Array 1 8692-7992 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8691 37 100.0 36 ..................................... AATCTAAATAATCCATAACTTTCTTCAACTTTGTTT 8618 37 100.0 35 ..................................... TTGCATAGAATGGATTTAATTTTTCCTCTAACCAC 8546 37 100.0 37 ..................................... CCTAAATAAAGCGGCTCTGATGAAAATATCCCATCGT 8472 37 100.0 36 ..................................... GCAATTGTAGTATTTGTTGTCATTTCAACAAGTTTA 8399 37 100.0 36 ..................................... TAACTTCTAATAACAGTCTTTGTTTTAGTAGTTCTT 8326 37 94.6 38 ........TG........................... AATTTTCTATCATTATATACCTTGAAGATATTCTAATA 8251 37 94.6 37 ........TA........................... CTGAAATCTTCCCATCTTGTTCCTTTGAATATCTCTT 8177 37 94.6 38 ........TA........................... AGGTTAAAGACCATGAACATAAGTATAAAACAATAGAT 8102 37 94.6 37 ........TA........................... ACTGTCCTTAAAATTACTCTTTTTGCACTGTCTCCGT 8028 37 89.2 0 ........TA.....................AT.... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 96.8 37 GTTTGAATACCTCATCCATTAAAACAAGGATGGAAAC # Left flank : AAACCTCTAAAAGAAACCTTTAAAAGAAACTTTTAAAAAGTTTCATCAAAAGGGATGCACTGACCTGAAACTTTTAAAAAGTTTCATCAAAGGGATGCATTGCTTCGCTTCGCTCAGCAATGCCTCTTAGGGAGTTTAATATCATGTATTAAATTTCTTAATTAACTTTTCTTGCTTTTATAAAGGGGGTTGTGGATTTTGGTATTAGAAAATTGGAAAAAAGTATTACTGATTTTTTCAAATTAAAATTGAGGTTTTTTAATTATTTTAGTTTTTTGGTTTTATTTTGTATGTTTTAAGTTTGGATTGGTTTTAAATTGTGTAATATCTCTGCTAATTATTGAGATTTATTGGCGTGGTTGTGCATTGGATTTATAAATAATTTGCACAATCTTTCTTACTTTTATAAAGGGTTTGATAATCATACAGTAAGAAAATTCGGGTTGAAAAAGAAAGATTTATATAGGAGTTTAGGTATAAAATAAGGATGAAGTTATAGG # Right flank : TGAGGAATTGCAAAGGAAAGGAATAATTTTTTCTTTATTTAAGTAAATTTGATTTTTAAACTGTCTTTTCTTGACCTATTATGTACGATAAATACCCTTCTTCCAGTAGCTCAATTTTTAAACCTAATTTTGCTGGTATTACGTTGGTTTCAGTATTCTCGGCAATATAATTTGCCTCCTTTATGGGGTTAGTCATCTTAACTCCCATGTGGTTCATAATTATTAACTCTGGCTTTTTGTTCATTGAATTTACTAAATCAATGACATCATTTGAGCATAGATGCCCCCTTATTCGTTCATTTTTTTTCCTAACAACATTTGCAATAAAAACTCTAACACCATCGAAGTCCTCAACTAATGAATCTATATATTCCGTATCTCCAGTATAGCCGATATCTCCTTTCTTAGTTTTTATTCTTGCTCCAATACCATAAGGATCTCCGTGTTTTGTTTTTGTTGCAATCAATTCTATATCATAAACTTTTGCAGAATCCTTTGGA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATACCTCATCCATTAAAACAAGGATGGAAAC # Alternate repeat : GTTTGAATTACTCATCCATTAAAACAAGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 221598-220645 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================================================================================== ================== 221597 30 100.0 36 .............................. AGATACATGGTCTAAGGAATATTTTCAACAACGAAA 221531 30 100.0 39 .............................. AACTGCTTTAACCTCTCTCAACACTAAATCCACTTCTAA 221462 30 100.0 39 .............................. TAAGTTTTCTAATTTTGTGCCACGAAACACCAACCTCGA 221393 30 100.0 37 .............................. TATACTCTCCGTTGCTTGTGCTATCTCACTAATATAA 221326 30 100.0 38 .............................. ATGTTCTGATAATTGTTATCCTCTGCCTCCAAATATGA 221258 30 100.0 38 .............................. ATTACATATAAATATATTGATGAATTAATAAAATTTAA 221190 30 100.0 38 .............................. TCCATTAGGTCGTTTATTTGGGCTTCTTTTTCAAAAAA 221122 30 100.0 41 .............................. ATTACATGCTGGCAATGGGTTTTGCTATGATTATGACTGTG 221051 30 100.0 38 .............................. TTATATCTTCTCTTCTCTATCTTCTTTTTATGTTAGTG 220983 30 96.7 39 .............................T TACTGTATAGGTAATTCACTCCACAAGTCCTTTAAATAG 220914 30 93.3 210 .........................A...T AGAAAAAAGAAGTTTTTTATCAAAATTAAGTGATTTGTTAAAATCACCTTAGGATGGAAATTTTATTTTTTAGTAGAGGCACTGCCGAGCGTAGCGAGGCGGTGCATCCGATTTGGATGAAACTTTTTTTAAAAGGTTTCTTATAGAAGCTAAGAGGCATTGCTGAGCGAAGCGAAGCAATGCATCCCTTTTGATGAAACTTTTCTAAAG 220674 30 80.0 0 ..TC...T...G..T..............T | ========== ====== ====== ====== ============================== ================================================================================================================================================================================================================== ================== 12 30 97.5 54 TTAAAATCAGACCCATAGGGGGATGGAAAC # Left flank : TGCGGTAATAAATGATGCCACTTGAAGTTCCATAATCCCACCAAGCAACAAAAATTTATCATTATAATTAATGACAAATTATCCACCACTATGTATATAAATATTACGGTGTGTTAAATATTGTAAGTAGACTACTCTCCCTCGCTAAAAATTTTTATTTTTTGATTTTAAGGATTTTTAGGGGTTATTTTTTAATTTTAAGGATTTTTATCAAATTTCGAAGGGTGCTTTATTTTGAAAAATTTGCATATTTAAATTTAATGATTTATTGAGATTTTTTGATTTAAAAACCTAATAGATTATATTTCAAATTTTCCCCGATTGATAGGGTTTATTTAACGATTTAAAACGATTTTAAAGAATTATTTCGATTTTAAACGATTTTTAGGGAAGTGCAGAGGTATATAAATGAACACTGTTAATACCCCTTCGAAAATTAACGTCCCAAAAAGAAGCAAATAGAAAACTTTATATAGGAAAAAGAGCAAAATATTGTCCTA # Right flank : CAAAAAATAAATAAAGACAAAATAACTTAGAGAATTTTTAAACTAAATAGATGATACTATGTATGTGGTTATAGTTTATGATGTAAATGTTTCAAGAGTTAATAAAGTCAAAAAATTCCTCAGGCAACATTTAAATTGGGTTCAAAATAGTGTATTCGAAGGAGAAATAACAAAAGCAGAATTTGAAAGGATAAAAGACGGGCTTTTAAATATAATCGATGAGAATGAGGATTCAATAATAATCTACAAACTCAAATCAAAACCAAGTAGAGAAATTTATGGAATAGAGAAAAATCCTATTGATGATATTATCTAAAACCATGCTATTAACGGCTCATATTCCTTTTGCCCAGTTAAATGTTTAATCAACTTATATGCCTCTAACCTTATCAACCTCTTTTTTGTAACGTTCTTTTTTAATGTTGGGTGTTTGACACTCTTTTCCATCTCTTCATTAAATGCCCTTAGAACAATCTTTTTACCATCATCATTCAACAACA # Questionable array : NO Score: 4.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-1.61, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAAAATCAGACCCATAGGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 295799-296134 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 295799 37 89.2 37 .......G..A.............A..G......... TGGGGTTAGGTGACTATGGAGATGTGATTTCCAGAGA 295873 37 100.0 35 ..................................... CTGAGGGGGAAGAATGATTGATTTGGAAAAATTAG 295945 37 100.0 37 ..................................... TAAGGTCAATAGAGAAGACAAACAAAGCACTTGAGTA 296019 37 100.0 42 ..................................... AAAAAATTGAAAAACCAGATATTAAACCAGAAATTAAACCTG 296098 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 97.8 38 GTTTCCATCCTTGTTTTAATGGATGAGATATTCAAAC # Left flank : CTGTCTGAAGAAGAAATGCAGATATTCAATCAGAGAAGAAAAGAAATTTCAGAAAAGATTTTGAGCATGGATGAAAAAGAGCTTTTTGATGTTAGAGAGGTTGATATCGAACCCCCAAGAAAAGCAAGATTATTCCCATCGATAAAATGTCAAGAATGTGGAGAATATTTTATGGAAATTAAGGGAAGGGTTATCAATGGCAAAATTGTTTGCAAAGAATGTTTCGAAAAATTGTTGAAGAATTAATTAAAGTAAAATTTTAATACTTTGCTTTTTGTTTTTTTAATTGTTATTTTTTATTACCCTAATCCCCACCAAAAATATAAGTTCTAATTTTTATCATGCATTTGAATATTTACAAATGTTGATTAATTTTTTAATGAAGTTTTTTGTAGAAAATTGCTAATGCCATTTTACTTTTTTTATATAAAGCAACTAAAAAACAGAGTTTATATTTTGATTTTAAAAATTTAAATCTATAAGTATTATCTAATTCTTCT # Right flank : CCCTATAACTTTGTCCTTATTTTATGCCCAAACTCCTATATAAATCTTTCTTTTTCAACTCGAATTTTCTTACTACCCAATTATCAAACCCTTTATAAAAGTAAGAAAGATTGTGCAAGTTCTTTTTAAATCCAACGCACAACCACGCTAACAAATCTCCACAATTAGAACTTATTTTACACAATCTAAAATCAACTCAAACTTAAAACCACAAAAATAAAACCAAAAAACTAAAATAATTAAAAAATCTCAATTTTAATTCAAAAAAATCAGTAATACTTTTCCTCAATTTTCTAGTACCAAAATTCAACAGGGGGTATATAAAAGCAAGAAAAGTTAATTAAGAAATTTAATACATGATATTAAACTCCCTAAGAAGCACTGCCGAGCGAAGCGAAGCGGTGCATCCCTTTTGATGAAATCGAACCGTAAGGTTCGAGCTGCAAAACCGATAGGTTTTGCTTAACTTTTTTAAAGTTTCTTTTAGAGGTTTCATGGAG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATGAGATATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 4 592560-593764 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================================================= ================== 592560 31 100.0 45 ............................... TACTTCCCACCTATACATTTTTTTCAATAATTTTTCCATCATCTA 592636 31 100.0 36 ............................... GGAACACCATTCAATATTATGAATCTAAATCTTGGA 592703 31 100.0 35 ............................... GAGAAACTTTGAGTTACAAGTATTGCAAACCATAA 592769 31 100.0 61 ............................... GAGAGGGACGACATTAGTTCATTGGATTGTAGAAGTCAATTGCTTTGGCTTTTGATTGACA 592861 31 100.0 35 ............................... GTCCCTACCATCCAATAAACAGATGGCTCGGGACT 592927 31 100.0 39 ............................... TGCTACTAAAACGCAAAAAGTTTAAGGTTAAAGCAAAGA 592997 31 100.0 36 ............................... ATTTTTAAGAACTTTAAAACCGAAACATATATATAT 593064 31 100.0 47 ............................... AATGGAAAAAGGCACAAAAATGGGCAATATTAAAAATTATTGATTTA 593142 31 100.0 36 ............................... ATATAATCAATATACAATATATACACATGTAGTTTT 593209 31 100.0 39 ............................... TGGTATGATTGTAATTGAATTCTAAATAATCTGATTCGT 593279 31 100.0 41 ............................... CTTTTCTAAACCTCCAAGTGTGCTTCAAATCATTAAGTTAA 593351 31 100.0 39 ............................... CAACAATTTCTATCTTAATATCACTCTTTTCAACAATTT 593421 31 100.0 39 ............................... CAACAATTTCTATCTTAATATCACTCTTTTCAACAATTT 593491 31 100.0 38 ............................... GATGAAGCCCCAAAACCATTAAAAGCCATTTGGAAAGG 593560 31 100.0 39 ............................... GCTGGTGGAGCTGTTAAGTAATTTACATAGATATTAACA 593630 31 100.0 73 ............................... TTTATTTTTACCTAAAAGAGGCACTGCCGAGCGAAGCGAAGTAGTGCATCCCTTTTGATGAAACTTTTCTAAA 593734 31 74.2 0 ...TC...T...G.........AG.AA.... | ========== ====== ====== ====== =============================== ========================================================================= ================== 17 31 98.5 42 GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Left flank : ATTGGAAAATTATTATTGGTTTTATATTCAAAACAAAATTTTTCGGCAAAAATTTTTGTCCAAGACAATTTTTCATAACTCTATATTCCAAGATTTGGATTTTAGTATTATAAAATTCATGAAAAGTATTACTACCCCTCTCTCGCTAAAAATTATTATTTTTTAGTTTACTAAATTTTCAGGCAATATTTTTTAATTTTAAGGATTTTTATCAAATTTCGGAGGGTGCTTTATTTTTAAGAATTTAAATATTTAATTTTATGGATTTATTGAGATTTTTGGATTTTAAGGAATAATAGGAATTATTTCAAGTTTTCCCCGATTGATGAAGTTTATTTAACGATTTAAAACGATTTTAAAAAATTATTTCGAATTTAAACGATTTTTAGAGAAGTGCAGAGGTATATAAATGAACACTGTTAATACCCCTTCGAAAATCAATGCTTTAAAAAGAAGCAAATAGAAACCTTTATATAGGAAAAAGAGCAAAATATTGTCCT # Right flank : TCTTAAATTTCTTTTTTTTTCACTGTTTTATGTTAGGATTGGGTTCTTGAGTATAGTTGTTCGCCAATTTTTTGCACGGATTTAGATGCAACAAAATTATACGGCAAAACTTTGTTTTGCCATTTATTTTTTAAAGGTAATAAACCATATTGCAAAATTCCAAATAAAGGTTAATTATCACTTATACTTATATAATCTAATAGGGATTTCATGCATTTGTAAGGCGAACAACTATAGTTTGTTATTAACTTCATCGTATAACTAAACATGCAAATATTTGCATATATAAATATAACTTTTAAATTGGAACAAATTTTTTGCAATGGTTGTTTTCCCACAAACAAAAAATTAATATGCGGCAAAATCCCAAGGGATTTTGCCAAAAGATATACGGCAAAACCTTCGGTTTTGCCAAAAACCCTTCTAACGCACACAACTATAAATCAACATTTACAAAATATTTAAATTTATGAATGGAGTTTATAGGATTTATGTAAATT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 717057-718059 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 717057 37 100.0 37 ..................................... TTCGCATACTTAAGCTCAGCAGCCACAGGCAATCTTG 717131 37 100.0 40 ..................................... GAAATTACTTGTTTGAAGAAAGAAAGTCAATTAGGGACGT 717208 37 100.0 36 ..................................... ACTTCCAAGGCTTTTCTGAAACATCTAATATGGTTA 717281 37 100.0 37 ..................................... AATCCAATATACGACCTTGGAAAAATTGAATTGCCTC 717355 37 100.0 37 ..................................... ACTAACTTCTTCCCAACTTCATTTCCGTTCTTGTCAA 717429 37 100.0 36 ..................................... ATTACATTCATAGGTCAAACATGGTTGAGTATCTTG 717502 37 100.0 35 ..................................... TTATAGAGCGAAGACGGGGCGGGATGGGAGGGAGA 717574 37 100.0 37 ..................................... AGAGGCATGGCATTGCCAGACGAATTAATGCAATATA 717648 37 100.0 35 ..................................... AGGGAATGGGGGTTAAAGAAAATTATTGAATTAAT 717720 37 97.3 42 ...........................A......... ATATATCGCTGTGTGGTATTCTTATGTATGCGTTCGTTCCGT 717799 37 97.3 42 ...........................A......... ATATATCGCTGTGTGGTATTCTTATGTATGCGTTCGTTCCGT 717878 37 97.3 36 ...........................A......... ATACTATCCACCTATTCGTTTTTTCATATGAAATTT 717951 37 97.3 35 ...........................A......... TAGCCACCAACTTCCAAGTAAAGTGGAGCAAAAAA 718023 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 14 37 99.2 37 GTTTCCATCCTTGTTTTAATGGATGAGGTATTCAAAC # Left flank : AAAAATGATAAAACTGCTCTACTAATTGCCACGTATTTTAGAGGAAATAGAATATTAGATGGAGTATATTTCAAAAAAATCCAAAAAGATGGAAAAGATGCAACTGAGAAGATCATAGAAGTTGTTAAAGGAAAGCATTATCCAAAAATAAATGCGATATTTTTGTATGGGGTTACGTTTGGGGGATTTAATATAGCTGACATATTTAAAATTAATGAAGAAACAAAAAAGCCAGTTATTGTGGTGATAAGAAAAAATCCAAATAGAATAGATATGATAAATGCACTGAGAAAGTATTTTGATGATTGGGAAGAAAGAGCAAAATTATTAAACTCATTTCCAGAACCAGAACCCCTTGAGGGAATTTATGTTCAATATGTTGGTATAGACAGGGAGGGAGTTAAAGAACTCATCAAAAAAACAAGGTTAAAGAGCAAAGTTCCAGAATGTCTTAGAGTTGCCCATTTAATTGGTAGAGGATTTTTGGAGTTATAATTAAT # Right flank : CCCTATAACTTCATCCTTATTTTATACCCAAACTCCTATATAAATTTTTCTTTTTCAACATGATTTTTCTTACTGCATGATTATTAAAACCTTTATAATCTTAAAAACCCTAACGGGTTTTTAATCCCTCCTCGCTTCGCTCGGAGGAAGTAAGAAAGATTGTGCAAATTATTTATAAATCCAATGCACAACAACTCCAATAAATCTCAATAATTAGCGGAGATATTATACAATCCAAAACCAATCCAAACTTAAAACTACAAAAATAAAAACAAATAACTAAAATCTCCCAAAAATCTCAATTTTAATTTGAAAAAATTAGTAATACTTTTTCCCAATTTTCTAGTACCAAAATTCAACAACCCCTTTATAAAAGCAAGAAAAGTTAATTAGGTATTTTAATATCGGATATTAAATTCCCTAAGAGGCACTGCCGAGCGAAGCGAGGCAGTGCATCCGATTTGGATGAAACCTTTTTTAAAGGTTTCAGGTCAGTGCAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATGAGGTATTCAAAC # Alternate repeat : GTTTCCATCCTTGTTTTAATGGATGAGATATTCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 6 739361-738956 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 739360 37 81.1 38 T...................A...T..GTG...G... TTTCGAGTTTTCGAGTGCAGTATTTTCTATCCTTGTTT 739285 37 91.9 36 ........................G..GT........ AACCATCGCCTATTAAATCCACTATATATCTACTCA 739212 37 100.0 36 ..................................... CAGACTTTTTCATAAGCGGTTTTAGTAATTTTACAA 739139 37 100.0 36 ..................................... TGAAGGTGCTTCGATAGTGCTTGATAGGCAAGAAGT 739066 37 100.0 37 ..................................... CGTGAAAATGGTGATGTAGCATGTTTAGAGATATTGC 738992 37 91.9 0 ........................G..AT........ | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 94.1 37 GTTTCCATCCTTGTTTTAATGGATAAGCAATTCAAAC # Left flank : ATTGTATTGGATATTAAAAAATTAGAGTTAAACCATAAGGTTTACACTGTTACTGGTGGATATGTAAAGGTTGTATTTGAGGAATTTGGGGTTTCTGATGAGATGAAAAGATACAAGTTTATCTCCCCATGGGTGGCATTAAATGAAAAGAATTATCTGAAATATAAAGAGTTGGATGAAGACGGGAGAAAAAATTTACTTGAAAAAATCTTAATTGGAAATGTATTATCTATGAGTAAGTATTTAGATTATACTGTTGAAGAGAAGTTAATTGTGGAAATTTTGGATGTTGAAAGTTTAATTGTTAGGTATAAGGGAAACAAGTTCATTGGTTTTAAAGGAGAATTTGAAATTAACTTCGATATCCCAAATTACTTAGGAATTGGGAGAAAAGTTTCCAAAGGATTTGGAAGTGTAGTTAAAGTTAAATAGTAAAACTATACATTTTTCCAAATCTTTATTTAAAAATAAAATATCTTTGTGCTTTTTTTATATATTTC # Right flank : CCTATAACTTCATCCTTATTTTATGCCCAAACTCCTATATAAATCTTTCTTTTTCAACTCGAATTTTCTTACTACCCAATTATCAAACCCTTTATAATCTTAAAAACCCTAACGGGTTTTTAATCCCTCCTCGCTTCGCTCGGAGGAAGTAAGAAAGATTGTGCATATTATTTATAAATCCAATGCACAACCACTCCAATAAATCTCAATAATTAGCAGAGATATTATACAATCCAAAACCAATTTAAACCTAAAACATATAAAATAAAACCAAATAACTAATATCTCTAAAAAATCTAAATTTTAATTCAAAAAAATCAGTAATACTTTTTCCCAATTTTCTAGTACCAAAATTCAACAACCCCTTTATAAAAGCAAGAAAACAAAATTAAGAAATTTAATATATGCTATTAAATTCCCTAAGAGGCATTGCTGAGCGAAGCGAAGCAATGCATCCGATTTGGATGAAACCTTTTTTAAAGGTTTCTTTTAGAGGTTTC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCAATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 7 953001-952222 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 953000 37 100.0 39 ..................................... AATAATACAAAAAATAAAAGATAATAATTTCTATGCATA 952924 37 100.0 38 ..................................... GGTGACACAAATTTAGATGAAATTTTTAACATTATTCA 952849 37 94.6 38 ...........................GT........ AGGCTGGTTGGCTGGGAGCCCGCCAGCGGAAAAGATTT 952774 37 94.6 36 ...........................GT........ CTGTAGATGAATACAAAGCAGGTGTTGAAGCATACG 952701 37 94.6 36 ........................A..C......... GATTTGGCATTAAGACACAAAGAGTTAATATTATCT 952628 37 94.6 36 ........................A..C......... TAGAATTTACGGAAGTTATATAACAGAAGCAGGGAT 952555 37 91.9 41 ........................A..C...C..... GAGGGAAAAAATATAGTTTGCGACTATTACCAGTTAATTGA 952477 37 100.0 35 ..................................... TATTGATAAGATAGCAGACAGAGAATTTGAATATA 952405 37 100.0 37 ..................................... AGAAAGATATTTGAGAACTTGGAGAAGGAGGTTGGGA 952331 37 100.0 36 ..................................... ACCAAAAATTGCCGCAAGGTCGTATGGTTCTTGTTC 952258 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 97.3 37 GTTTCCATCCTTGTTTTAATGGATGAGTAATTCAAAC # Left flank : TCAACCTATCCACATAATAAACATAAACTTTTTCATCATAAACATGCATATTTTATCACCCACGCTACTTTTTACTTGATTTTCTAATATATCTAATCAAATCAAACAAATTATATATGCCTTTCTTTTCAAGCGACCTTTTAGATGAAATTGTAATAACTCTACAAACATATATCCAAAGTACCAATAATATAAACGGAATTATACCACTCATCAATGCTAACAACAACACTGGCAATAAAATAATCCAACAATACTTACTAACAAGTATCTTATAAGCAACATACCAAATATAAACAAACCACAATAAAGCAAGTATTATACCCAAAAATATTCTAACTACATAAATATCAACATACAATATTATTAACGACAATAAAAAACCAACACCAAAAAACATCATAGTATATTTTACAAATCCTATACATACCACCAATAACATTTTTCCAATTATACACATAAATAATTACTATCATTACCACTTAAAATAACAAAACAAT # Right flank : CCTATAACTTCATCCTTATTTTATGCCCAAACTCCTATATAAATCTTTCTTTTTCAACCCGAATTTTCTTACTGTATGATTATCAAACCCTTTATAAGAGTAAGAAAGATTGTGCAAATTATTTATAAATCCAATGCACAACCACTCCAATAAATCTCAATAATTAGCAGAGATTTTACACAATCCAAAACCAACTCAAACTTAAAACATACAAAATAAAACCAAAAAACTAAAATAATTAAAAAATCTCAATTTTAATTTGAAAAAATCAGTAATACTTTTTTCCAATTTTCTAGTACCAAAATTCAACAGGGGGTATATAAAAGCAAGAAAACAAAATTAAGAAATTTAATAGATGATATTAAACTCCCTAAGAGGCACTACCGAGCGAAGCGAGGCAGTGCATCCCTTTTGATGAAACTTTTCTAAAGTTTCATTTAGATCAATTCAACAAAATTTTCTATCATCTTCAATCCAACTTTTCCGCTTTTTTCTGGGTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATGAGTAATTCAAAC # Alternate repeat : GTTTCCATCCTTGTTTTAATGGATAAGCAATTCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 8 1002273-1003293 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1002273 30 100.0 37 .............................. CTTTGTCCAAAACAAAAAATACTACGACGAGGAAACT 1002340 30 100.0 38 .............................. CACATCTTCTACAATTTCTACAATATTCCTCTTTAATA 1002408 30 100.0 40 .............................. CATGTAAGGATTTTCTATAAAAATATCTGCTATTCTAATT 1002478 30 100.0 42 .............................. CTGTTGGTTCTTTTTGTTACTGAGTATGTCTTTTGTGGTATC 1002550 30 100.0 42 .............................. CTGTTGGTTCTTTTTGTTACTGAGTATGTCTTTTGTGGTATC 1002622 30 100.0 38 .............................. CATTCCTTTATCTTTTATTTTTTCTCTTGCCATTTTGA 1002690 30 100.0 46 .............................. CAAATTTATTGCGTTTATCCATGCCATCATTGTTATTTCTTTTGGG 1002766 30 100.0 45 .............................. CACAATTTTTCTACATCCTAAAATTTTGAAATCATTATATCCATA 1002841 30 100.0 44 .............................. CAGATTTTAAACAGTTTTTAACAAGCATTATCAATAACCATGAG 1002915 30 100.0 37 .............................. CATTATAGAGTAATGACTGATGAAAACTATCCTTTTA 1002982 30 100.0 38 .............................. CTTTTCATAATTATCCCCACAAAAACTTTTTTAAAAAT 1003050 30 100.0 38 .............................. TTCGTCTTTGTATATATTCGCACTACTATGACCCTTCT 1003118 30 100.0 42 .............................. TTAAGAGTAATCAACCCTAAAGAGCTGGAAGGTATCCCATAC 1003190 30 100.0 44 .............................. CTTCAATACCTCAGCTTCTTCTTTTGTGTTCATGGCTTGTGCTA 1003264 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 15 30 100.0 41 GTTAAAATCAGACCCTTAGGGGGATGGAAA # Left flank : TTACAGTTGTTTATTTTGGATATTGCAAAAAAGATAAACGCTGATTTAATAATTAGACCTCTATCAAATGAGTTCCCAGTTGACTTAAAGTTAAAAAATTATAATGGAGAAATTTTTTATGTTCTGAAATAATACCCTTCCCTCGCTGAAAATTTTTATTTTTTAGTTTATTCAATTTTTAGGGGTTATTTTTTAATTTTAAGGATTTTTATCAAATTTCGAAGGGTGCTTTATTTTGAAAGATTTGCATATTTAAATTTAATGATTTATTGAGATTTTTGGATTTAAAAACCTAATAGATTATATTTCAAATTTTCCCCGATTAATAGGGTTTATTTAACAATTTAAAACGATTTTAAAAAATTACTTCGAATTTAAACGATTTTTAGGGAAGTGCAGAGGTATATAAATGAACAGTGTTAATACCCCTTCGAAAATTAACGTCCCAAAAAGAAGCAAATAGAAACCTTTATATAGGAAAAAAAGCAAAATATCGTCCT # Right flank : ATTTTAAGTTATTTGATTTTGGAACATCTTTAATTTTGTTAAAATCAGCCCTTAGGGATGGAAATTTTATTTTTACCTAAAAGAGGCATTGCTGAGCGAAGCGAAGCAATGCATCCCTTTGATGAAACTTTTTAAAAGTTTCTTTTAAAGGTTTCAATTAGAGCCATAGGGGGATGGAAACTACTTTCTTTCTATCGATGATTTCAAAAAAATAGACCATTAAAATCTCTATTTTGCTGAATCTATTGGTAAGGAAGTGAGTATTTTTAATCTCCATCTATGTTTTTAATTGTGACACATAAAAGAACTACCGAAAAATTTATATATTAGTTCTATATTTATTGATTGTGCTGACAACGTGCCTCGGTGGCTCAGCCTGGTAGAGCGCCTGACTTGTAATCAGGTGGTCGGGGGTTCAAATCCCCCCCGGGGCTCCACTTGTCCTTGCCCTTTTGAGGGCCTGTGGGGTAGCCTGGTCTATCCTTTGGGATTTGGGATCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCCTTAGGGGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 9 1045115-1045653 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================================================================================================================== ================== 1045115 31 100.0 35 ............................... TTAAACTCCATGTTCCATCATCATTTTCGGATAAA 1045181 31 100.0 38 ............................... CCAGATAGAGTTGAAGAAACTGTGGAAAGTATTGACTT 1045250 31 100.0 42 ............................... GCATAATTATCACTCGTTAAATACTCTATCATGTGAGTATAT 1045323 31 100.0 37 ............................... ATAATCTTATTTACGCCCTCGCTATCCACCAACCCCC 1045391 31 100.0 38 ............................... CCCAATATACTGCCTGAAGAGGGACTATTTTATAATTT 1045460 31 96.8 132 ..............................C GCTTCTTTTATCAATAATAAAAATAAAAAAAGATTAAAATCAGCCCTTAGGATGGAAATTTTATTTTTTAATAGAGGCACTACCGAGCGAAGCGAGGTAGTGCATCCCATTTTGATGAAACTTTTTTTAAAA 1045623 31 80.6 0 ...TC...T...G..A..............C | ========== ====== ====== ====== =============================== ==================================================================================================================================== ================== 7 31 96.8 54 GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Left flank : TCGATTGTTATGGTAAAATGGGATAATGGATATAGTTCAGACAGTAAAAACTTACTAAAAATGATAAAATCTTTAGATTTTGTGAAAGGTGCGATAATATTGTTGGATGGTGGTTACGATGATGAAGATTTACTTAGAGAGTTGTTATCTATAGACCTCATTCCAATAGTTAAAACAAAAGAGTTTAAATGGGATTACGGTATTTCTAAAATCAGAAAGAAAGTTAAAAAATTGTTTGATAAGAAACTGTATAAAATTAGAGGGGTAATAGAAGCGATATTTGGAGGGCTAAAAACTAAATTTAGATTAACTCTAAATGAAAAACTACCTGAAAGTAGATGTAGAGCTACTTTAGCAGTAGCAATCGTTCATAATATTTTAACACTAATGAGAGTTATTAGTATTAGAGAGTAATATTTAAATTCATTGATGAAATAATTTTTCGACAACCTCAAGCAAATAGAAAACTTTATATAGGAAAAGGAGCAAAATATTGTCCT # Right flank : CGGGCTATAAGTATAATGAATAATACAAAGATAATTCAGGATACGTAGATTGAAAAGTGAAAATATGAATGTTATAATTACAATAATTATAATTTCATTTTCAATATTATTAAGTGTTAAATTATATTCTTCTCTAATGAAGCGTCTAAAAAAAGAGGAAATAAAATTAAAAAATTTTGAAGTTATATATAAATTTGTAATTCCTATTATCTTTGCACTTGTAGGGGTAGAATACAGCAATAGTATTTTTATAAGTGCGGGTATTAACCCAAAATCATTTACTTTGTCTATTTTAGATACGATAGTAGTGATATTAATACTAATGATATATCATGTAAGTTTAGCTATAATCTCAAGAATTATAGTTAAAATCAGCCCTTAGGGATCACATTTAAAATATTTTTGTCCGAAACTATATTTTTGCCAGAGAACTTTTTTAATGATTTCAAAAATAGTATATGCAAAAAAGTTTTTTGGAGATACTATGGACATTCTCAAAA # Questionable array : NO Score: 4.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-1.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 10 1056814-1057683 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================================================================================================================================== ================== 1056814 31 100.0 41 ............................... TGTTATCACCTCCTTTTTGTTTTTTGAGTGGTTTGATAACA 1056886 31 100.0 37 ............................... TTTACATTTTAAGTTGCACTGTTTAAAATATATCACA 1056954 31 100.0 37 ............................... AACAACTTGCTGAGGAGTGTGGTGTTTCAACTGTTGC 1057022 31 100.0 43 ............................... TTTTGAAATCATCTATTATAGATGCATTAAGATCTTCAAAATA 1057096 31 100.0 37 ............................... AATAAGGCAAGTCTTGAATTAAACTCTCAATTAGAAA 1057164 31 96.8 37 ...............T............... AGATTCTGATTTTAAAAAAGGGAAAAAAGCATTCAAA 1057232 31 96.8 38 ...............T............... TATTTCTTCTGTATATCTCTTCTTAAATCCTCAATCTC 1057301 31 96.8 76 ...............T............... TTTATATTTATCTAAAAGAGGCATTGCTGAGCGAAGCGAAGCAATGCATCCCATTTTGATGAAACTTTTTTTAAAA 1057408 31 83.9 37 ...TC...T...G.................C ACCACTTGATAAATCATAAAATGGGCATTTCTTATAA 1057476 29 87.1 148 ...............T..--......A.... AGAAAAAAGAAGTTTTTTATCAAAATTAAGTGATTTGTTAAAATCAGCCCTTGGGATGGAAATTTTATTTTTACCTAAAAGAGGCACTGCCGAGCGTAGCGAGGCAGTGCATCCCTTTGATGAAACTTTTTAAAAGTTTCTTTTAAAG 1057653 31 83.9 0 ...TC...T...G.................C | ========== ====== ====== ====== =============================== ==================================================================================================================================================== ================== 11 31 95.0 53 GTTAAAATCAGACCCATAGGGGGATGGAAAT # Left flank : TGAAATAACTCATAAAACCTTAAAAATTTACTAATAACATATTTCCAATTTCTAACGCACACGACTATAATTTAATTTTCAATGTAGCATATTAGGTAAGTAAAGATTTATATGACAATGAATATCTACAACCTAACCTCCCTCGCTGAAAATTTTTATTTTTTAATTTAATTGATTTTTAGGAGTTATTTTTTAATTTTATGGATTTTTATCAAATTTCGAAGGGTGCTTTATTTTGAAAGATTTGCATATTTAAATTTAATGATTTATTGAGATTTTTGGATTTAAAAACCTAATAGATTATATTTCAAATTTTCCCCGATTAATAGGGTTTATTTAACAATTTAAAACGATTTTAAAAAATTACTTCGAATTTAAACGATTTTTAGGGAAGTGCAGAGGTATATAAATGAACAGTGTTAATACCCCTTCGAAAATTAACGTCCCAAAAAGAAGCAAATAGAAACCTTTATATAGGAAAAAGAGCAAAATATTGTCCT # Right flank : CACTTTTCTCAAATGGATACAATCCCCAACATCAACAATTTCCAATTTTTCATCCGTTTGCAATACAATACCCTCATAGGTAATATCAACAACATGACCAAAAATCTCTCTGTTTGGAGTTATTATTTTCACGTATTCATTTAACGTCAAAGAATTTTCCTTATATTCCTTCAAAATATTCTCTGGACTTAAATTGTTTAAATAACTCTCAAAAATCTCCAAAAATGTTTTTAAAATTTCCATCTTATCGAATTCCTTCCCTTCAACTTCTTTTAATGATGTTGCAATATCTCTAATCTCCTCCCTAATTTTATTATTCACATTAATTCCAATCCCAAGAACCATAAAACCATATTCCACATTAATCTCACTCAAAATTCCACAGATTTTTTTATTATTGACTATTATATCATTAGGCCATTTTATACCATAGTTTTTATTTGAGTAGTTTTTTAAGGTTTTAACCATGCAGATTGGTGCCAAAAAATTCAATACTGGGA # Questionable array : NO Score: 4.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-1.41, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCCATAGGGGGATGGAAAT # Alternate repeat : GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 11 1182648-1182101 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 1182647 29 96.6 44 .....A....................... TTCAAACCAGATATAATTGTTATTGGAGTATGCCCGGTCAAAAT A [1182620] 1182573 29 96.6 43 ...........................C. ATTCAAACTGTTGGTTTTACAAAGGGACAGGCTGAGGTTATTA 1182501 29 100.0 45 ............................. ATTCAAACACTATAGAAGAATAACACATAGAAGATTTAGACCACG 1182427 29 100.0 41 ............................. ATTCAAACTTGAACATGATTACAAAACAATAATAATAGAAA 1182357 29 100.0 41 ............................. ATTCAAACGTTGCCACTAAATACTCAACATCATGCCAACCG 1182287 29 100.0 51 ............................. ATTCAAACTTAGAAGGTATGTTTTAGTTGATGATGAAGATGTTATTGTAAT C [1182265] 1182207 29 100.0 48 ............................. ATTCAAACTTTCTTGTAGTAACTTCATAAACTCTTTATTTTGCTTAGT C [1182185] 1182130 29 100.0 0 ............................. | C [1182108] ========== ====== ====== ====== ============================= =================================================== ================== 8 29 99.2 45 GTTTCCATCCTTGTTTTAATGGATGAGTA # Left flank : GGTCAATGGGGGCTTTAAGAGCATCTGAGTTAGATGTCCATGGGATGATTGGAGTAGGGAAAGTTTATAAACTTTACAAAGAAGGGGTTATTGTTGATGATGATGAGGTTGCAGTTACGTTTGATGATAACTTTAACCAAATATCTTTCTCTCTTGTAAGCTTTAGGTTTATGGTGAAAAATGCTGTTGAAAAAGGACTAATCAGCAAAGAAGAAGGAGATTTATTAATAAAAATAGCAAAGTCCCTATACTATCCATTAAGAACATTTAAAAACGTTCTTGATAGGACAGATTTTAGTGGAGAGAAAAAAGAAAAACTATTAGAATTTTTTAAAAATGAGGAAGATATAAAAAGGAAAGATGCCTTTGAGATGCTGTATAGGATAAGAGATTTCATAGAAAAAAAGTAAATTTATTACTTTTTCATCTTAATTATTATTTATTAATTTAAATTAATGGATTTTGGGTTGTAAAATTTTAGTGTGTTGAATCCTTATTTT # Right flank : TTCAAACCCTTAACTTCTGTCCTTATTTTATGCCCGAACTCCTATATAAATGTTTCTTTTTTTAGGAGGTTGTCGAAAAATACGAATACTATAAATAATAGTAATAATAATTATGAGCGGCAGAAAAACCAAAAGAAAAGGATACTGGAAAGCCTACGATAAGAGGTTTAAGATATTCAATATTAAGTACACTTATGATTTTGTTTCATTTATTATAAATATTTTACTTCCATATAAAGAAAAACGCAAAGTAGGAAGGCCTTTAGCTATAAGTTACAATGAATATATAGCTACTCTAATAATAAAACACATTTTTAGAATTAGTTTAAGAGATTTAGAAACTCTTTCCGATTATTTACATAAAAAGCATATAGATAGCTCCACATACGGAAAAGCTTTTCAGAGGATTAAAATAAGCGATTTAACTAAAATAATCGTTGGATTACACTTAATTATTGCTAATTCGTTAAAATCATCGGTTATAATTTACATAGCTGATT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATGAGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 12 1260642-1260296 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 1260641 37 81.1 38 T...................A...T..GTG...G... TTTCGAGTTTTCGAGTGCAGTATTTTCTATCCTTGTTT 1260566 37 91.9 36 ........................G..GT........ AACCATCGCCTATTAAATCCACTATATATCTACTCA 1260493 37 100.0 49 ..................................... TAGAGAATTAAGAGGTATTGGATTCTTGACAGAAGGTATGTCAATAGAA 1260407 37 100.0 38 ..................................... AATATATTGGATAGTAGCTGGTTCGGAAGCCAAGATTT 1260332 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================= ================== 5 37 94.6 40 GTTTCCATCCTTGTTTTAATGGATAAGCAATTCAAAC # Left flank : ATTGTATTGGATATTAAAAAATTAGAGTTAAACCATAAGGTTTACACTGTTACTGGTGGATATGTAAAGGTTGTATTTGAGGAATTTGGGGTTTCTGATGAGATGAAAAGATACAAGTTTATCTCCCCATGGGTGGCATTAAATGAAAAGAATTATCTGAAATATAAAGAGTTGGATGAAGACGGGAGAAAAAATTTACTTGAAAAAATCTTAATTGGAAATGTATTATCTATGAGTAAGTATTTAGATTATACTGTTGAAGAGAAGTTAATTGTGGAAATTTTGGATGTTGAAAGTTTAATTGTTAGGTATAAGGGAAACAAGTTCATTGGTTTTAAAGGAGAATTTGAAATTAACTTCGATATCCCAAATTACTTAGGAATTGGGAGAAAAGTTTCCAAAGGATTTGGAAGTGTAGTTAAAGTTAAATAGTAAAACTATACATTTTTCCAAATCTTTATTTAAAAATAAAATATCTTTGTGCTTTTTTTATATATTTC # Right flank : CCTATAACTTTGTCCTTATTTTATGCCCAAACTCCTATATAAATCTTTCTTTTTCAACCCGAATTTTCTTACTGCATGATTATCAAACCCTTTATAAAAGTAAGAAAGATTGTGCAGGTTCTTTTTAAATTTATTGCACAACCACGCCAATAAATCTCAATAATTAGCAGAGATATTACACAATCCAAAACCAATCCAAACTTAAAACATACAAAATAAAACCAAAAAACTAAAATAATTAAAAAATCTCAATTTTAATTTGAAAAAATTAGTAATACTTTTTCCCAATTTTCTAGTACCAAAATTCAACAGGGGGTATATAAAAGCAAGAAAAGTTAATTAGGTATTTTAATATCGGATATTAAATTCCCTAAGAGGCACTGCCGAGCGAAGCGAGGCGGTGCATCCCCATTTTGATGAAACTTTTCTAAAGTTTCATTTAGAGGTTTCTTTTATTATTTTAATGTATATTTCTTAAGACATTTGCAGCCTGCCTACAC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCAATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 13 1262795-1262543 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1262794 37 83.8 33 A...A..................CAG.G......... TCGTAGCAAACCCCACAACTTCTGCAATAATTA T [1262789] 1262723 37 100.0 36 ..................................... AATACAACTCAATATCCCAACCACCTGAGCTTTGGC 1262650 37 100.0 34 ..................................... GTAATGTGATTGTTGTTTCAGAAACAAATTATTT 1262579 37 97.3 0 ........................A............ | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 95.3 35 GTTTCCATCCTTGTTTTAATGGATGAGTAATTCAAAC # Left flank : GATTTAATTTTAATTAAAGGGAATCATGACACTTTTATCTCAAAGGTTGCTGAGGAATTGGGCATAGAGATATATGAGCATTATAAAATAAAGAACTATACAATAACACACGGACACGCCAATTTTAAAGAAGATGAGAGCTTTTTAATCTTAGGACATGAACACCCTTCCATAAAGTTGAGGGATGAGGTCGGGGCTATTTTAAAACTCCCTTGCTATTTATACAACAAAAGGTATATTGTCCTTCCTGCATTCAATCCCCTATCTCCCGGCAATGATTTGGTTAACAACTATGCCTCTTCCCCATGCATAAAGAAGGATTATTTAGACAGTGAAGTTTATGCAATAACTGAACTTGGTTTATTAAATTTTGGAACGTTGAGGGATTTGAGAGAGTTTGTAAAAGTTAATTTGTAGATTTTTATTTTTTGGTTTTATTAATTTATTTATTTAAATATATGGATTTTATAAATTAAATTCTAAAAATCTTGTTATTTTTA # Right flank : CCTATAACTTCATCCTTATTTTATACCCAAACTCCTATATAAATCTTTCTTTTTGTAACTGAATTTTCTTACTGCATAATTATTGAAACCTTTATAAGAGTAAGAAAGATTGTGCAAATTATTTATAAATCCAATGCACAACCACTCCAATAAATCTCAATAATTAGCAGAGATTTTACACAATCCAAAACCAACTCAAACTTAAAACATACAAAATAAAACCAAAAAACTAAAATAATTAAAAAATCTCAATTTTAATTTGAAAAAATCAGTAATACTTTTTTCCAATTTTCTAGTACCAAAATTCAACAGGGGGTATATAAAAGCAAGATTATCTTATTGTCCTAAATACCATAAAATCATCAAAAAAGATTTATAAGGCTTTAAAAGAGATGGGTTTAGAGGAAGATTTTTATTATTTATCAACAAGTATATATCCAAAAGAAAGATTGAAAAGAATTGAAAGCATCAATAAAAATAAAAATAGAAAAATTATTGTT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATGAGTAATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 14 1280412-1280888 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1280412 37 94.6 35 ...........................GT........ TTGCTGGGTTTGGGATGTTAATTTATTTGGTAAAA 1280484 37 100.0 36 ..................................... TTGGCGGAGGACAAGGAACGCTTAAAATCATGGATT 1280557 37 100.0 38 ..................................... CCCTTTTTTCCTCGGTATCCAATAACACAGCCATTTTG 1280632 37 100.0 35 ..................................... TGTTGAAAATATTAAATCACAAATATCCGTTTTAT 1280704 37 100.0 37 ..................................... TAACATAATCAATATATTATATTCACATTATCCCACA 1280778 37 100.0 37 ..................................... AAAACATTAGTCAATCTGATATTCAATTTATATATCA 1280852 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 99.2 36 GTTTCCATCCTTGTTTTAATGGATGAGTAATTCAAAC # Left flank : ATTGAAGGCGTTGAGTTTGGAACAATGCATGATTTAGTTGCGTTTGTTAAGGAAAGTGATAAGGTAATTACGTTCTAATTAAATATAATACAAGTTATAACTTTAAATTCAACCTTAAATTTTTAATTTTAAGCAAGTTTGTAGTTGGGAATTTTTAAACTTATTTTTAGTTTTTATCTTTTACCCTCTCTTAAAATTGAAATATTAAATTTAACGCACAACTATAAACTTAATGTGTAAAATAGACTTTTTCTAAACGCTCATGTTCATTCAAGATTACCTATATAAATAGTGTGCTGTTATCGTGGCTTTGTAGGCAGGATATATTAAAAATTATCAATGGTAGAACTTGTTATCTATAGGTAATGATACTTGAAGATGAGCGTTTCTAAAATTTTAAAAGATGATGTTTTATTCTCTTAACTCCAATTCCTATCATACATTTGAATATTTATGGATGCAAATTTTTTAATGATGTAGTTTTTTAATAATAAAATCAT # Right flank : CCCTATAACTTCATCCTTATTTTATACCTAAACTCCTATATAAATCTTTCTTTTTCAACCCTATTTTTCTTACTGCCCAATTATTGAAACCTTTATAAAAGTAAGAAAGATTGTGCAAATTATTTATAAATCCAACGCACAACCACACCAATAAATCTCAATAATTAGCAGAGATATTATACAATCCAAAACCAATCCAAACTTAAAACTACAAAAATAAAAACAACCAACAAAAATCTTCCAAAAATCTCAATTTTAATTTGAAAAAATGAGTAATACTTTTTCCCAATTTTCTAGTACCAAAATTCAACAACCCCTTTATAAAAGCAAGAAAGATTAATTAGAAAATTTAATATATGATATTAAATTCCTTAAGAGGCATTGCTGAGCGAAGCGAAGCAATGCATCCCATTTTGATGAAACTTTTCTAAAGTTTCAGGTCAGTGCATCCGATTTGGATGAAACCTTTTTTAAAGTTTCATTTAGAGGTTTCTTTTGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATGAGTAATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 15 1288480-1289499 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================== ================== 1288480 31 100.0 46 ............................... CCAGCAAAGTGGCATTGGCATAAGTTAATAGTATTAAGTTAAAATC 1288557 31 100.0 37 ............................... TTAATATGAAAGCATACAACAACACTATCCTTGTTGC 1288625 31 100.0 44 ............................... TTGTTTCCATAGGTCCATACCAATGATGGTCTAAAAATGTTTAG 1288700 31 100.0 36 ............................... AAATCACACACACAACACAGTAATACTTCTGTGTGT 1288767 31 100.0 41 ............................... TTCGTTGAAAAAATACTTGAAAAAATTAAAGAACATGCTCC 1288839 31 100.0 37 ............................... ACTGCCACACCATTATTAAACAAATTACTTGAACATT 1288907 31 100.0 38 ............................... CATATATTAAGAGCCACGCATGCAACTAATTTAATCAA 1288976 31 96.8 41 ...............A............... TAAGTTATTTAATTGGTTTATTTGAACCTGTAAAAGTTAAT 1289048 31 96.8 37 ...............A............... TCATAAATAATTTTTGGTGAAGTAACTATAAAATCTA 1289116 31 96.8 36 ...............A............... TCTAAATCCTTTTTTGTTATAAAATATTTAAACATA 1289183 31 96.8 46 ...............A............... TGCTGTGCCTTATTAACTGCCAATGCAGTGGTAATCAATGTCTTTC 1289260 31 96.8 38 ...............A............... AATTAAAACCCCTCCCATCCCAGAAGACAGACAATTGA 1289329 31 96.8 38 ...............A............... TTTCGTTTAGAAATTCAGTTTTTAGAAAATAAAGTAAA 1289398 31 93.5 40 A.............................G CGGCTCTTTTAATGCTTTCCATAGGTATTTAGTTAAGTAG 1289469 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ============================================== ================== 15 31 98.3 40 GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Left flank : ATAAATGGACTCCAGTGGAATCAGCTATGTAAATTATAACCGATGATTTTAACGAATTAGCAATAATTAAGTGTAATCCAACGATTATTTTAGTTAAATCGCTTATTTTAATCCTCTGAAAAGCTTTTCCGTATGTGGAGCTATCTATATGCTTTTTATGTAAATAATCGGAAAGAGTTTCTAAATCTCTTAAACTAATTCTAAAAATGTGTTTTATTATTAGAGTAGCTATATATTCATTGTAACTTATAGCTAAAGGCCTTCCTACTTTGCGTTTTTCTTTATATGGAAGTAAAATATTTATAATAAATGAAACAAAATCATAAGTGTACTTAATATTGAATATCTTAAACCTCTTATCGTAGGCTTTCCAGTATCCTTTTCTTTTGGTTTTTCTGCCGCTCATAATTATTATTACTATTATTTATAGTATTCGTATTTTTCGACAACCTCAAGCAAATAGAAAACTTTATATAGGAAAAAGAGCAAAATATTGTCCT # Right flank : TAGAAAAAAGAAGTTTTTTATCAAAATTAAGTGATTTGTTAAAATCAACCCTTAGGGATGGAAATTTTATTTTTATCTAAAAAAGGCTCTAAAGGAAGTGGAAATAAAAGTATATGTATGATAAAAACAAAAAAACGCTCATGTTCACTCAGGATTGTCCATATAAAGGCTTTACCTTGCATATAAAAAATTATCAATGGTAAAACTTGTTATCTATAGGTAATGATGTTTGCGGATGAGCGAAAATAAAAATGTGATTATTTCCAATGCTCCAATGCCACTTTTAATTCTTTAACCTCTTCTGCCTTCTCTTCTAATGATTTTCCTTCCATAACTGCATCTATCGCTGCCCTCATAGCTATTGCTCCTTTAACAGTTCCTTCTGGATGCCCGTGAATTCCACCACCTGCCTGGATAATAACATCTTTTCCAAGAATTTCAATGATTTCTGGAACTAACTTAGGATAAACTCCCCCAGAAGCTACTGGGAAAACATTATT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Alternate repeat : GTTAAAATCAGACCCATAGGGGGATGGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 16 1346391-1346824 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 1346391 31 100.0 35 ............................... ATTGTAAATTGGTTCAAAGATTATGGCATTGATGT 1346457 31 100.0 37 ............................... TTTCACACTTGTTTATTATGAAATCCATACAAATCTT 1346525 31 100.0 37 ............................... TAGTCGTAACATCTTCTTATAGTTTTATCGTTAAATA 1346593 31 100.0 40 ............................... CAATTTTCCGTCAGATTAAAATTTTGAAATCATTATATCC 1346664 31 100.0 37 ............................... ATCCCACAGCGGTCTGATTTTAAAAAGTAAATTAACA 1346732 30 96.8 32 ......................-........ TTCTGTGAAATTGAAACCGAAATACCATGGCA 1346794 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 7 31 99.5 36 GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Left flank : AAACATGCACAACAAAAACCAAAAACCCAAACCAAAATTAATTCCAATTTTAACAATCTCTAAAGTTATAATATATATAAGTTATATTTAAGTTTGTTGGTCAAATGCATCTTTAATTATGGAATAAATGTAAAAACGTATCTCGCTAAAAATTTTTATTTTTTAGTTTACTAAATTTTCAGGCAATATTTTTTAATTTTAAGGATTTTTATCAAATTTCGGAGGGTGCTTTATTTTGAAAGATTTGCATATTTAAATTTAAGGATTTATTGAGATTTTTGGATTTTAAGGAATAATAGGAATTATTTCAAATTTTCCCCGATTGATAGGGTTTATTTAACGATTTAAATAGATTTTAAAAAATTATTTCGAATTTAAACGATTTTTAGGGAAGTGCAGAGGTATATAAATGAACACTGTTAATACCCCTTTGAAAATTAACGTCCCAAAAAGAAGCAAATAGAAACCTTTATATAGGAAAAAGAGCAAAATATTGTCCT # Right flank : TAGCGATAAAATCAATATCAAAAATAAAACAAAATCAAGTTAAAATCAACCCTTAGGGGTGGAAATTTTATATTTATCTAAAAGAGGCATTGCTGAGCGAAGCGAAGCAATGCATCCCTTTTGATGAAACTTTTTTTAAAAGTTTCAATTAGAGCCTTAGGGGGATGAAGGGTTGCATACTTCTTAATTAGTTCTATGATTGCATCACTTCCGTTAAAATCACCCTTAGGATGGAAATTTTTCTATTAATTTTTTAAGATTTTTTGATTTTTATGTTAAAATCAGCCATGAATTTTTTCAAAATATAAATTTATATATTTAAATTAACAAATTAATGAATGACAAAAACACACATATACACCAACAACATAATTTCTAAACATCATGCTCATCATTAATAGTCATGGGGATGATTATGGTTCATGTCGCATGCTCTGAAAAAATGAAAAAATACTTTGATGATATTGTAAATGAAGTCAAGAGAATTTACAAAATAGCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 17 1352425-1353343 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================================================================================================================================================================ ================== 1352425 31 100.0 35 ............................... ATTGTAAATTGGTTCAAAGATTATGGCATTGATGT 1352491 31 100.0 37 ............................... TTTCACACTTGTTTATTATGAAATCCATACAAATCTT 1352559 31 100.0 37 ............................... TAGTCGTAACATCTTCTTATAGTTTTATCGTTAAATA 1352627 31 100.0 40 ............................... CAATTTTCCGTCAGATTAAAATTTTGAAATCATTATATCC 1352698 31 100.0 41 ............................... TAAATCCCCATCATCATCAATCCAATATGGTAAGCGTTGTC 1352770 31 100.0 41 ............................... TAAATCCCCATCATCATCAATCCAATATGGTAAGCGTTGTC 1352842 31 100.0 37 ............................... ACATTATATTAACACTTTGCGCTTGCCAGATAAAATT 1352910 31 100.0 192 ............................... GTTTTTAAAGAAAAAAAAGTTTAAAGTTTAAAGGGGAATTAATATTCGTTAAAATCAGCCCTTGGGATGGAAATTTTATTTTTACCTAAAAGAGGCACTGCCGAGCGTAGCGAGGCAGTGCATCCCTTTTGATGAAATCGAACCGTAAGGTTCGAGCTGCAAAACCGACAGGTTTTGCTTAACTTTTCTAAA 1353133 31 83.9 150 ...TC...T...G..A............... GAAAGTATTTAATTGAATATTAAAGTTAAAATCAGGCCATTGTGGGAATTATTTTCAAAAAAAATTTAATCAAACCAAAAATCAAAATATTTAAATATATAAATACCAATTAAAAAAATAAAAAATTATTGAGAAATGCAAAAGCAACAA 1353314 30 77.4 0 ........A.A.T.A..-.TT.......... | ========== ====== ====== ====== =============================== ================================================================================================================================================================================================ ================== 10 31 96.1 68 GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Left flank : TCCCAGAAAATGGCAGAGAAATATAACGCAAATGACTACATAAAACAAAGATTGATGTTAATTAAGGAAGGTATTGACTCATTGTTTGAAAATGAGAAGAATAAGCAAGTTAAGTTAAGTGATTTCTTCAGGTAATCTTCCCTCGCTGAAAATTTTTATTTTTTAGTTTACTAAATTTTCAGGCAATATTTTTTAATTTTAAGGATTTTTATCAAATTTCGGAGGGTGCTTTATTTTGAAAGATTTGCATATTTAAATTTAAGGATTTATTGAGATTTTTGGATTTTAAGGAATAATAGGAATTATTTCAAATTTTCCCCGATTGATAGGGTTTATTTAACGATTTAAATAGATTTTAAAAAATTATTTCGAATTTAAACGATTTTTAGGGAAGTGCAGAGGTATATAAATGAACACTGTTAATACCCCTTTGAAAATTAACGTCCCAAAAAGAAGCAAATAGAAACCTTTATATAGGAAAAAGAGCAAAATATTGTCCT # Right flank : TATTCTCCATGATTTTTTCGATTTTTTTAAGAATTTCTGATGCTTTTCTTTGAACAGTTTCCACATTAGGTCTCTCTTTTTTCATTCCAGCGTGGGCAATTGTATTTCTCATCTCTCTGACTTCATCCCATAACTTTCCGAGGTCATCCATAACTTCATTTTCCTTAACCGATGGCAAATACTTTGTTTCTTTAAGTTCTTTGTTTTGTTTCTTGTTTTTAGAACTTGGGGCAAACCACTCCAAAGTTTTTTCTGCTTCGTTTCTAACTTCTCTCTTCAACCACTCATCTTCACCGACAAGTAATATAACTGCATTAACTATCCATTCTCTCATCAGTTCAAAGGCATTTGCCACCATACCTTTTTCCAAGAGATATCTAATTATTTCAACCTGTACTTCAAGGCATTCCTTCCCAAATTTTTTACAGCTAAAAGACGTTAATCGCTCAATTTCACTAAGGTGTGTTTAATAGGGGGTATATATTCTGTCACTTCGCTTT # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 18 1469792-1469349 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 1469791 34 100.0 35 .................................. ATCCAAAGGTCGATTCCAGATTCATTATTGTTATT 1469722 34 88.2 32 ....A......C.......A.A............ CTGTCAAGGTGGATTCCCTCTATATTGTTATT TTA [1469693] 1469653 34 94.1 35 ....A......C...................... CTGTAAAGTAGAATTCCATACTCATTATTATCGGA 1469584 34 97.1 35 ....T............................. ATCCAAAGGTTGATTCCATACCAATCATTATTTGA 1469515 34 100.0 32 .................................. CTGCCAAGGTAGATTCCATCCTCATTGCTATC 1469449 34 94.1 32 .A..T............................. CTGTCAAGGCAGATTCCTCTCCAAAACTCCTT 1469383 34 70.6 0 .A..G...G...CT........AC....T...TC | C [1469354] ========== ====== ====== ====== ================================== =================================== ================== 7 34 92.0 34 AGCACTTACATTTGTTATTGTGTTATTTGATGAA # Left flank : TTTAATGATAATCTTTCGGTTTTTACTGGATTGTTGTTTATGTAGATTGTTGTATTAAATTCTCCACTATTTGAGTTTCCGTTGTTTGTTACTGTTAATGTTATTTCGAAGGTTGTGGCATTTTCTGTTTCATTTATGATTTTATAATTTAGGTTTCCTAATAAGTCGATGTATGTGGTTGTTGTTTCATTTCCAATGATGTAGTTCTTTACTGGGTTTATTAGTGGGTATTGGTCATATACTCCATCGGCTATTGTGTATGGAGTATCTCCAATTCCATCTCCATTTGAGTCAGTTCCACTGTAATCTGAATAGTAGTTTCCTAAGTAGTTTGTGTATTGATTTCCGTTGTAAGTGTAGGTTATTGGTGTTGGTGAGTGGAAGGTGTTGTTTGATGAATCCCTAATCATAATGCTATTTTTGTTATTTATTAAGTTGTTGAGGTATATTATGTTGTTATTTGATGAATTGTCGAGGTAGATTCCCACTTCATTGTTTGA # Right flank : CATTCACAATGATTCCATTATATTTACCAACTCCATCCAAAACCTTTCCGTTCCCATCTAAAACAACATTATCTGCATCTATGGTTATAGCAGTTCCAGAGAGATTTTCACAGGAAGTATTTAACACATAGTAGCCACTTTCATTTATGGTGTATGGTAGAGAGTTTATGTATTTAACTTCATGGGTTTCATGGGTTGTATTTCCAATAATGTAGTTCTCTACTGGTTTTATTAATGGATAGGAGTCGTTTATTCCGTTATTTGTGTATGGAGTATCTCCAATTCCATCTCCATCTGAATCATTTCCGTTGTAATCTGAATAGTAGTTTCCTAAGTAGTTTGTGTATTGATTTCCGTTGTAAGTGTAGGTTATTGGTTTTGGAGAGTGGAAGGTGTTGTTTGATGATGAACCCCAAAGTCCAATATTTTCACTGTTGTTTATTAAGTTGTTGAAGTAGATTATGTTATTTGATGAATTGTAAAGGTGGATTCCATCCCAA # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCACTTACATTTGTTATTGTGTTATTTGATGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 19 1492728-1491593 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================== ================== 1492727 31 100.0 37 ............................... CTGAGAATTTCAAAATTTCAGACGGTAATCTGTACGA 1492659 31 100.0 38 ............................... GCTTTTTTAGCATACTCATCGGAATCATCAAATAATAC 1492590 31 100.0 36 ............................... TGTAGAGTTTTGAAATATGGGTATTTTCTGGCTATA 1492523 31 100.0 34 ............................... CACTCTTCTGCAAGTTGTTTGGTTGTAACAAATT 1492458 31 100.0 41 ............................... CTTTTAACGAATATGTTAGACAGCGGATTAGGAGGAGTTAT 1492386 31 100.0 36 ............................... TATTGAGAGATTTGTTTAACTGCTTATTTTCAAATT 1492319 31 100.0 36 ............................... ATAATCTTTTTTTAAGTGTGGCACATAATAAATGAG 1492252 31 100.0 37 ............................... AAGTTACTGGAAATTCTTGAGTTACTTGCAAAGTTAC 1492184 31 100.0 37 ............................... ATTTTTAGCAGTATTTGGACTTATGCGTTTGGAAAGT 1492116 31 100.0 37 ............................... TAAGTTTATTGTTTAGTGGGTTTGGCTCTTCATTGTC 1492048 31 100.0 43 ............................... CCTTCTCAACAACTATAACAACCCTTTTAGCATCATTCATGTA 1491974 31 100.0 35 ............................... AATGCTTTAACTGTTAATCCATCATCGCATTCACA 1491908 31 100.0 36 ............................... TGATATTTTACTTCTTAAGTGCATTGCTGAACTTGA 1491841 31 100.0 41 ............................... TTATGAAGAAAGAAACTCTACGATTTTCTTAACATCATCCT 1491769 31 100.0 38 ............................... CTCAAGCATTGCTGTTATGTTTGCTCCGATTCTGTTTA 1491700 31 96.8 46 ...............A............... TCGGGTCTTGTTGTTGCTGTCCACCTTGTTGTTGTGGTGCTACAAC 1491623 31 93.5 0 ...............A..............T | ========== ====== ====== ====== =============================== ============================================== ================== 17 31 99.4 38 GTTAAAATCAGACCCTTAGGGGGATGGAAAC # Left flank : CCAAATAAAGGTTATTATCCCCTATAATTTAATGAGGATTTAGTGCATTTGTAAGGCGAACAACTATAGTTTTCTTAGCTCTGGATTCCAAGATTTGGATTTTAGTATTATAAAATTCATGAAAAGTATTACTACCATTCCCTCGCTAAAAATTTTTATTTTTTGATTTAATTGATTTTTAGGGGTTATTTTTTAATTTTAAGGATTTTTATCAAATTTCGGAGGGTGCTTTATTTTGAATAATCCAAATCTTTAATTTTATGGATTTATTGAGATTTTTTGATTTTAAGGAATAATAGGAATTATTTCAAATTTTCCCCGATTGATAGAGTTTATTTAACGATTTAAATAGATTTTAAAAAATTATTTCGAATTTAAACGATTTTTAGGGAAGTGCAGAGGTATATAAATGAACACTGTTAATACCCCTTTGAAAATTAAGGTTTCGAAAAGAAGCAAATAGAAACCTTTATATAGGAAAAAGAGCAAAATATTGTCCT # Right flank : AGCGATAAAATCAATATCAAAAATAAAACAAAATCAAGTTAAAATCACCCTTAGGATGGAAATTTTATTTTTACCTAAAAGAGGCACTGCCGAGCGTAGCGAGGCAGTGCATCCGATTTGGATGAAACCTTTTTTAAAGGTTTCATTTAAATTTACAAATAAACTATTGAAAAAAATAAAAAATTAAGAAAAGTCATTACCTACCCCAGAATGGGTTGTTTTCTAATTTTTGCTTTAATTCCATGTATCTGTAAAGTGCCTCCTGCTCATCTCCCCTAAGTTCATTTATGTAGTCGTGGTAGAGTTTTCTAACCTCGTTTTCTGAAATTTCAACATACATAAGGTCGTTCTCTTTTATATGTCTTCCAAGGACAACATTTCCATCTATAGCAATGGAAACTTGCTCTCCAACTTTTGCCTCTTTAACACTTTCACCTTTATTCTGAATCTCTTTCACAATACCCAACCTTCTACCATCTTCCCTCATAAGTGGAACCCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCCTTAGGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 20 1515805-1515265 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================================================================================================================================================================================== ================== 1515804 32 100.0 35 ................................ AATTTGCATGCGAACCTTAAGGCTCTTATCATTCG 1515737 32 100.0 43 ................................ GATTGCGAATAATCAAAATAATTAGAGAATACATGATACCTTT 1515662 32 100.0 32 ................................ TGGTATGTAGATGTTAAAGGTATATTATATCC 1515598 32 96.9 38 A............................... TTTTAAAACCAAATATCCATAACATTTTTTATTAACCA 1515528 32 96.9 200 ................A............... AAGAATTTTTCATAATAATAACTTTCTTCACCACCATGTTAAAATCAGCCCTTAAGGATGAAAATAGAAAAAAGAAGTTTTTTATCAAAATTAAGTTATTTGTTAAAATCACCCTTAGGATGGAAATTTTATTTTTATCTAAAAGAGGCATTGCTGAGCGAAGCGAAGCAATGCATCCCATTTTGACGAAACTTTTCTAA 1515296 32 75.0 0 A...TC...T...G..A.....A........C | ========== ====== ====== ====== ================================ ======================================================================================================================================================================================================== ================== 6 32 94.8 70 TGTTAAAATCAGACCCTTAGGGGGATGGAAAT # Left flank : AATAAATGGACTCCAGTGGAATCAGCTATGTAAATTATAACCGATGATTTTAACGAATTAGCAATAATTAAGTGTAATCCAACGATTATTTTAGTTAAATCGCTTATTTTAATCCTCTGAAAAGCTTTTCCGTATGTGGAGCTATCTATATGCTTTTTATGTAAATAATCGGAAAGAGTTTCTAAATCTCTTAAACTAATTCTAAAAATGTGTTTTATTATTAGAGTAGCTATATATTCATTGTAACTTATAGCTAAAGGCCTTCCTACTTTGCGTTTTTCTTTATATGGAAGTAAAATATTTATAATAAATGAAACAAAATCATAAGTGTACTTAATATTGAATATCTTAAACCTCTTATCGTAGGCTTTCCAGTATCCTTTTCTTTTGGTTTTTCTGCCGCTCATAATTATTATTACTATTATTTATAGTATTCGTATTTTTCGACAACCTCAAGCAAATAGAAAACTTTATATAGGAAAAGGAGCAAAATATTGTCC # Right flank : TAATAACACAAACGCAATATATTTTATTTTTCACAGATAGTGTAATCAACAAAAACAGGCGTGTTCTTTCCCTTAACCTTCATCTCTCCATTTTCAATGACTATTACATCACCATCCTCAACGTCTCCCTTAACCTCTATCTCATTAAACATTTTTGGATTTGGGCAAATTTTGTCTATTGCTATGTATTTGTCATATAGAACAAGTTTTCCGTTTTTTATTACTCCAATCTCTCCATTTTTTACAATCTTATTCACTATAGTCATGACTTTACCAAAATCAATCATCTTTTTTCTTAAGGTTTCTCTGTATTCAAATAATGCATCTAAATCTTTCTTTACGACCTCCTCTAAATTTTTGCATTCTTTTGTTGTGTATATAATATCATATCCCTTACTCACTGAAGGAGTATTGCATTTTTTGAAGATATTTTCAATTAAATCCCTAATTTCTTCCAAACTCATCATAGTTAATCTATATCCAGCTTTTCTAAATTCCTC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTAAAATCAGACCCTTAGGGGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 21 1683471-1683952 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1683471 37 89.2 36 .......G..A................TA........ TTTTAGAAGCAATTGAAAATGAAATTATAAAATTAC 1683544 37 100.0 37 ..................................... TGAAAAAAGCGAAAAAGATTAAGAAACAAAATCCCGA 1683618 37 100.0 36 ..................................... GGAGTATGTGGCTCTGCTTTTAGAACCGCATGAGTG 1683691 37 91.9 36 ........................A..CA........ GGTGTGTATTAGGATGTCAATAGATCCAGAGATTAT 1683764 37 97.3 34 ..........................A.......... GACTCTTCTACATGGGTTCTGATCCAGAGATTAT 1683835 37 97.3 44 ..........................A.......... TATGGGTGGGTGACCCGATCCACCCACTATTTCTTAATTTCTAA 1683916 37 91.9 0 ........................A..CA........ | ========== ====== ====== ====== ===================================== ============================================ ================== 7 37 95.4 37 GTTTCCATCCTTGTTTTAATGGATGAGGTATTCAAAC # Left flank : ACCGATATAAGGAATTTTATTGTTTCACAAGGCTCTATAACATTAGCTAATGAAGTATTTTCAATCTTTGCATTATTTTTAATTGGGACTGGTAGAAGTGGCGTGGCAAAGGCGATAAAAAATTTAAACATTGATGTTGATCTATTCCAATTAATACCGTCTATAATTATTGCATCATCGATTTCATTTGTTGTTTTGTTGTATTTATCAAAATTTATCCTTTTAAAAATGCAGAAGATAAATTTCAAAAAGATTTCAATATTTTTTATTTTTTTCTGCACTTTTGTAGTTGTTATTTCATCCATCAACAACCATCTATTTTATCATTTGACTATTTATTTGACAGCAATCTCAATCGGCATTTTATGTTTAAAAACAAAAACTCCATTTTCCTACATGATGAGCGTTTTAATATTCCCAACTATACTTTATTTTTTGTCTTCATAATTAATAACAATTTTTCATTGCTTTTAGTTCTTCAACCAAATGCATCATTTAAT # Right flank : CCCTATAACTTCATCCTTATTTTATGCCCAAACTCCTATATAAATCTTTCTTTTTCAACCCGAATTTTCTTACTGTATGATTATCAAACCCTTTATAAGAGTAAGAAAGATTGTGCAAATTATTTATAAATCCAATGCACAACCACTCCAATAAATCTCAATGATTAGAAGAGATTAGGACTTTCGCAAATACATTTAAATACTTAGATTAACAATAAACCAGCTTCTTTACATAAAGAGATTATAGCATTCCCAACGGCTATTCGGTTTAGTTCTCTTCTAAACTCATACCAAGTAATCTTTTTATCAATTCTAATCCTCTCTAAAATAAAAAAAGCTCTCATGGCTAACGAGATGTGTCCTAATACTGGAAGTCTCTTTCTAACGAAGAAATTTCCGATATTGCAGCACTGTTTAACCCCTCTGTGGAATTCTTCGATTCTCCAAGAGGCGTTTCTGACCTCTTGGAATTCTTCGAAATCCATAAATAGGTTATTCGT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATGAGGTATTCAAAC # Alternate repeat : GTTTCCATCCTTGTTTTAATGGATGAAGTATTCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 22 1769306-1769900 **** Predicted by CRISPRDetect 2.4 *** >NC_015562.1 Methanotorris igneus Kol 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================ ================== 1769306 31 100.0 40 ............................... ATTACAATTTTACCCACATTATGTTCAATACACCAATTAA 1769377 31 100.0 37 ............................... TCTAAATCATCGATGTTGTTTATGTGATATGTTTTTA 1769445 31 100.0 38 ............................... TCTCTACTCAAACCTGCTATTATATATACTTTTGAAAA 1769514 31 100.0 38 ............................... ATCTCTAATGCTCTCATCACATCACCTCACATCTTAGT 1769583 31 100.0 42 ............................... AAGGATCTTATCAAATAATATATATCTTTTTAATTTCACTCC 1769656 31 100.0 44 ............................... TAGATTGTATGAGCTTTACGTAAGTGCTAAAATGAAAAACTCTA 1769731 31 100.0 40 ............................... GCGGGCAAATTGACTCCCCATGCCTCAATTTGTTAATCAA 1769802 31 96.8 37 ..............................T TCAGTTACAATTAAATTACTTCTTTTATATATTTCTG 1769870 31 90.3 0 ......................A..A....T | ========== ====== ====== ====== =============================== ============================================ ================== 9 31 98.6 40 GTTAAAATCAGACCCTTAGGGGGATGGAAAC # Left flank : AAAAAGGTTGAGTTAGTTGAGGCATTGGGAGAGTGTGATTACAGAATCGTGGAGGGGGCAAACGAAAGGATTCAGTTATGTGCGTTGTTGGCAAAGATGTGCAATATGAGTAAAGAGTGAAGATGTCTTTTATACCCTTCCCTCGCTGAAAATTTTTATTTTTTAATTTAATTGATTTTTAGGGATTATTTTTTAATTTTAAGGATTTTTATCAAATTTCGGAGGGTGCTTTATTTTGAAGAATTTAAATCTTTAATTTTATGGATTTATTGAGATTTTTTGATTTAAAAACCTAATAGATCATATTTCAAATTTTCCCCGATTGATAGAGTTTATTTAACGATTTAAATCGATTTTAAAAAATTATTTCGAATTTAAACGATTTTTAGGGAAGTGCAGAGGTATATAAATGAACACTGTTAATACCCCTTCGAAAACTAATGCTTTAAAAAGAAGCAAATAGAAAACTTTATATAGGAAAAAGAGCAAAATATTGCCCT # Right flank : TCCTTTTTCAATTTCTATAAGTTTTTTTTAATCCATCTGGTAGAATCAGCCCTTAGGGATGGAAATTTTATTTTTTAATAGAGGCATTGCTGAGCGAAGCGAAGCAATGCATCCCTTTTGATGAAACTTTTTAAAAGTTTCTTTTAAAGGTTTCTTTTAGAGGTTTCATGACTAAATTTGCTCATCTCTTTACCGAAAGAATTGCTTTTATAGTTATTGCTAAAATAACAAAGGATGTTATTAGCGTTGAGATTGCCCCCCCAACAACACCAATCTCCCCAACTAAGATGTAATTGAGCAAAAGGTTCAAAACTATCCCAAATAAGATAATATACAAAGATATCTTAGCATATCCCAACCCTTGCAATGCTGAGGATGAGATTGTGTAGATGCTCATAAATACTGCAGAAACTGAGAGGATTTTTAAACATATTGATGCCTCTGGATTCTTAACATGGAAAAAGAGATGCAAAAGTTCATTTGGAAATGCAAAGCACAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCCTTAGGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //