Array 1 549-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANPP01000001.1 Streptococcus agalactiae MRI Z1-218 ctg7180000000418, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 548 36 100.0 30 .................................... ATAATTTTGTACATTTCATCGCACCAAGTT 482 36 100.0 30 .................................... AAATAACACTTTGGAAGTTGAGTTTAATAA 416 36 100.0 30 .................................... TCTGTGATGTCTTTAAAAGCATAGACAACT 350 36 100.0 30 .................................... TTTTTATTATGGAAAGTAATCATTATTTTT 284 36 100.0 30 .................................... ACGTCTTCAGGTGTTATTCTTGGGTCTTCT 218 36 100.0 30 .................................... AATTTAAAATCTTCATCTTCTATACGTTTG 152 36 100.0 30 .................................... TAAAGCTAACGTTAGTCGTTCGCTCGTGGT 86 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAAAAGCAATGGAAGCTAACGAGATTGCTGTTTTAGAGCTGTGCTGTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 44813-43787 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANPP01000006.1 Streptococcus agalactiae MRI Z1-218 ctg7180000000423, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44812 36 100.0 30 .................................... GCCTGCCCCACAAAAAAGTATATTATTATT 44746 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 44680 36 100.0 30 .................................... AAATTGCTCTATCAGTCAATAAAGCAAGAT 44614 36 100.0 30 .................................... TCATATTGAGTGGTTGTTTAATTAAATTGA 44548 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 44482 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 44416 36 100.0 30 .................................... AAAAAGCAATGGAAGCTAACGAGATTGCTA 44350 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 44284 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 44218 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 44152 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 44086 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 44020 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 43954 36 100.0 30 .................................... TCAGCGAGATGCTCTAAGTAAGCATGTTGA 43888 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 43822 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GAGCTGTGCTGTTTCGAATGGTTCCAAAACAAAAAGCAATGGAAGCTAACGAGATTGC # Right flank : ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGCTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //