACACACTATTGATAGTGAGATCAGCAGTATTAATACCAAACTCAATAATCTCACCGATAAAGCCGACTTATTAAGGCAAAAAAATATCCTCTTAAATGAAAAAAATCATCTTCTAGATGAAAAAGCCCGCCTACGCCAAGGAAATATTGAGTTTAAATTTAGATTCTAACCATAAAAATCTAGCCATCCACAAAGCCAATTCAAAAGAGTAAACCCAAACAAAAATGTTAAAAGGAACAAGCCGTAAATAAGGCTATTTTAGGATGACTCACCCATACTTCTATTGCATTTAGAAATAAGCTATAAATACAAAAGGTTACAATAGATGATTTTTAAGAAGGTAAAAATACGTTTTTTATCCTAACTGCCTGTTGTAACTTTATTTTATTGATTTATTCTACA # Right flank : TCACCAACAATGCAAAACTGATCTACTTGTTTTCACTATCAAAGATGGGACATACCCAACTCTCTATGGATTAACAATCAAAACCGAGGTGACAGTATTTTACTCTTCCCTTCGAAATTGCCTCAGGGCATTTGCGTTCGTTGCGTGAGCGAGGCATGGTCATTCTCGTGCATATCTGGACCCATCCATTGCACTTCACAACATTCAGGCATCTTACCTATCAGATACCGAGATAGCGTCAGTCGAATCAGGGACGAGCAGTCCTTCTTGGTCGACTCTTGATTAAGAATAAGGAGGGAAAGCCCCACGACTTTTATTCACCTCGGCCGTAAGGCCGCAATGACTAACAATGTAGAAAGATGGGACACTCTAACCACCAGCAAAAGTATACGATGTTACACTTTTAGTAACTATTTCAGTGCTTAAATCTCAAAAAGTGTAGCTAAGTACACCTGAAACTTACCCAAGTCACCAGACCAAAAAACAAAACCCCAATTCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1986206-1989176 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080635.1 Shewanella putrefaciens strain YZ-J chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1986206 28 100.0 32 ............................ AGTCACGAAAGCTGCTACAGGCCACGCATAGC 1986266 28 100.0 32 ............................ TTCACGGATAGAGAAGGCTTCTCTTAACAATC 1986326 28 100.0 32 ............................ TCTGAGATTACTCTAATTTGCGGTACTGAAGT 1986386 28 100.0 32 ............................ ACATTGACGTCTAAGCCACTTGGTTTTAGCTT 1986446 28 100.0 32 ............................ CACCAGTGCAATAAGAGTTTCCTCAGCCGAAA 1986506 28 100.0 32 ............................ TTATATGGTTCGTTCTTTAACTACTGGTAAAA 1986566 28 100.0 32 ............................ ATGCAGCTAATCCCGCAATGCACCATGTGATC 1986626 28 100.0 32 ............................ TCAGACAGATAGGAAAAAATCAGTTCGTTGGT 1986686 28 100.0 32 ............................ TCTAAGTCATTGAATACCATTGCTTATCTTGT 1986746 28 100.0 32 ............................ AATCGCATTTTCAACATCACGCATACGCAAAA 1986806 28 100.0 32 ............................ TATCAAAGTCGGGCATCACAGCGAAAGTCGTC 1986866 28 100.0 32 ............................ ATTAGTAACATAGGTGTCACCAAGCCACGCCA 1986926 28 96.4 32 ..........G................. GAGGTACGATGCCGAAGGTTTTAACGAAAAAC 1986986 28 100.0 32 ............................ GTCAAGTAAAAATAAGACTGCACCAAACAAAT 1987046 28 100.0 32 ............................ CAGCCTTTAGGCCGCAGAACATGGACTAATCC 1987106 28 100.0 32 ............................ AACAACTCAGAACTAGGATTTTTAAAATCAGA 1987166 28 100.0 32 ............................ TTCACCCTCAATATCGCGGTCAAAGGCTTCTA 1987226 28 100.0 32 ............................ AGTACCCCTTCCATTATCAAATTCCCGCAAGC 1987286 28 100.0 32 ............................ TTTGCGCCAGAAAGCACGAGATTTATAGATAA 1987346 28 100.0 32 ............................ ATCGGGGCAATCATACCCCGACGGGGATGTTG 1987406 28 100.0 32 ............................ TTCGTGCGGAGCTGGGCTAGGTTTTGGGGCTC 1987466 28 100.0 32 ............................ TTTATTCCCGCCGTGAGCATTTCCCTGTAGCC 1987526 28 100.0 32 ............................ AACAGGAAGTATTCCTTGGTGAACGTAATCGC 1987586 28 100.0 32 ............................ GTTGGAGGACACACCTTTGATAAATCAACTGT 1987646 28 100.0 32 ............................ TTTTGGCAAGTCCCAATCATAGATTGGATCTT 1987706 28 100.0 32 ............................ TTAACCCCGGTTCGCAAGATTCAGCATACGTA 1987766 28 100.0 32 ............................ CGATTGGTTAACATCACCGGTTAGTGATTTTT 1987826 28 100.0 32 ............................ ATTTTGTACGTTTCGGTCGTGTCAGGGAAGTC 1987886 28 100.0 33 ............................ TTCCGTGCCGATAGCCGCTTCGAACGTTCCGAT 1987947 28 100.0 32 ............................ TATAAGCGCACCCATCTTTAGGGGTTTCAGGC 1988007 28 100.0 32 ............................ ATTGCAAAAAGAGATCAGCGACAACATAACGT 1988067 28 100.0 32 ............................ TGCCAGCCCTGAAACCACAATAGACTATGTTG 1988127 28 100.0 32 ............................ ACTGACTTCTGGCGTGGATATTAGTTTTTTAA 1988187 28 100.0 32 ............................ TGGTAGGAGTAAGGCTTTAATATTATTAGTAA 1988247 28 96.4 32 ..........G................. ATCGCCCGTGATAGCATCAACAGCGGCACTAA 1988307 28 96.4 32 ..........G................. TATAGCATTTTCTACATCACGCATTCTAAGAA 1988367 28 96.4 32 ..........G................. TTGCGATATTAATAACCGCATATAATCTGCTA 1988427 28 96.4 32 ..........G................. TTGGCGATTCTGGTAATGCTCGGTTAAGGCGA 1988487 28 96.4 32 ..........G................. GCATCGATAACGATGCTTGGCTCTGCTGGTGC 1988547 28 96.4 32 ..........G................. ATTAGAAGAATTATAATGATTAGTGAACTGTT 1988607 28 96.4 32 ..........G................. TGTTGAGGCTGGCGAGTCTGTTACAGCTAAAC 1988667 28 96.4 32 ..........G................. GCTCCGCTAAACATCAAGGGGATAAATCCCCT 1988727 28 96.4 32 ..........G................. CAGATGACAATTTCGCACGCTATTCAACTTAA 1988787 28 96.4 32 ..........G................. TCAATTACAACGCTTGGATTATCCATGTTTCG 1988847 28 96.4 32 ..........G................. TGAGTCGGTTTCATCATTAATTTCATCTAATT 1988907 28 96.4 32 ..........G................. GTCATCTGAAATCTGTGACTTCTTGACGTTTG 1988967 28 96.4 32 ..........G................. TTGGAGTTGGTGATGATTTTGAAGTGAACTCT 1989027 28 100.0 32 ............................ ATAGCTCAAAGCCAGCATGCCACTCTGCATTA 1989087 28 92.9 32 ..........G..............C.. TTCGTCATCAAACTTAAGCTGGATAGCCTGAG 1989147 28 85.7 0 ..........G...T.....T.....T. | TG [1989169] ========== ====== ====== ====== ============================ ================================= ================== 50 28 98.6 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : AATATGCTTACTTTAAACGCCGCCACTTTAAGTCACCTGACAAACTGCGCAGAAATATCGATGCTCGTGCGATAGTGATCGCCCAAAAAAATGGCTTTGATATTAATGAAGTTAAGACGCGTTTATTAGCGTCGATAGATAATCTCGATACTAAATCTAAATTGCCATTTATCAACTTGCGAAGTTTATCAACGGAGAAAGATGTCAGTCCCGCAGATCGCAGAAAGTTTTTATTGTTTATTGAGTGTGAAAAAGTCACCAAACCTAGTCAAAATAATGGGCTATTTAATTGCTACGGGCTTAGCCGTCGTGCTCAAACAGAACAAGCCGCAGTCCCTTGGTTTGAAGGTTAATTTAGAGACCTAAAATACCCTTTATTTTTGCTCTTTAAAAAATTAGTTTTAAAACAAAAAGTTACAACAGTTGATATTTAGAAAGGTAAAAGTACGTTTTTTTACCTATCTGCCTGTTGTAACTTATTTTTTTGCAGATAAGCTATT # Right flank : ATAGCGGTAAGGGTGAGTGCTAATATTGGCGTTAATGTCGTTGTTAACTTGTAGTCTTATCTTAAATCAGCATAATGCTTCGAACTCCCTTTTAACTTTAAGCCTAGTATTGTGATGTATGGCGTCAGCTAGAGAGTGCCAGCCCATATCGGCTATTGATGAGTTCAATAATTGATTACGGCCTTACGATACTTTTTGAATATTTTATAACACCTTGATAAAGGATAGATTTCCCCTTTGACTCGCTCCCGCCAATCAACCACTCAAGCCTCAGTGGTTAAGCCTTTAGCCTCAAACGGTTCTGTATCTGTAAGTCGACTCTCGACTGAAGTGCAACGTGCATTTTTGCAAGGAGGGGTATTGTCGACGCATATTCAAGGATTTAGTGCTCGGGAAAGTCAAATGCAGATGGCACAAGGGGTAAGTGAGGCCATTGCATCTAAAGGTAATTTGGTGATTGAGGCGGGCACGGGGGTTGGAAAAACCTTTGCCTATTTGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //